Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006698

Physical Location & Seq

Genomic Coordinates Reverse (-)

66063587 .. 66067674

Gene Structure 4088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG454200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGCTTATTGTGAATACCCATTTGTTATTTCCTCATGATTCAAGTTTGTGTATAGTACGATTGCATCAGGTGTACAAAATCCTACAATATGTGGAATCTTATCAGAAAGAGAAAAAACTTAACCCCATGCCTATCATTCTCTGTGGTGACTGGAATGGAAGCAAACGTGGACATGTTTACAAGTTTCTTAGGTCCCAGGGGTTTGTATCTTCTTATGATACTGCTCATCATTACACCGATGCAGATGCACAAAAGTGGGTTAGCCACCGAAACCATCGGGGAAACATATGTGGGGTTGACTTTATATGGCTTCTCAACCCAAACAGTTACCGGAAACTGCTAAAAACAAGTTGGAGTGAAGCAGTATTTGGCATGTTCAAGTATCTACTACGAAGAGCTTCACTGACAGAAAGTGATGCCTTTGCCTTTCTGAAGGCTGACAACCCTGGTGATTACATTACCTATTCTGGCTTCTGTGAAGCTCTCCGACAGCTTAATTTGACTGGTCATTGCCATGGACTTAGCCTTGAAGAGACCAAGGATTTGTGGGTTCAAGCAGACATAGATGGCAATGGTATTCTTGATTACAAAGGGTTTCAGCAGCGAATTTGGAATCCAACAGATGGTGGTAATGACATCTGGGATGTTGGCTCCAATGGTATTCAGGATCAAGCAATTGGTTTCAGTATAAAAAATGCAGTTCTTTTCCCTCCTGAAGCGGAGAAAGGAACGTGGCCCGAAGACTACTCTCTTTCTGATCATGCACGACTCACTGTGGTTTTCTCACCGGTAAGAATGCCATGCTCTCAGATGATCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exo_endo_phos

Protein Analysis

273

Amino Acids

31.17

Weight (kDa)

6.59

Isoelectric Point (pI)

32.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006698)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G54130
fragaria_vesca	FvH4_7g33080 FvH4_7g33080 FvH4_7g33080 FvH4_7g33080
malus_domestica	MD01G1230000.v1.1 MD01G1230100.v1.1 MD07G1301900.v1.1
prunus_persica	Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1 Prupe.2G320700_v2.0.a1
pyrus_communis	pycom01g23810 pycom07g27500 pycom07g27510
rosa_chinensis	RchiOBHm_Chr1g0383111
rosa_laevigata	RLG00000026129
rosa_multiflora	Rmu_sc0008563.1_g000012
rosa_roxburghii	Rroxscaffold_4G00277580
rosa_rugosa	Rorug01G0438700 Rorug01G0438700
rosa_samantha	Rh1AG464300 Rh1BG421600 Rh1CG435000 Rh1DG454200
rosa_wichuraiana	Rw1G040790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	623
AciI	CCGC	1 cut(s)	719
AclWI	GGATC	1 cut(s)	675
AcsI	RAATTY	1 cut(s)	606
AcuI	CTGAAG	2 cut(s)	452, 735
AfaI	GTAC	2 cut(s)	57, 74
AfiI	CCNNNNNNNGG	1 cut(s)	623
AflIII	ACRYGT	1 cut(s)	172
AgeI	ACCGGT	1 cut(s)	787
AgsI	TTSAA	4 cut(s)	42, 379, 530, 554
AjnI	CCWGG	2 cut(s)	195, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	351, 383
AleI	CACNNNNGTG	1 cut(s)	253
AluBI	AGCT	3 cut(s)	398, 482, 493
AluI	AGCT	3 cut(s)	398, 482, 493
Alw26I	GTCTC	1 cut(s)	527
AlwI	GGATC	1 cut(s)	675
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	1 cut(s)	601
ApoI	RAATTY	1 cut(s)	606
ArsI	GACNNNNNNTTYG	2 cut(s)	526, 558
AsiGI	ACCGGT	1 cut(s)	787
Asp700I	GAANNNNTTC	1 cut(s)	397
AspS9I	GGNCC	2 cut(s)	192, 735
AsuHPI	GGTGA	3 cut(s)	158, 461, 777
AvaII	GGWCC	1 cut(s)	192
BbsI	GAAGAC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	613
BccI	CCATC	3 cut(s)	282, 560, 617
BcgI	CGANNNNNNTGC	2 cut(s)	227, 261
BciT130I	CCWGG	2 cut(s)	197, 447
BclI	TGATCA	2 cut(s)	757, 813
BcoDI	GTCTC	1 cut(s)	527
BisI	GCNGC	1 cut(s)	602
BlsI	GCNGC	1 cut(s)	603
Bme1390I	CCNGG	2 cut(s)	197, 447
Bme18I	GGWCC	1 cut(s)	192
BmgT120I	GGNCC	2 cut(s)	192, 735
BmiI	GGNNCC	2 cut(s)	194, 652
BmrFI	CCNGG	2 cut(s)	197, 447
BmsI	GCATC	4 cut(s)	73, 229, 235, 406
BpiI	GAAGAC	1 cut(s)	747
BsaI	GGTCTC	1 cut(s)	527
BsaJI	CCNNGG	5 cut(s)	195, 196, 445, 514, 537
BsaWI	WCCGGW	2 cut(s)	330, 787
Bsc4I	CCNNNNNNNGG	1 cut(s)	623
Bse118I	RCCGGY	1 cut(s)	787
Bse1I	ACTGG	2 cut(s)	155, 508
Bse3DI	GCAATG	2 cut(s)	508, 577
BseBI	CCWGG	2 cut(s)	197, 447
BseDI	CCNNGG	5 cut(s)	195, 196, 445, 514, 537
BseGI	GGATG	1 cut(s)	649
BseLI	CCNNNNNNNGG	1 cut(s)	623
BseMI	GCAATG	2 cut(s)	508, 577
BseMII	CTCAG	1 cut(s)	821
BseNI	ACTGG	2 cut(s)	155, 508
BseXI	GCAGC	1 cut(s)	613
BshFI	GGCC	1 cut(s)	736
BshTI	ACCGGT	1 cut(s)	787
BsiSI	CCGG	2 cut(s)	331, 788
BslFI	GGGAC	1 cut(s)	178
BslI	CCNNNNNNNGG	1 cut(s)	623
BsmAI	GTCTC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	801
BsnI	GGCC	1 cut(s)	736
Bso31I	GGTCTC	1 cut(s)	527
Bsp1407I	TGTACA	1 cut(s)	72
Bsp143I	GATC	3 cut(s)	667, 757, 813
Bsp19I	CCATGG	1 cut(s)	514
BspACI	CCGC	1 cut(s)	719
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	1 cut(s)	820
BspHI	TCATGA	1 cut(s)	34
BspLI	GGNNCC	2 cut(s)	194, 652
BspPI	GGATC	1 cut(s)	675
BspQI	GCTCTTC	1 cut(s)	388
BspTNI	GGTCTC	1 cut(s)	527
BsrDI	GCAATG	2 cut(s)	508, 577
BsrFI	RCCGGY	1 cut(s)	787
BsrGI	TGTACA	1 cut(s)	72
BsrI	ACTGG	2 cut(s)	155, 508
BssAI	RCCGGY	1 cut(s)	787
BssECI	CCNNGG	5 cut(s)	195, 196, 445, 514, 537
BssMI	GATC	3 cut(s)	667, 757, 813
BssT1I	CCWWGG	2 cut(s)	514, 537
Bst2UI	CCWGG	2 cut(s)	197, 447
Bst4CI	ACNGT	2 cut(s)	326, 775
Bst6I	CTCTTC	2 cut(s)	388, 525
BstAUI	TGTACA	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	188, 521, 807
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	1 cut(s)	649
BstKTI	GATC	3 cut(s)	670, 760, 816
BstMAI	GTCTC	1 cut(s)	527
BstMBI	GATC	3 cut(s)	667, 757, 813
BstNI	CCWGG	2 cut(s)	197, 447
BstNSI	RCATGY	2 cut(s)	176, 376
BstSCI	CCNGG	2 cut(s)	195, 445
BstV1I	GCAGC	1 cut(s)	613
BstV2I	GAAGAC	1 cut(s)	747
BsuRI	GGCC	1 cut(s)	736
BtgI	CCRYGG	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	649
BtsIMutI	CAGTG	2 cut(s)	401, 771
CciI	TCATGA	1 cut(s)	34
Cfr10I	RCCGGY	1 cut(s)	787
Cfr13I	GGNCC	2 cut(s)	192, 735
Csp6I	GTAC	2 cut(s)	56, 73
CspAI	ACCGGT	1 cut(s)	787
CviAII	CATG	7 cut(s)	35, 127, 173, 373, 515, 761, 801
CviQI	GTAC	2 cut(s)	56, 73
DdeI	CTNAG	3 cut(s)	188, 521, 807
DpnI	GATC	3 cut(s)	669, 759, 815
DpnII	GATC	3 cut(s)	667, 757, 813
Eam1104I	CTCTTC	2 cut(s)	388, 525
EarI	CTCTTC	2 cut(s)	388, 525
Eco130I	CCWWGG	2 cut(s)	514, 537
Eco31I	GGTCTC	1 cut(s)	527
Eco47I	GGWCC	1 cut(s)	192
Eco57I	CTGAAG	2 cut(s)	452, 735
EcoO109I	RGGNCCY	1 cut(s)	192
EcoRII	CCWGG	2 cut(s)	195, 445
EcoT14I	CCWWGG	2 cut(s)	514, 537
ErhI	CCWWGG	2 cut(s)	514, 537
FaeI	CATG	7 cut(s)	38, 130, 176, 376, 518, 764, 804
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	7 cut(s)	34, 126, 172, 372, 514, 760, 800
FauNDI	CATATG	1 cut(s)	287
FbaI	TGATCA	2 cut(s)	757, 813
Fnu4HI	GCNGC	1 cut(s)	602
FokI	GGATG	1 cut(s)	656
Fsp4HI	GCNGC	1 cut(s)	602
GluI	GCNGC	1 cut(s)	602
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	2 cut(s)	331, 788
Hin1II	CATG	7 cut(s)	38, 130, 176, 376, 518, 764, 804
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HinfI	GANTC	4 cut(s)	38, 95, 613, 768
HpaII	CCGG	2 cut(s)	331, 788
HphI	GGTGA	3 cut(s)	158, 461, 777
Hpy166II	GTNNAC	4 cut(s)	73, 170, 178, 298
Hpy188I	TCNGA	5 cut(s)	105, 432, 488, 757, 810
Hpy188III	TCNNGA	4 cut(s)	35, 581, 665, 713
Hpy8I	GTNNAC	4 cut(s)	73, 170, 178, 298
HpyAV	CCTTC	1 cut(s)	427
HpyCH4III	ACNGT	2 cut(s)	326, 775
HpyCH4IV	ACGT	2 cut(s)	166, 731
HpyCH4V	TGCA	5 cut(s)	64, 242, 248, 698, 764
HpyF3I	CTNAG	3 cut(s)	188, 521, 807
HpySE526I	ACGT	2 cut(s)	166, 731
Hsp92II	CATG	7 cut(s)	38, 130, 176, 376, 518, 764, 804
Ksp22I	TGATCA	2 cut(s)	757, 813
Kzo9I	GATC	3 cut(s)	667, 757, 813
LguI	GCTCTTC	1 cut(s)	388
LmnI	GCTCC	1 cut(s)	656
Lsp1109I	GCAGC	1 cut(s)	613
LweI	GCATC	4 cut(s)	73, 229, 235, 406
MaeII	ACGT	2 cut(s)	166, 731
MaeIII	GTNAC	2 cut(s)	146, 326
MalI	GATC	3 cut(s)	669, 759, 815
MboI	GATC	3 cut(s)	667, 757, 813
MboII	GAAGA	4 cut(s)	201, 405, 542, 752
MfeI	CAATTG	1 cut(s)	675
MluCI	AATT	3 cut(s)	496, 606, 675
MlyI	GAGTC	1 cut(s)	762
MmeI	TCCRAC	3 cut(s)	332, 511, 641
MnlI	CCTC	2 cut(s)	42, 720
MroXI	GAANNNNTTC	1 cut(s)	397
MseI	TTAA	2 cut(s)	120, 495
MslI	CAYNNNNRTG	2 cut(s)	253, 513
MspI	CCGG	2 cut(s)	331, 788
MspR9I	CCNGG	2 cut(s)	197, 447
MunI	CAATTG	1 cut(s)	675
Mva1269I	GAATGC	1 cut(s)	801
MvaI	CCWGG	2 cut(s)	197, 447
NcoI	CCATGG	1 cut(s)	514
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	3 cut(s)	667, 757, 813
NlaIII	CATG	7 cut(s)	38, 130, 176, 376, 518, 764, 804
NlaIV	GGNNCC	2 cut(s)	194, 652
NmuCI	GTSAC	1 cut(s)	146
NspI	RCATGY	2 cut(s)	176, 376
OliI	CACNNNNGTG	1 cut(s)	253
PagI	TCATGA	1 cut(s)	34
PasI	CCCWGGG	1 cut(s)	196
PciI	ACATGT	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	388
PctI	GAATGC	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	397
PfeI	GAWTC	3 cut(s)	38, 95, 613
PflMI	CCANNNNNTGG	1 cut(s)	623
PinAI	ACCGGT	1 cut(s)	787
PkrI	GCNGC	1 cut(s)	603
PleI	GAGTC	1 cut(s)	762
PpsI	GAGTC	1 cut(s)	762
PpuMI	RGGWCCY	1 cut(s)	192
PscI	ACATGT	1 cut(s)	172
Psp5II	RGGWCCY	1 cut(s)	192
Psp6I	CCWGG	2 cut(s)	195, 445
PspGI	CCWGG	2 cut(s)	195, 445
PspN4I	GGNNCC	2 cut(s)	194, 652
PspPI	GGNCC	2 cut(s)	192, 735
PspPPI	RGGWCCY	1 cut(s)	192
RsaI	GTAC	2 cut(s)	57, 74
RsaNI	GTAC	2 cut(s)	56, 73
RseI	CAYNNNNRTG	2 cut(s)	253, 513
SapI	GCTCTTC	1 cut(s)	388
SaqAI	TTAA	2 cut(s)	120, 495
SatI	GCNGC	1 cut(s)	602
Sau3AI	GATC	3 cut(s)	667, 757, 813
Sau96I	GGNCC	2 cut(s)	192, 735
SchI	GAGTC	1 cut(s)	762
ScrFI	CCNGG	2 cut(s)	197, 447
SetI	ASST	8 cut(s)	72, 169, 194, 400, 464, 484, 495, 734
SfaNI	GCATC	4 cut(s)	73, 229, 235, 406
SinI	GGWCC	1 cut(s)	192
SmiMI	CAYNNNNRTG	2 cut(s)	253, 513
Sse9I	AATT	3 cut(s)	496, 606, 675
SsiI	CCGC	1 cut(s)	719
StyD4I	CCNGG	2 cut(s)	195, 445
StyI	CCWWGG	2 cut(s)	514, 537
TaaI	ACNGT	2 cut(s)	326, 775
TaiI	ACGT	2 cut(s)	169, 734
TasI	AATT	3 cut(s)	496, 606, 675
TatI	WGTACW	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	38, 95, 613
Tru1I	TTAA	2 cut(s)	120, 495
Tru9I	TTAA	2 cut(s)	120, 495
TscAI	CASTG	2 cut(s)	408, 778
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	1 cut(s)	601
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	2 cut(s)	408, 778
Van91I	CCANNNNNTGG	1 cut(s)	623
VpaK11BI	GGWCC	1 cut(s)	192
XapI	RAATTY	1 cut(s)	606
XceI	RCATGY	2 cut(s)	176, 376
XmnI	GAANNNNTTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.