pycom02g02220

UDP-sugar transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009640
Physical Location & Seq
Reverse (-)
1350418 .. 1353739
3322 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1008 bp
ATGGAGACGGAAAGAACCCAGATGAAGTTGCCAGTCTCCTCCTCCAACTCTCCGCGGACCAAGAATTCCCCGGCGATGACCAAGAAAGGAGCTTTTGCTGCCGTTTCTTACATGGCTTCCGCCGTTCTCTTGATAATGTTCAACAAAGCAGCCCTTTCTTCTTACAATTTCCCGTCTGCAAATGTCATCACACTTTTCCAGATGGTATCGTCGTGTACATTTCTGTATGCAATGAAATGCAGGAAGATCGTTTCTTTCACAACTGAACCAGAGAGTACTCCGAACAATCCAGCAGTTCTCGTACCATTTAAGACGTTGATTCGCACTCTTCCTCTTGCAATGTCCTATTTGCTTTACATGTTGATTACAATGGAATCAGTTCGTGGTATAAATGTTCCTATGTACACCACCCTCAGACGGACTACAGTAGCTTTTACAATGATTGTTGAGCATATTTTGACACGGCAGAAACATTCATATCCTGTTATGGGCAGTGTGGGGATAATTATACTTGGTGCAATTGTTGCCGGAGCTCGGGATTTGTCATTTGATGCCTATAGCTATGGTGTTGTCTTTGTTGCAAACATATGCACGGCGATATATCTTGCTTCTATAGCTCATATTGGTAAATCCAGTGGTCTTAGTACCTTTGGCCTAATGTGGTGCAATGGAATAATATGTGGACCAATCTTGCTGTTTTGGACATCAATTAACGGTGACCTAGAAGGGATGATAAACTTCCCGCATCTATTCTCCCCTGGGTTTCAGGCTGTGATGCTTCTTTCCTGTGTTATGGCTTTTTCCCTAAATTATTGCGTTTTTTGGAATACCACTCTGAATTCTGCTCTCACACAGACAATTTGTGGTAATTTGAAGGATCTTTTTACTATCGGACTTGGCTGGTTACTGTTCGGCGGGCTTCCATTTGATTTGTTAAATGTTGCTGGTCAATCTCTTGGTTTTTTTGGGTCCTGTTTATATGCGTACTGTAAACTCCGAGGGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPT

Protein Analysis

336

Amino Acids

36.66

Weight (kDa)

9.22

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPT PF03151 33 - 327 7.6e-12 Triose-phosphate Transporter family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 55
AciI CCGC 5 cut(s) 53, 55, 120, 743, 915
AclWI GGATC 1 cut(s) 885
AcsI RAATTY 2 cut(s) 64, 838
AfaI GTAC 6 cut(s) 217, 277, 303, 404, 646, 986
AfiI CCNNNNNNNGG 3 cut(s) 417, 488, 534
AflIII ACRYGT 1 cut(s) 357
AgsI TTSAA 2 cut(s) 142, 874
AjnI CCWGG 1 cut(s) 757
AluBI AGCT 5 cut(s) 92, 431, 533, 561, 617
AluI AGCT 5 cut(s) 92, 431, 533, 561, 617
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 1 cut(s) 40
AlwI GGATC 1 cut(s) 885
Ama87I CYCGRG 1 cut(s) 534
AoxI GGCC 1 cut(s) 652
ApeKI GCWGC 2 cut(s) 98, 149
ApoI RAATTY 2 cut(s) 64, 838
Asp700I GAANNNNTTC 1 cut(s) 378
AspS9I GGNCC 3 cut(s) 57, 683, 969
AsuC2I CCSGG 1 cut(s) 71
AsuHPI GGTGA 1 cut(s) 728
AvaI CYCGRG 1 cut(s) 534
AvaII GGWCC 3 cut(s) 57, 683, 969
BanII GRGCYC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 2 cut(s) 85, 161
BccI CCATC 1 cut(s) 196
BceAI ACGGC 4 cut(s) 86, 107, 479, 609
BcgI CGANNNNNNTGC 2 cut(s) 229, 263
BciT130I CCWGG 1 cut(s) 759
BcnI CCSGG 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 40
BfaI CTAG 1 cut(s) 722
BfmI CTRYAG 3 cut(s) 423, 556, 612
BisI GCNGC 2 cut(s) 99, 150
BlsI GCNGC 2 cut(s) 100, 151
BmcAI AGTACT 1 cut(s) 277
Bme1390I CCNGG 2 cut(s) 71, 759
Bme18I GGWCC 3 cut(s) 57, 683, 969
BmeT110I CYCGRG 1 cut(s) 534
BmgT120I GGNCC 3 cut(s) 57, 683, 969
BmiI GGNNCC 1 cut(s) 970
BmrFI CCNGG 2 cut(s) 71, 759
BmsI GCATC 3 cut(s) 541, 754, 765
BpuMI CCSGG 1 cut(s) 71
BsaJI CCNNGG 5 cut(s) 53, 69, 757, 758, 997
Bsc4I CCNNNNNNNGG 3 cut(s) 417, 488, 534
Bse1I ACTGG 2 cut(s) 32, 633
Bse3DI GCAATG 3 cut(s) 237, 345, 673
BseBI CCWGG 1 cut(s) 759
BseDI CCNNGG 5 cut(s) 53, 69, 757, 758, 997
BseGI GGATG 1 cut(s) 735
BseLI CCNNNNNNNGG 3 cut(s) 417, 488, 534
BseMI GCAATG 3 cut(s) 237, 345, 673
BseMII CTCAG 1 cut(s) 427
BseNI ACTGG 2 cut(s) 32, 633
BseRI GAGGAG 2 cut(s) 28, 31
BseXI GCAGC 2 cut(s) 85, 161
Bsh1236I CGCG 1 cut(s) 55
BshFI GGCC 1 cut(s) 654
BsiHKAI GWGCWC 1 cut(s) 535
BsiHKCI CYCGRG 1 cut(s) 534
BsiSI CCGG 2 cut(s) 71, 528
BslI CCNNNNNNNGG 3 cut(s) 417, 488, 534
BsmAI GTCTC 1 cut(s) 40
BsnI GGCC 1 cut(s) 654
BsoBI CYCGRG 1 cut(s) 534
Bsp1286I GDGCHC 1 cut(s) 535
Bsp1407I TGTACA 2 cut(s) 215, 402
Bsp143I GATC 2 cut(s) 246, 877
BspACI CCGC 5 cut(s) 53, 55, 120, 743, 915
BspANI GGCC 1 cut(s) 654
BspCNI CTCAG 1 cut(s) 426
BspFNI CGCG 1 cut(s) 55
BspLI GGNNCC 1 cut(s) 970
BspPI GGATC 1 cut(s) 885
BsrDI GCAATG 3 cut(s) 237, 345, 673
BsrGI TGTACA 2 cut(s) 215, 402
BsrI ACTGG 2 cut(s) 32, 633
BssECI CCNNGG 5 cut(s) 53, 69, 757, 758, 997
BssMI GATC 2 cut(s) 246, 877
Bst2UI CCWGG 1 cut(s) 759
Bst4CI ACNGT 4 cut(s) 427, 716, 909, 989
Bst6I CTCTTC 1 cut(s) 333
BstAPI GCANNNNNTGC 1 cut(s) 524
BstAUI TGTACA 2 cut(s) 215, 402
BstC8I GCNNGC 1 cut(s) 917
BstDEI CTNAG 2 cut(s) 413, 641
BstDSI CCRYGG 1 cut(s) 53
BstEII GGTNACC 1 cut(s) 716
BstF5I GGATG 1 cut(s) 735
BstFNI CGCG 1 cut(s) 55
BstKTI GATC 2 cut(s) 249, 880
BstMAI GTCTC 1 cut(s) 40
BstMBI GATC 2 cut(s) 246, 877
BstMWI GCNNNNNNNGC 3 cut(s) 98, 524, 614
BstNI CCWGG 1 cut(s) 759
BstNSI RCATGY 1 cut(s) 361
BstPI GGTNACC 1 cut(s) 716
BstSCI CCNGG 2 cut(s) 69, 757
BstSFI CTRYAG 3 cut(s) 423, 556, 612
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 2 cut(s) 85, 161
BstX2I RGATCY 1 cut(s) 877
BstYI RGATCY 1 cut(s) 877
BsuRI GGCC 1 cut(s) 654
BtgI CCRYGG 1 cut(s) 53
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 1 cut(s) 735
BtsI GCAGTG 1 cut(s) 499
BtsIMutI CAGTG 2 cut(s) 499, 640
Cac8I GCNNGC 1 cut(s) 917
Cfr13I GGNCC 3 cut(s) 57, 683, 969
Cfr42I CCGCGG 1 cut(s) 56
Csp6I GTAC 6 cut(s) 216, 276, 302, 403, 645, 985
CviAII CATG 2 cut(s) 112, 358
CviQI GTAC 6 cut(s) 216, 276, 302, 403, 645, 985
DdeI CTNAG 2 cut(s) 413, 641
DpnI GATC 2 cut(s) 248, 879
DpnII GATC 2 cut(s) 246, 877
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
EciI GGCGGA 1 cut(s) 109
Ecl136II GAGCTC 1 cut(s) 533
Eco24I GRGCYC 1 cut(s) 535
Eco47I GGWCC 3 cut(s) 57, 683, 969
Eco53kI GAGCTC 1 cut(s) 533
Eco88I CYCGRG 1 cut(s) 534
Eco91I GGTNACC 1 cut(s) 716
EcoICRI GAGCTC 1 cut(s) 533
EcoO109I RGGNCCY 1 cut(s) 969
EcoO65I GGTNACC 1 cut(s) 716
EcoRI GAATTC 2 cut(s) 64, 838
EcoRII CCWGG 1 cut(s) 757
EcoT38I GRGCYC 1 cut(s) 535
FaeI CATG 2 cut(s) 115, 361
FalI AAGNNNNNCTT 2 cut(s) 138, 170
FatI CATG 2 cut(s) 111, 357
FauI CCCGC 2 cut(s) 750, 908
FauNDI CATATG 1 cut(s) 587
Fnu4HI GCNGC 2 cut(s) 99, 150
FokI GGATG 1 cut(s) 742
FriOI GRGCYC 1 cut(s) 535
Fsp4HI GCNGC 2 cut(s) 99, 150
FspBI CTAG 1 cut(s) 722
GluI GCNGC 2 cut(s) 99, 150
HaeIII GGCC 1 cut(s) 654
HapII CCGG 2 cut(s) 71, 528
Hin1II CATG 2 cut(s) 115, 361
HinfI GANTC 2 cut(s) 319, 374
HpaII CCGG 2 cut(s) 71, 528
HphI GGTGA 1 cut(s) 728
Hpy166II GTNNAC 4 cut(s) 216, 405, 683, 992
Hpy188I TCNGA 5 cut(s) 282, 416, 837, 893, 998
Hpy188III TCNNGA 3 cut(s) 130, 199, 536
Hpy8I GTNNAC 4 cut(s) 216, 405, 683, 992
Hpy99I CGWCG 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 719, 868
HpyCH4III ACNGT 4 cut(s) 427, 716, 909, 989
HpyCH4IV ACGT 1 cut(s) 314
HpyCH4V TGCA 8 cut(s) 179, 230, 240, 338, 518, 581, 591, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 524, 614
HpyF3I CTNAG 2 cut(s) 413, 641
HpySE526I ACGT 1 cut(s) 314
Hsp92II CATG 2 cut(s) 115, 361
KspI CCGCGG 1 cut(s) 56
Kzo9I GATC 2 cut(s) 246, 877
LmnI GCTCC 2 cut(s) 89, 530
Lsp1109I GCAGC 2 cut(s) 85, 161
LweI GCATC 3 cut(s) 541, 754, 765
MaeI CTAG 1 cut(s) 722
MaeII ACGT 1 cut(s) 314
MaeIII GTNAC 2 cut(s) 716, 903
MalI GATC 2 cut(s) 248, 879
MboI GATC 2 cut(s) 246, 877
MboII GAAGA 3 cut(s) 150, 256, 320
MfeI CAATTG 1 cut(s) 519
MflI RGATCY 1 cut(s) 877
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 9 cut(s) 64, 166, 504, 519, 708, 808, 838, 858, 868
MmeI TCCRAC 1 cut(s) 69
MnlI CCTC 5 cut(s) 49, 52, 342, 422, 992
MroXI GAANNNNTTC 1 cut(s) 378
MseI TTAA 3 cut(s) 309, 711, 935
MspA1I CMGCKG 1 cut(s) 55
MspI CCGG 2 cut(s) 71, 528
MspR9I CCNGG 2 cut(s) 71, 759
MunI CAATTG 1 cut(s) 519
MvaI CCWGG 1 cut(s) 759
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 98, 524, 614
NciI CCSGG 1 cut(s) 71
NdeI CATATG 1 cut(s) 587
NdeII GATC 2 cut(s) 246, 877
NlaIII CATG 2 cut(s) 115, 361
NlaIV GGNNCC 1 cut(s) 970
NmuCI GTSAC 1 cut(s) 716
NspI RCATGY 1 cut(s) 361
PasI CCCWGGG 1 cut(s) 758
PciI ACATGT 1 cut(s) 357
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 2 cut(s) 319, 374
PkrI GCNGC 2 cut(s) 100, 151
PpuMI RGGWCCY 1 cut(s) 969
PscI ACATGT 1 cut(s) 357
Psp124BI GAGCTC 1 cut(s) 535
Psp5II RGGWCCY 1 cut(s) 969
Psp6I CCWGG 1 cut(s) 757
PspEI GGTNACC 1 cut(s) 716
PspGI CCWGG 1 cut(s) 757
PspN4I GGNNCC 1 cut(s) 970
PspPI GGNCC 3 cut(s) 57, 683, 969
PspPPI RGGWCCY 1 cut(s) 969
PsuI RGATCY 1 cut(s) 877
RsaI GTAC 6 cut(s) 217, 277, 303, 404, 646, 986
RsaNI GTAC 6 cut(s) 216, 276, 302, 403, 645, 985
SacI GAGCTC 1 cut(s) 535
SacII CCGCGG 1 cut(s) 56
SaqAI TTAA 3 cut(s) 309, 711, 935
SatI GCNGC 2 cut(s) 99, 150
Sau3AI GATC 2 cut(s) 246, 877
Sau96I GGNCC 3 cut(s) 57, 683, 969
ScaI AGTACT 1 cut(s) 277
ScrFI CCNGG 2 cut(s) 71, 759
SduI GDGCHC 1 cut(s) 535
SetI ASST 8 cut(s) 94, 317, 433, 535, 563, 619, 650, 723
SfaNI GCATC 3 cut(s) 541, 754, 765
SfcI CTRYAG 3 cut(s) 423, 556, 612
Sfr303I CCGCGG 1 cut(s) 56
SgrBI CCGCGG 1 cut(s) 56
SinI GGWCC 3 cut(s) 57, 683, 969
Sse9I AATT 9 cut(s) 64, 166, 504, 519, 708, 808, 838, 858, 868
SsiI CCGC 5 cut(s) 53, 55, 120, 743, 915
SspMI CTAG 1 cut(s) 722
SstI GAGCTC 1 cut(s) 535
StyD4I CCNGG 2 cut(s) 69, 757
TaaI ACNGT 4 cut(s) 427, 716, 909, 989
TaiI ACGT 1 cut(s) 317
TasI AATT 9 cut(s) 64, 166, 504, 519, 708, 808, 838, 858, 868
TatI WGTACW 3 cut(s) 215, 275, 402
TfiI GAWTC 2 cut(s) 319, 374
Tru1I TTAA 3 cut(s) 309, 711, 935
Tru9I TTAA 3 cut(s) 309, 711, 935
TscAI CASTG 2 cut(s) 499, 640
TseFI GTSAC 1 cut(s) 716
TseI GCWGC 2 cut(s) 98, 149
Tsp45I GTSAC 1 cut(s) 716
TspDTI ATGAA 3 cut(s) 38, 248, 465
TspGWI ACGGA 2 cut(s) 23, 433
TspRI CASTG 2 cut(s) 499, 640
VpaK11BI GGWCC 3 cut(s) 57, 683, 969
XapI RAATTY 2 cut(s) 64, 838
XceI RCATGY 1 cut(s) 361
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 722
ZrmI AGTACT 1 cut(s) 277
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.