pycom02g07520

Transmembrane protein 184 homolog DDB_G0279555

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012223
Physical Location & Seq
Reverse (-)
5253527 .. 5255344
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1068 bp
ATGATTTTATCCTTGTGGAACCCGAACCTTTCTCTTGCCTGTGACATTTTAAGAAACTGTTACGAAGCATTTGCCTTGTATTCTTTCGGAAGCTACTTAGTTGCTTGTCTCGGAGGTGAAAGAAAAGTCATAGAACTACTTGAAAACCAATCGGAAAAACTGCTCAACAAACCACTGATAGAAGGGAGGGAAGACGAGGATCACACCGTGCCACATTGGTCCCTTCGCAACTTCTTCTTAAGACCATCTGTTCTTGGGAAACATTTGCTCAATATAGAAAAATTTGGCCTTGTACAATATATGATTCTGAAGACAGTTTGTGCATTCTTGGCTTTAGTGTTGGAGCTCTTTGGTGTGTATGGAGACGGAGAATTTAAGTGGTATTACGGGTATCCATACATGGCTGTTGTACTGAACTTCAGCCAGATGTGGGCATTGTATTGCCTTGTGCAATTCTACAATGTAACACACGAAAGACTTGAACCTATTAAGCCGCTTGCAAAGTTCATCAGCTTTAAGGCCATTGTGTTCGCCACTTGGTGGCAAGGTGTGGGCATCGCGTTATTATGCACATTCAGTGTTCTTCCTAAAGAGGTTAAACTACAAAGCGGCTTGCAGAATTTCTTGATTTGTATTGAAATGGCAATTGCAGCAGTTGCACATGTGTTTGTCTTTTCAACGGGACCATACCATTACATTACGGCATACGAGTATGGGAAGGTCACCACTGAAACAACCAAGGCAGAAGTGAAGTTGGAGGCAGGTGACGCCCCAGTCAGGCTCGAAAAAACAGAGACCAAGGTCGAAGCGCCTGGAACAAGTATCACTGAGAGTGTTCAGGACATTGTTGTTGACGGTGGTCAGCGTGTTGTCAAGGATGTTGTGTTGACCATAAATCAAGCAATAGGCCCAGTTGAGAAGGGGGTCGAGAAGGGCGTGACGAAGATCCAGGAGACGCTCCATCACAGAACAGTGGACTCGGAATCGGGAGAACACGAAGATAAGTCAGAAGTAGAAGTTGAGGAACAGGTCGGAAATACTGTCAGAGAAACTCATATCGACCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

356

Amino Acids

40.04

Weight (kDa)

5.3

Isoelectric Point (pI)

39.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 2 - 230 4.1e-72 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23070
fragaria_vesca FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970
malus_domestica MD02G1095200.v1.1
prunus_persica Prupe.7G196000_v2.0.a1
pyrus_communis pycom02g07520
rosa_chinensis RchiOBHm_Chr2g0095421
rosa_laevigata RLG00000016564
rosa_multiflora Rmu_co8230917.1_g000001 Rmu_sc0010847.1_g000005
rosa_samantha Rh2AG098900 Rh2BG100100 Rh2CG102100 Rh2DG099700
rosa_wichuraiana Rw2G007470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 752
AasI GACNNNNNNGTC 1 cut(s) 773
Acc36I ACCTGC 1 cut(s) 752
AccB7I CCANNNNNTGG 1 cut(s) 540
AccII CGCG 1 cut(s) 560
AciI CCGC 2 cut(s) 494, 609
AclWI GGATC 2 cut(s) 207, 940
AcsI RAATTY 3 cut(s) 281, 371, 619
AcuI CTGAAG 2 cut(s) 329, 403
AcyI GRCGYC 1 cut(s) 768
AdeI CACNNNGTG 2 cut(s) 208, 540
AfaI GTAC 2 cut(s) 294, 411
AfiI CCNNNNNNNGG 3 cut(s) 430, 540, 777
AflII CTTAAG 1 cut(s) 238
AflIII ACRYGT 1 cut(s) 661
AgsI TTSAA 4 cut(s) 143, 482, 638, 678
AjnI CCWGG 2 cut(s) 811, 948
AluBI AGCT 3 cut(s) 93, 346, 513
AluI AGCT 3 cut(s) 93, 346, 513
Alw21I GWGCWC 1 cut(s) 348
Alw26I GTCTC 4 cut(s) 113, 357, 788, 947
AlwI GGATC 2 cut(s) 207, 940
AoxI GGCC 3 cut(s) 286, 519, 907
ApeKI GCWGC 1 cut(s) 650
ApoI RAATTY 3 cut(s) 281, 371, 619
AspLEI GCGC 1 cut(s) 811
AspS9I GGNCC 3 cut(s) 219, 683, 908
AsuHPI GGTGA 3 cut(s) 128, 715, 776
AvaII GGWCC 2 cut(s) 219, 683
BanII GRGCYC 1 cut(s) 348
BbsI GAAGAC 2 cut(s) 198, 317
Bbv12I GWGCWC 1 cut(s) 348
BbvI GCAGC 1 cut(s) 662
BccI CCATC 2 cut(s) 253, 969
BceAI ACGGC 1 cut(s) 717
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BciT130I CCWGG 2 cut(s) 813, 950
BciVI GTATCC 1 cut(s) 402
BcoDI GTCTC 4 cut(s) 113, 357, 788, 947
BfmI CTRYAG 1 cut(s) 1064
BfoI RGCGCY 1 cut(s) 812
BfrI CTTAAG 1 cut(s) 238
BfuAI ACCTGC 1 cut(s) 752
BfuI GTATCC 1 cut(s) 402
BisI GCNGC 3 cut(s) 494, 610, 651
BlsI GCNGC 3 cut(s) 495, 611, 652
Bme1390I CCNGG 2 cut(s) 813, 950
Bme18I GGWCC 2 cut(s) 219, 683
BmgT120I GGNCC 3 cut(s) 219, 683, 908
BmiI GGNNCC 3 cut(s) 20, 221, 684
BmrFI CCNGG 2 cut(s) 813, 950
BmrI ACTGGG 2 cut(s) 767, 905
BmsI GCATC 1 cut(s) 564
BmuI ACTGGG 2 cut(s) 767, 905
BoxI GACNNNNGTC 2 cut(s) 800, 858
BpiI GAAGAC 2 cut(s) 198, 317
BsaHI GRCGYC 1 cut(s) 768
BsaI GGTCTC 1 cut(s) 788
BsaJI CCNNGG 2 cut(s) 738, 798
Bsc4I CCNNNNNNNGG 3 cut(s) 430, 540, 777
Bse1I ACTGG 2 cut(s) 773, 911
BseBI CCWGG 2 cut(s) 813, 950
BseDI CCNNGG 2 cut(s) 738, 798
BseGI GGATG 1 cut(s) 883
BseLI CCNNNNNNNGG 3 cut(s) 430, 540, 777
BseMII CTCAG 1 cut(s) 819
BseNI ACTGG 2 cut(s) 773, 911
BseXI GCAGC 1 cut(s) 662
Bsh1236I CGCG 1 cut(s) 560
BshFI GGCC 3 cut(s) 288, 521, 909
BsiHKAI GWGCWC 1 cut(s) 348
BslFI GGGAC 2 cut(s) 205, 696
BslI CCNNNNNNNGG 3 cut(s) 430, 540, 777
BsmAI GTCTC 4 cut(s) 113, 357, 788, 947
BsmBI CGTCTC 2 cut(s) 357, 947
BsmFI GGGAC 2 cut(s) 205, 696
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 3 cut(s) 288, 521, 909
Bso31I GGTCTC 1 cut(s) 788
Bsp1286I GDGCHC 1 cut(s) 348
Bsp1407I TGTACA 1 cut(s) 292
Bsp143I GATC 2 cut(s) 199, 945
BspACI CCGC 2 cut(s) 494, 609
BspANI GGCC 3 cut(s) 288, 521, 909
BspCNI CTCAG 1 cut(s) 820
BspFNI CGCG 1 cut(s) 560
BspLI GGNNCC 3 cut(s) 20, 221, 684
BspMI ACCTGC 1 cut(s) 752
BspPI GGATC 2 cut(s) 207, 940
BspTI CTTAAG 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 788
BsrGI TGTACA 1 cut(s) 292
BsrI ACTGG 2 cut(s) 773, 911
BssECI CCNNGG 2 cut(s) 738, 798
BssMI GATC 2 cut(s) 199, 945
BssNI GRCGYC 1 cut(s) 768
BssT1I CCWWGG 2 cut(s) 738, 798
Bst2UI CCWGG 2 cut(s) 813, 950
Bst4CI ACNGT 6 cut(s) 59, 208, 316, 857, 973, 1042
BstACI GRCGYC 1 cut(s) 768
BstAFI CTTAAG 1 cut(s) 238
BstAPI GCANNNNNTGC 1 cut(s) 656
BstAUI TGTACA 1 cut(s) 292
BstC8I GCNNGC 2 cut(s) 498, 614
BstDEI CTNAG 2 cut(s) 97, 828
BstEII GGTNACC 1 cut(s) 721
BstF5I GGATG 1 cut(s) 883
BstFNI CGCG 1 cut(s) 560
BstH2I RGCGCY 1 cut(s) 812
BstHHI GCGC 1 cut(s) 811
BstKTI GATC 2 cut(s) 202, 948
BstMAI GTCTC 4 cut(s) 113, 357, 788, 947
BstMBI GATC 2 cut(s) 199, 945
BstMWI GCNNNNNNNGC 4 cut(s) 329, 650, 656, 767
BstNI CCWGG 2 cut(s) 813, 950
BstNSI RCATGY 1 cut(s) 665
BstPAI GACNNNNGTC 2 cut(s) 800, 858
BstPI GGTNACC 1 cut(s) 721
BstSCI CCNGG 2 cut(s) 811, 948
BstSFI CTRYAG 1 cut(s) 1064
BstUI CGCG 1 cut(s) 560
BstV1I GCAGC 1 cut(s) 662
BstV2I GAAGAC 2 cut(s) 198, 317
BstX2I RGATCY 1 cut(s) 945
BstYI RGATCY 1 cut(s) 945
BsuI GTATCC 1 cut(s) 402
BsuRI GGCC 3 cut(s) 288, 521, 909
BtgZI GCGATG 1 cut(s) 541
BtsCI GGATG 1 cut(s) 883
BtsIMutI CAGTG 5 cut(s) 173, 583, 726, 825, 978
BveI ACCTGC 1 cut(s) 752
Cac8I GCNNGC 2 cut(s) 498, 614
CfoI GCGC 1 cut(s) 811
Cfr13I GGNCC 3 cut(s) 219, 683, 908
CseI GACGC 2 cut(s) 776, 964
Csp6I GTAC 2 cut(s) 293, 410
CviAII CATG 2 cut(s) 400, 662
CviQI GTAC 2 cut(s) 293, 410
DdeI CTNAG 2 cut(s) 97, 828
DpnI GATC 2 cut(s) 201, 947
DpnII GATC 2 cut(s) 199, 945
DraIII CACNNNGTG 2 cut(s) 208, 540
DrdI GACNNNNNNGTC 1 cut(s) 773
DseDI GACNNNNNNGTC 1 cut(s) 773
Ecl136II GAGCTC 1 cut(s) 346
Eco130I CCWWGG 2 cut(s) 738, 798
Eco24I GRGCYC 1 cut(s) 348
Eco31I GGTCTC 1 cut(s) 788
Eco47I GGWCC 2 cut(s) 219, 683
Eco53kI GAGCTC 1 cut(s) 346
Eco57I CTGAAG 2 cut(s) 329, 403
Eco91I GGTNACC 1 cut(s) 721
EcoICRI GAGCTC 1 cut(s) 346
EcoO65I GGTNACC 1 cut(s) 721
EcoRII CCWGG 2 cut(s) 811, 948
EcoT14I CCWWGG 2 cut(s) 738, 798
EcoT38I GRGCYC 1 cut(s) 348
ErhI CCWWGG 2 cut(s) 738, 798
Esp3I CGTCTC 2 cut(s) 357, 947
FaeI CATG 2 cut(s) 403, 665
FaqI GGGAC 2 cut(s) 205, 696
FatI CATG 2 cut(s) 399, 661
Fnu4HI GCNGC 3 cut(s) 494, 610, 651
FokI GGATG 1 cut(s) 890
FriOI GRGCYC 1 cut(s) 348
Fsp4HI GCNGC 3 cut(s) 494, 610, 651
GlaI GCGC 1 cut(s) 810
GluI GCNGC 3 cut(s) 494, 610, 651
HaeII RGCGCY 1 cut(s) 812
HaeIII GGCC 3 cut(s) 288, 521, 909
HgaI GACGC 2 cut(s) 776, 964
HhaI GCGC 1 cut(s) 811
Hin1I GRCGYC 1 cut(s) 768
Hin1II CATG 2 cut(s) 403, 665
Hin6I GCGC 1 cut(s) 809
HinP1I GCGC 1 cut(s) 809
HincII GTYRAC 2 cut(s) 853, 888
HindII GTYRAC 2 cut(s) 853, 888
HinfI GANTC 3 cut(s) 304, 977, 983
HphI GGTGA 3 cut(s) 128, 715, 776
Hpy166II GTNNAC 3 cut(s) 853, 888, 976
Hpy188I TCNGA 8 cut(s) 89, 113, 154, 309, 982, 1009, 1034, 1046
Hpy188III TCNNGA 4 cut(s) 625, 839, 928, 987
Hpy8I GTNNAC 3 cut(s) 853, 888, 976
HpyAV CCTTC 5 cut(s) 176, 233, 712, 913, 925
HpyCH4III ACNGT 6 cut(s) 59, 208, 316, 857, 973, 1042
HpyCH4V TGCA 7 cut(s) 323, 451, 500, 570, 616, 650, 659
HpyF10VI GCNNNNNNNGC 4 cut(s) 329, 650, 656, 767
HpyF3I CTNAG 2 cut(s) 97, 828
Hsp92I GRCGYC 1 cut(s) 768
Hsp92II CATG 2 cut(s) 403, 665
HspAI GCGC 1 cut(s) 809
Kzo9I GATC 2 cut(s) 199, 945
LmnI GCTCC 2 cut(s) 343, 963
Lsp1109I GCAGC 1 cut(s) 662
LweI GCATC 1 cut(s) 564
MaeIII GTNAC 6 cut(s) 41, 59, 463, 721, 764, 937
MalI GATC 2 cut(s) 201, 947
MboI GATC 2 cut(s) 199, 945
MboII GAAGA 6 cut(s) 203, 226, 322, 575, 955, 1010
MfeI CAATTG 1 cut(s) 645
MflI RGATCY 1 cut(s) 945
MhlI GDGCHC 1 cut(s) 348
MluCI AATT 5 cut(s) 281, 371, 452, 619, 645
MlyI GAGTC 1 cut(s) 971
MmeI TCCRAC 3 cut(s) 321, 735, 1012
MnlI CCTC 6 cut(s) 107, 180, 190, 586, 751, 1015
MseI TTAA 6 cut(s) 50, 239, 375, 489, 516, 597
MspCI CTTAAG 1 cut(s) 238
MspR9I CCNGG 2 cut(s) 813, 950
MunI CAATTG 1 cut(s) 645
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 2 cut(s) 813, 950
MvnI CGCG 1 cut(s) 560
MwoI GCNNNNNNNGC 4 cut(s) 329, 650, 656, 767
NdeII GATC 2 cut(s) 199, 945
NlaIII CATG 2 cut(s) 403, 665
NlaIV GGNNCC 3 cut(s) 20, 221, 684
NmuCI GTSAC 4 cut(s) 41, 721, 764, 937
NspI RCATGY 1 cut(s) 665
PaqCI CACCTGC 1 cut(s) 752
PciI ACATGT 1 cut(s) 661
PcsI WCGNNNNNNNCGW 1 cut(s) 933
PctI GAATGC 1 cut(s) 323
PfeI GAWTC 2 cut(s) 304, 983
PflMI CCANNNNNTGG 1 cut(s) 540
PfoI TCCNGGA 1 cut(s) 948
PkrI GCNGC 3 cut(s) 495, 611, 652
PleI GAGTC 1 cut(s) 971
PpsI GAGTC 1 cut(s) 971
PscI ACATGT 1 cut(s) 661
PshAI GACNNNNGTC 2 cut(s) 800, 858
Psp124BI GAGCTC 1 cut(s) 348
Psp6I CCWGG 2 cut(s) 811, 948
PspEI GGTNACC 1 cut(s) 721
PspGI CCWGG 2 cut(s) 811, 948
PspN4I GGNNCC 3 cut(s) 20, 221, 684
PspPI GGNCC 3 cut(s) 219, 683, 908
PsuI RGATCY 1 cut(s) 945
RsaI GTAC 2 cut(s) 294, 411
RsaNI GTAC 2 cut(s) 293, 410
SacI GAGCTC 1 cut(s) 348
SaqAI TTAA 6 cut(s) 50, 239, 375, 489, 516, 597
SatI GCNGC 3 cut(s) 494, 610, 651
Sau3AI GATC 2 cut(s) 199, 945
Sau96I GGNCC 3 cut(s) 219, 683, 908
SchI GAGTC 1 cut(s) 971
ScrFI CCNGG 2 cut(s) 813, 950
SduI GDGCHC 1 cut(s) 348
SfaNI GCATC 1 cut(s) 564
SfcI CTRYAG 1 cut(s) 1064
SinI GGWCC 2 cut(s) 219, 683
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 5 cut(s) 281, 371, 452, 619, 645
SsiI CCGC 2 cut(s) 494, 609
SstI GAGCTC 1 cut(s) 348
StyD4I CCNGG 2 cut(s) 811, 948
StyI CCWWGG 2 cut(s) 738, 798
TaaI ACNGT 6 cut(s) 59, 208, 316, 857, 973, 1042
TaqI TCGA 4 cut(s) 783, 804, 927, 1059
TasI AATT 5 cut(s) 281, 371, 452, 619, 645
TatI WGTACW 2 cut(s) 292, 409
TauI GCSGC 2 cut(s) 496, 612
TfiI GAWTC 2 cut(s) 304, 983
Tru1I TTAA 6 cut(s) 50, 239, 375, 489, 516, 597
Tru9I TTAA 6 cut(s) 50, 239, 375, 489, 516, 597
TscAI CASTG 5 cut(s) 180, 583, 733, 832, 978
TseFI GTSAC 4 cut(s) 41, 721, 764, 937
TseI GCWGC 1 cut(s) 650
Tsp45I GTSAC 4 cut(s) 41, 721, 764, 937
TspDTI ATGAA 1 cut(s) 496
TspGWI ACGGA 1 cut(s) 381
TspRI CASTG 5 cut(s) 180, 583, 733, 832, 978
Van91I CCANNNNNTGG 1 cut(s) 540
Vha464I CTTAAG 1 cut(s) 238
VpaK11BI GGWCC 2 cut(s) 219, 683
XapI RAATTY 3 cut(s) 281, 371, 619
XceI RCATGY 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.