pycom02g06060
MYB Family

transcription, DNA-templated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0014417
Physical Location & Seq
Forward (+)
4071298 .. 4072802
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
ATGGGCAGAAAGTGCTCACATTGTGGAAACATAGGCCACAACTCTAGGACCTGCGCAAATTTCAGAGGCACTACTAGTAGTACTAGTTTTGTTGGATTTAGGCTCTTCGGCGTCCAACTTCATCGTGATCATCATCATCATATCATGATGTCTTCATCTAACATGAACAATAATTCTGCTAATCATCATGTTTCCATGTCCATGAAGAAAAGTTTCAGCATGGAGTGCTTGCCGACGACGACGTCGTCAGCCTCTTCATCTTCCCCATCTAATTCTTCATTGTCTCCTTCAAGACTTTCCATGGATGAAAATATTTGCGCATCAGATAAAGCTTCCATCGGCTATCTCTCTGACGGTCTCATATGCCAAGCCCAAGAAAGGAAAAAGGGAGTTCCATGGACGGAAGAGGAGCACCGGACGTTCCTAATCGGACTCGAGAAGTTAGGAAAGGGTGACTGGAGAGGCATCTCTAGGAATTATGTGACCACAAGAACCCCTACCCAAGTTGCGAGTCATGCTCAGAAGTATTTTCTCAGGCAAGCAAGCCTGACCAAAAAGAAGCGACGTTCTAGCCTCTTTGATATGTTTGGAAGCAGCAACAATATAAATATGGAAACTGATGATCCAATTCCTACTCAATGTGACAATATTATTCGTAATAACATGGCCATTGATTCCAGCACAGTGCCTCTGCTTGAACATAGCATTGCAGTGAAAAATCTAAACTTAGATCACAGTCAAAAACCTCAAAGACGTAGTACTACTACTCAGCAGCGGCCGGTTTGGATTTACGGGTTGATCGATTTCCAGATGAAACCGAATTCATCTTCGAGTAAAGCGTCAGTAGTACCGGATCTTGAGCTCACGCTTGCTGCACCAACTAGTCCTAATCTAGAACAAAAAAATAAATCATCCCCAACCCCAGCAGGTCCCCTCCTTAATCTTGGAGCAATTAGTGTCACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

322

Amino Acids

35.39

Weight (kDa)

9.53

Isoelectric Point (pI)

54.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 131 - 177 7e-11 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014417)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G56840
fragaria_vesca FvH4_1g07170 FvH4_1g07170
malus_domestica MD02G1076300.v1.1 MD15G1204700.v1.1
prunus_persica Prupe.7G212300_v2.0.a1
pyrus_communis pycom02g06060 pycom15g18170
rosa_chinensis RchiOBHm_Chr2g0093071
rosa_laevigata RLG00000016365
rosa_roxburghii Rroxscaffold_2G00148540
rosa_rugosa Rorug02G0032200
rosa_samantha Rh2AG077700 Rh2BG079100 Rh2CG081500 Rh2DG076600
rosa_wichuraiana Rw2G006850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 241, 244
AatII GACGTC 1 cut(s) 245
Acc16I TGCGCA 2 cut(s) 55, 319
Acc36I ACCTGC 2 cut(s) 59, 917
AciI CCGC 1 cut(s) 775
AclWI GGATC 2 cut(s) 617, 861
AcoI YGGCCR 2 cut(s) 666, 776
AcsI RAATTY 2 cut(s) 58, 820
AcyI GRCGYC 2 cut(s) 111, 242
AdeI CACNNNGTG 1 cut(s) 23
AfaI GTAC 3 cut(s) 82, 760, 849
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 2 cut(s) 291, 698
AhlI ACTAGT 3 cut(s) 74, 83, 881
AluBI AGCT 2 cut(s) 332, 862
AluI AGCT 2 cut(s) 332, 862
Alw21I GWGCWC 3 cut(s) 17, 414, 864
Alw26I GTCTC 2 cut(s) 288, 362
AlwI GGATC 2 cut(s) 617, 861
Ama87I CYCGRG 1 cut(s) 434
AoxI GGCC 3 cut(s) 34, 666, 776
ApeKI GCWGC 3 cut(s) 594, 772, 872
ApoI RAATTY 2 cut(s) 58, 820
Asp700I GAANNNNTTC 1 cut(s) 212
AspLEI GCGC 2 cut(s) 56, 320
AspS9I GGNCC 2 cut(s) 48, 929
AsuHPI GGTGA 1 cut(s) 464
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 2 cut(s) 48, 929
BalI TGGCCA 1 cut(s) 668
BanII GRGCYC 1 cut(s) 864
BbsI GAAGAC 1 cut(s) 144
Bbv12I GWGCWC 3 cut(s) 17, 414, 864
BbvI GCAGC 3 cut(s) 606, 784, 859
BccI CCATC 2 cut(s) 274, 344
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 2 cut(s) 288, 362
BcuI ACTAGT 3 cut(s) 74, 83, 881
BfaI CTAG 7 cut(s) 45, 75, 84, 471, 570, 882, 893
BfuAI ACCTGC 2 cut(s) 59, 917
BisI GCNGC 4 cut(s) 595, 773, 776, 873
BlsI GCNGC 4 cut(s) 596, 774, 777, 874
BmcAI AGTACT 2 cut(s) 82, 760
Bme18I GGWCC 2 cut(s) 48, 929
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 2 cut(s) 48, 929
BmiI GGNNCC 1 cut(s) 931
BmsI GCATC 2 cut(s) 329, 474
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 502, 534
BpmI CTGGAG 1 cut(s) 478
BpuEI CTTGAG 1 cut(s) 878
Bsa29I ATCGAT 1 cut(s) 801
BsaBI GATNNNNATC 1 cut(s) 132
BsaHI GRCGYC 2 cut(s) 111, 242
BsaI GGTCTC 1 cut(s) 362
BsaJI CCNNGG 2 cut(s) 300, 395
BsaWI WCCGGW 2 cut(s) 414, 850
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse118I RCCGGY 1 cut(s) 778
Bse1I ACTGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 705
Bse8I GATNNNNATC 1 cut(s) 132
BseCI ATCGAT 1 cut(s) 801
BseDI CCNNGG 2 cut(s) 300, 395
BseGI GGATG 2 cut(s) 310, 911
BseJI GATNNNNATC 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMI GCAATG 1 cut(s) 705
BseMII CTCAG 3 cut(s) 533, 547, 782
BseNI ACTGG 1 cut(s) 461
BseRI GAGGAG 1 cut(s) 422
BseX3I CGGCCG 1 cut(s) 776
BseXI GCAGC 3 cut(s) 606, 784, 859
BseYI CCCAGC 1 cut(s) 922
BsgI GTGCAG 1 cut(s) 858
Bsh1285I CGRYCG 1 cut(s) 779
BshFI GGCC 3 cut(s) 36, 668, 778
BshVI ATCGAT 1 cut(s) 801
BsiEI CGRYCG 1 cut(s) 779
BsiHKAI GWGCWC 3 cut(s) 17, 414, 864
BsiHKCI CYCGRG 1 cut(s) 434
BsiSI CCGG 3 cut(s) 415, 779, 851
BslFI GGGAC 1 cut(s) 915
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 2 cut(s) 288, 362
BsmFI GGGAC 1 cut(s) 915
BsnI GGCC 3 cut(s) 36, 668, 778
Bso31I GGTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 3 cut(s) 17, 414, 864
Bsp143I GATC 5 cut(s) 127, 622, 730, 798, 853
Bsp19I CCATGG 2 cut(s) 300, 395
BspACI CCGC 1 cut(s) 775
BspANI GGCC 3 cut(s) 36, 668, 778
BspCNI CTCAG 3 cut(s) 532, 546, 781
BspDI ATCGAT 1 cut(s) 801
BspHI TCATGA 1 cut(s) 144
BspLI GGNNCC 1 cut(s) 931
BspMI ACCTGC 2 cut(s) 59, 917
BspPI GGATC 2 cut(s) 617, 861
BspQI GCTCTTC 1 cut(s) 110
BspTNI GGTCTC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 705
BsrFI RCCGGY 1 cut(s) 778
BsrI ACTGG 1 cut(s) 461
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 2 cut(s) 300, 395
BssMI GATC 5 cut(s) 127, 622, 730, 798, 853
BssNI GRCGYC 2 cut(s) 111, 242
BssT1I CCWWGG 2 cut(s) 300, 395
Bst4CI ACNGT 3 cut(s) 356, 685, 737
Bst6I CTCTTC 3 cut(s) 110, 259, 399
BstACI GRCGYC 2 cut(s) 111, 242
BstAPI GCANNNNNTGC 2 cut(s) 12, 225
BstC8I GCNNGC 4 cut(s) 230, 540, 544, 870
BstDEI CTNAG 4 cut(s) 519, 533, 727, 768
BstDSI CCRYGG 2 cut(s) 300, 395
BstF5I GGATG 2 cut(s) 310, 911
BstHHI GCGC 2 cut(s) 56, 320
BstKTI GATC 5 cut(s) 130, 625, 733, 801, 856
BstMAI GTCTC 2 cut(s) 288, 362
BstMBI GATC 5 cut(s) 127, 622, 730, 798, 853
BstMCI CGRYCG 1 cut(s) 779
BstMWI GCNNNNNNNGC 3 cut(s) 12, 225, 515
BstV1I GCAGC 3 cut(s) 606, 784, 859
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
BstZI CGGCCG 1 cut(s) 776
Bsu15I ATCGAT 1 cut(s) 801
BsuRI GGCC 3 cut(s) 36, 668, 778
BsuTUI ATCGAT 1 cut(s) 801
BtgI CCRYGG 2 cut(s) 300, 395
BtsCI GGATG 2 cut(s) 310, 911
BtsI GCAGTG 1 cut(s) 717
BtsIMutI CAGTG 2 cut(s) 690, 717
BveI ACCTGC 2 cut(s) 59, 917
Cac8I GCNNGC 4 cut(s) 230, 540, 544, 870
CciI TCATGA 1 cut(s) 144
CfoI GCGC 2 cut(s) 56, 320
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 2 cut(s) 48, 929
ClaI ATCGAT 1 cut(s) 801
CseI GACGC 2 cut(s) 100, 828
Csp6I GTAC 3 cut(s) 81, 759, 848
CviQI GTAC 3 cut(s) 81, 759, 848
DdeI CTNAG 4 cut(s) 519, 533, 727, 768
DpnI GATC 5 cut(s) 129, 624, 732, 800, 855
DpnII GATC 5 cut(s) 127, 622, 730, 798, 853
DraIII CACNNNGTG 1 cut(s) 23
DrdI GACNNNNNNGTC 2 cut(s) 241, 244
DseDI GACNNNNNNGTC 2 cut(s) 241, 244
EaeI YGGCCR 2 cut(s) 666, 776
EagI CGGCCG 1 cut(s) 776
Eam1104I CTCTTC 3 cut(s) 110, 259, 399
EarI CTCTTC 3 cut(s) 110, 259, 399
Ecl136II GAGCTC 1 cut(s) 862
EclXI CGGCCG 1 cut(s) 776
Eco130I CCWWGG 2 cut(s) 300, 395
Eco24I GRGCYC 1 cut(s) 864
Eco31I GGTCTC 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 48, 929
Eco52I CGGCCG 1 cut(s) 776
Eco53kI GAGCTC 1 cut(s) 862
Eco88I CYCGRG 1 cut(s) 434
EcoICRI GAGCTC 1 cut(s) 862
EcoO109I RGGNCCY 2 cut(s) 48, 929
EcoRI GAATTC 1 cut(s) 820
EcoT14I CCWWGG 2 cut(s) 300, 395
EcoT38I GRGCYC 1 cut(s) 864
ErhI CCWWGG 2 cut(s) 300, 395
FaqI GGGAC 1 cut(s) 915
FauNDI CATATG 1 cut(s) 362
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 4 cut(s) 595, 773, 776, 873
FokI GGATG 2 cut(s) 317, 898
FriOI GRGCYC 1 cut(s) 864
Fsp4HI GCNGC 4 cut(s) 595, 773, 776, 873
FspBI CTAG 7 cut(s) 45, 75, 84, 471, 570, 882, 893
FspI TGCGCA 2 cut(s) 55, 319
GlaI GCGC 2 cut(s) 55, 319
GluI GCNGC 4 cut(s) 595, 773, 776, 873
GsaI CCCAGC 1 cut(s) 926
GsuI CTGGAG 1 cut(s) 478
HaeIII GGCC 3 cut(s) 36, 668, 778
HapII CCGG 3 cut(s) 415, 779, 851
HgaI GACGC 2 cut(s) 100, 828
HhaI GCGC 2 cut(s) 56, 320
Hin1I GRCGYC 2 cut(s) 111, 242
Hin6I GCGC 2 cut(s) 54, 318
HinP1I GCGC 2 cut(s) 54, 318
HindIII AAGCTT 1 cut(s) 330
HinfI GANTC 3 cut(s) 432, 511, 674
HpaII CCGG 3 cut(s) 415, 779, 851
HphI GGTGA 1 cut(s) 464
Hpy188I TCNGA 5 cut(s) 65, 325, 352, 431, 522
Hpy188III TCNNGA 7 cut(s) 125, 145, 291, 436, 808, 857, 893
Hpy99I CGWCG 5 cut(s) 238, 241, 244, 247, 567
HpyAV CCTTC 1 cut(s) 297
HpyCH4III ACNGT 3 cut(s) 356, 685, 737
HpyCH4IV ACGT 4 cut(s) 242, 419, 565, 754
HpyCH4V TGCA 2 cut(s) 710, 875
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 225, 515
HpyF3I CTNAG 4 cut(s) 519, 533, 727, 768
HpySE526I ACGT 4 cut(s) 242, 419, 565, 754
Hsp92I GRCGYC 2 cut(s) 111, 242
HspAI GCGC 2 cut(s) 54, 318
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 5 cut(s) 127, 622, 730, 798, 853
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 2 cut(s) 409, 947
Lsp1109I GCAGC 3 cut(s) 606, 784, 859
LweI GCATC 2 cut(s) 329, 474
MaeI CTAG 7 cut(s) 45, 75, 84, 471, 570, 882, 893
MaeII ACGT 4 cut(s) 242, 419, 565, 754
MaeIII GTNAC 4 cut(s) 452, 481, 641, 958
MalI GATC 5 cut(s) 129, 624, 732, 800, 855
MboI GATC 5 cut(s) 127, 622, 730, 798, 853
MboII GAAGA 8 cut(s) 97, 144, 217, 246, 252, 267, 416, 819
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 3 cut(s) 17, 414, 864
MlsI TGGCCA 1 cut(s) 668
MluCI AATT 7 cut(s) 58, 172, 271, 475, 627, 820, 951
MluNI TGGCCA 1 cut(s) 668
MlyI GAGTC 2 cut(s) 426, 520
MmeI TCCRAC 2 cut(s) 73, 139
MnlI CCTC 8 cut(s) 59, 262, 400, 455, 584, 699, 756, 944
Mox20I TGGCCA 1 cut(s) 668
MroXI GAANNNNTTC 1 cut(s) 212
MscI TGGCCA 1 cut(s) 668
MseI TTAA 1 cut(s) 939
MslI CAYNNNNRTG 2 cut(s) 200, 710
Msp20I TGGCCA 1 cut(s) 668
MspA1I CMGCKG 1 cut(s) 775
MspI CCGG 3 cut(s) 415, 779, 851
MwoI GCNNNNNNNGC 3 cut(s) 12, 225, 515
NcoI CCATGG 2 cut(s) 300, 395
NdeI CATATG 1 cut(s) 362
NdeII GATC 5 cut(s) 127, 622, 730, 798, 853
NlaIV GGNNCC 1 cut(s) 931
NmuCI GTSAC 4 cut(s) 452, 481, 641, 958
NsbI TGCGCA 2 cut(s) 55, 319
PaeR7I CTCGAG 1 cut(s) 434
PagI TCATGA 1 cut(s) 144
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 3 cut(s) 242, 798, 836
PdmI GAANNNNTTC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 674
PflFI GACNNNGTC 2 cut(s) 241, 244
PkrI GCNGC 4 cut(s) 596, 774, 777, 874
PleI GAGTC 2 cut(s) 426, 519
PpsI GAGTC 2 cut(s) 426, 519
PpuMI RGGWCCY 2 cut(s) 48, 929
Psp124BI GAGCTC 1 cut(s) 864
Psp5II RGGWCCY 2 cut(s) 48, 929
PspFI CCCAGC 1 cut(s) 922
PspN4I GGNNCC 1 cut(s) 931
PspPI GGNCC 2 cut(s) 48, 929
PspPPI RGGWCCY 2 cut(s) 48, 929
PsuI RGATCY 1 cut(s) 853
PsyI GACNNNGTC 2 cut(s) 241, 244
RsaI GTAC 3 cut(s) 82, 760, 849
RsaNI GTAC 3 cut(s) 81, 759, 848
RseI CAYNNNNRTG 2 cut(s) 200, 710
SacI GAGCTC 1 cut(s) 864
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 1 cut(s) 939
SatI GCNGC 4 cut(s) 595, 773, 776, 873
Sau3AI GATC 5 cut(s) 127, 622, 730, 798, 853
Sau96I GGNCC 2 cut(s) 48, 929
ScaI AGTACT 2 cut(s) 82, 760
SchI GAGTC 2 cut(s) 426, 520
SduI GDGCHC 3 cut(s) 17, 414, 864
SetI ASST 9 cut(s) 53, 245, 334, 422, 568, 748, 757, 864, 931
SfaNI GCATC 2 cut(s) 329, 474
Sfr274I CTCGAG 1 cut(s) 434
SinI GGWCC 2 cut(s) 48, 929
SlaI CTCGAG 1 cut(s) 434
SmiMI CAYNNNNRTG 2 cut(s) 200, 710
SmlI CTYRAG 2 cut(s) 434, 857
SmoI CTYRAG 2 cut(s) 434, 857
SpeI ACTAGT 3 cut(s) 74, 83, 881
Sse9I AATT 7 cut(s) 58, 172, 271, 475, 627, 820, 951
SsiI CCGC 1 cut(s) 775
SspI AATATT 2 cut(s) 313, 649
SspMI CTAG 7 cut(s) 45, 75, 84, 471, 570, 882, 893
SstI GAGCTC 1 cut(s) 864
StyI CCWWGG 2 cut(s) 300, 395
TaaI ACNGT 3 cut(s) 356, 685, 737
TaiI ACGT 4 cut(s) 245, 422, 568, 757
TaqI TCGA 3 cut(s) 435, 801, 830
TasI AATT 7 cut(s) 58, 172, 271, 475, 627, 820, 951
TatI WGTACW 2 cut(s) 80, 758
TauI GCSGC 1 cut(s) 778
TfiI GAWTC 1 cut(s) 674
Tru1I TTAA 1 cut(s) 939
Tru9I TTAA 1 cut(s) 939
TscAI CASTG 2 cut(s) 690, 717
TseFI GTSAC 4 cut(s) 452, 481, 641, 958
TseI GCWGC 3 cut(s) 594, 772, 872
Tsp45I GTSAC 4 cut(s) 452, 481, 641, 958
TspDTI ATGAA 9 cut(s) 110, 144, 179, 218, 246, 267, 321, 813, 827
TspGWI ACGGA 1 cut(s) 416
TspRI CASTG 2 cut(s) 690, 717
Tth111I GACNNNGTC 2 cut(s) 241, 244
VpaK11BI GGWCC 2 cut(s) 48, 929
XapI RAATTY 2 cut(s) 58, 820
XbaI TCTAGA 1 cut(s) 892
XhoI CTCGAG 1 cut(s) 434
XmnI GAANNNNTTC 1 cut(s) 212
XspI CTAG 7 cut(s) 45, 75, 84, 471, 570, 882, 893
ZraI GACGTC 1 cut(s) 243
ZrmI AGTACT 2 cut(s) 82, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.