pycom02g01450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014626
Physical Location & Seq
Reverse (-)
875134 .. 876560
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 498 bp
ATGACTACTTCATGTCTAGCAGTATCTCTTCTTCTTCTTCTTTTGTCCCTCCTCCTTTCTCAGGCTCAAGGGATTCGTTTGGAGAAAGGATTCATCTCAGTTAGACAGCAGAACAATAATATCCACAAAGAGGAAAATACTGTGGTGAAAAGAAGTAATATTGCAGCAGCTGATCTTGCAGGAGAGCGTAGTAATATTGCATCATCAGGAAGCACTACAAAACTAATCTCAGCCACATCCCCCTCTAGTGCTACCACTACCACCACTTCAAAGAATGAGAAGAATGGAAGGGAAAAGAGAGGTGGTCCCGAACCGAAAGGCGAAAACATTAAAAGTACTACACCACATGGTGGAAAAAATGGGAATGTCAGAGCAAAATCACCAGTTATTTCTAAGCAGCAGGAGGCTGCTGCAGCTCACCAACACTATCCGGACCTAGCAGACATGACGGAAATGGACTATTCTCCGGCAAGGAGAAAACCTCCGATACACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

17.67

Weight (kDa)

9.83

Isoelectric Point (pI)

62.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GLV1-2 PF21529 133 - 165 1.9e-08 Gloven 1/2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014626)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g01840
malus_domestica MD02G1016300.v1.1 MD15G1160900.v1.1
prunus_persica Prupe.7G256100_v2.0.a1
pyrus_communis pycom02g01450 pycom15g14480
rosa_chinensis RchiOBHm_Chr2g0086811
rosa_laevigata RLG00000015798
rosa_multiflora Rmu_sc0025147.1_g000001 Rmu_sc0027662.1_g000001
rosa_roxburghii Rroxscaffold_2G00154140
rosa_rugosa Rorug01G0469700.1
rosa_samantha Rh2AG022400 Rh2BG022700 Rh2CG023300 Rh2DG022900
rosa_wichuraiana Rw2G001780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 350
AccIII TCCGGA 1 cut(s) 430
AdeI CACNNNGTG 1 cut(s) 350
AfaI GTAC 1 cut(s) 337
AfiI CCNNNNNNNGG 3 cut(s) 61, 130, 350
AgsI TTSAA 1 cut(s) 270
AluBI AGCT 2 cut(s) 170, 416
AluI AGCT 2 cut(s) 170, 416
AlwNI CAGNNNCTG 1 cut(s) 170
Aor13HI TCCGGA 1 cut(s) 430
ApeKI GCWGC 6 cut(s) 164, 167, 397, 407, 410, 413
Asp700I GAANNNNTTC 1 cut(s) 89
AspS9I GGNCC 2 cut(s) 305, 433
AsuHPI GGTGA 3 cut(s) 157, 372, 410
AvaII GGWCC 2 cut(s) 305, 433
BarI GAAGNNNNNNTAC 2 cut(s) 15, 47
BbvI GCAGC 6 cut(s) 176, 179, 394, 397, 409, 425
BfaI CTAG 3 cut(s) 17, 246, 437
BfmI CTRYAG 1 cut(s) 411
BisI GCNGC 6 cut(s) 165, 168, 398, 408, 411, 414
BlsI GCNGC 6 cut(s) 166, 169, 399, 409, 412, 415
BmcAI AGTACT 1 cut(s) 337
Bme18I GGWCC 2 cut(s) 305, 433
BmgT120I GGNCC 2 cut(s) 305, 433
BmiI GGNNCC 1 cut(s) 307
BmsI GCATC 1 cut(s) 209
BplI GAGNNNNNCTC 2 cut(s) 466, 498
BpuEI CTTGAG 1 cut(s) 51
BsaWI WCCGGW 1 cut(s) 430
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 130, 350
Bse1I ACTGG 1 cut(s) 383
BseAI TCCGGA 1 cut(s) 430
BseGI GGATG 1 cut(s) 236
BseLI CCNNNNNNNGG 3 cut(s) 61, 130, 350
BseMII CTCAG 3 cut(s) 74, 111, 243
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 6 cut(s) 176, 179, 394, 397, 409, 425
BsiSI CCGG 2 cut(s) 431, 467
BslFI GGGAC 2 cut(s) 31, 291
BslI CCNNNNNNNGG 3 cut(s) 61, 130, 350
BsmFI GGGAC 2 cut(s) 31, 291
Bsp13I TCCGGA 1 cut(s) 430
Bsp143I GATC 1 cut(s) 172
BspCNI CTCAG 3 cut(s) 73, 110, 242
BspEI TCCGGA 1 cut(s) 430
BspLI GGNNCC 1 cut(s) 307
BspMAI CTGCAG 1 cut(s) 415
BsrI ACTGG 1 cut(s) 383
BssMI GATC 1 cut(s) 172
Bst4CI ACNGT 1 cut(s) 142
Bst6I CTCTTC 1 cut(s) 33
BstDEI CTNAG 4 cut(s) 60, 97, 229, 393
BstENI CCTNNNNNAGG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 236
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 176, 413
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 6 cut(s) 176, 179, 394, 397, 409, 425
BtsCI GGATG 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 305, 433
Csp6I GTAC 1 cut(s) 336
CviAII CATG 3 cut(s) 12, 347, 445
CviJI RGCY 5 cut(s) 65, 170, 233, 407, 416
CviKI_1 RGCY 5 cut(s) 65, 170, 233, 407, 416
CviQI GTAC 1 cut(s) 336
DdeI CTNAG 4 cut(s) 60, 97, 229, 393
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
DraIII CACNNNGTG 1 cut(s) 350
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 305, 433
EcoNI CCTNNNNNAGG 1 cut(s) 59
FaeI CATG 3 cut(s) 15, 350, 448
FaiI YATR 3 cut(s) 13, 348, 446
FaqI GGGAC 2 cut(s) 31, 291
FatI CATG 3 cut(s) 11, 346, 444
Fnu4HI GCNGC 6 cut(s) 165, 168, 398, 408, 411, 414
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 6 cut(s) 165, 168, 398, 408, 411, 414
FspBI CTAG 3 cut(s) 17, 246, 437
GluI GCNGC 6 cut(s) 165, 168, 398, 408, 411, 414
HapII CCGG 2 cut(s) 431, 467
Hin1II CATG 3 cut(s) 15, 350, 448
HinfI GANTC 2 cut(s) 73, 90
HpaII CCGG 2 cut(s) 431, 467
HphI GGTGA 3 cut(s) 157, 372, 410
Hpy188I TCNGA 2 cut(s) 371, 486
Hpy188III TCNNGA 3 cut(s) 207, 308, 431
HpyAV CCTTC 1 cut(s) 282
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4V TGCA 4 cut(s) 164, 179, 200, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 413
HpyF3I CTNAG 4 cut(s) 60, 97, 229, 393
Hsp92II CATG 3 cut(s) 15, 350, 448
Kpn2I TCCGGA 1 cut(s) 430
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 7 cut(s) 47, 165, 192, 386, 396, 444, 480
Lsp1109I GCAGC 6 cut(s) 176, 179, 394, 397, 409, 425
LweI GCATC 1 cut(s) 209
MaeI CTAG 3 cut(s) 17, 246, 437
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 5 cut(s) 20, 23, 26, 29, 292
MnlI CCTC 7 cut(s) 59, 62, 124, 253, 293, 397, 492
MroI TCCGGA 1 cut(s) 430
MroXI GAANNNNTTC 1 cut(s) 89
MseI TTAA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 2 cut(s) 431, 467
MwoI GCNNNNNNNGC 2 cut(s) 176, 413
NdeII GATC 1 cut(s) 172
NlaIII CATG 3 cut(s) 15, 350, 448
NlaIV GGNNCC 1 cut(s) 307
PdmI GAANNNNTTC 1 cut(s) 89
PfeI GAWTC 2 cut(s) 73, 90
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 6 cut(s) 166, 169, 399, 409, 412, 415
PspN4I GGNNCC 1 cut(s) 307
PspPI GGNCC 2 cut(s) 305, 433
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 170
PvuII CAGCTG 1 cut(s) 170
RsaI GTAC 1 cut(s) 337
RsaNI GTAC 1 cut(s) 336
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 6 cut(s) 165, 168, 398, 408, 411, 414
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 2 cut(s) 305, 433
ScaI AGTACT 1 cut(s) 337
SetI ASST 5 cut(s) 172, 304, 418, 438, 484
SfaNI GCATC 1 cut(s) 209
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 2 cut(s) 305, 433
SmlI CTYRAG 1 cut(s) 66
SmoI CTYRAG 1 cut(s) 66
SspI AATATT 2 cut(s) 160, 196
SspMI CTAG 3 cut(s) 17, 246, 437
TaaI ACNGT 1 cut(s) 142
TatI WGTACW 1 cut(s) 335
TfiI GAWTC 2 cut(s) 73, 90
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TseI GCWGC 6 cut(s) 164, 167, 397, 407, 410, 413
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 464
Van91I CCANNNNNTGG 1 cut(s) 350
VpaK11BI GGWCC 2 cut(s) 305, 433
XagI CCTNNNNNAGG 1 cut(s) 59
XmnI GAANNNNTTC 1 cut(s) 89
XspI CTAG 3 cut(s) 17, 246, 437
ZrmI AGTACT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.