Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006680

Physical Location & Seq

Genomic Coordinates Forward (+)

6054783 .. 6054983

Gene Structure 201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGACCAAATTGAATGGCTGCCTGACTCGATAGGAAAGCTTTCGAGATTGGTCTCCCTTGATTTGTCTGAAAACCGGATTCTGGTCCTCCCAACCACCATTGGAGGTCTTTCCTCCTTGACCAAATTGGATTTGCACTCAAACAGGATTGCTCAGCTGCCCGACACTATTGGATCGATCTTCTTAGCCTTGTCTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

67

Amino Acids

7.2

Weight (kDa)

4.94

Isoelectric Point (pI)

32.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	4 - 59	1.3e-08	Leucine-rich repeat region
LRR_8	PF13855	9 - 50	1.2e-08	Leucine rich repeat
LRR_4	PF12799	16 - 54	8.6e-07	Leucine Rich repeats (2 copies)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17440 AT4G35470 AT4G35470
fragaria_vesca	FvH4_1g10070 FvH4_1g10070 FvH4_1g10070
malus_domestica	MD02G1109000.v1.1 MD15G1228200.v1.1
prunus_persica	Prupe.7G186300_v2.0.a1
pyrus_communis	pycom02g08760 pycom02g08770 pycom15g20310
rosa_chinensis	RchiOBHm_Chr2g0096861
rosa_laevigata	RLG00000016674
rosa_multiflora	Rmu_co8410777.1_g000001 Rmu_ssc0000215.1_g000025
rosa_roxburghii	Rroxscaffold_2G00145260 Rroxscaffold_4G00329410 Rroxscaffold_4G00329650
rosa_rugosa	Rorug02G0061500 Rorug02G0061500
rosa_samantha	Rh2AG108900 Rh2BG111000 Rh2CG113100 Rh2DG112200
rosa_wichuraiana	Rw2G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	181
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	1 cut(s)	14
AluBI	AGCT	2 cut(s)	40, 157
AluI	AGCT	2 cut(s)	40, 157
Alw26I	GTCTC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	181
ApeKI	GCWGC	2 cut(s)	19, 157
Asp700I	GAANNNNTTC	1 cut(s)	40
AspS9I	GGNCC	2 cut(s)	4, 85
AvaII	GGWCC	2 cut(s)	4, 85
BbvI	GCAGC	2 cut(s)	6, 144
BcoDI	GTCTC	1 cut(s)	58
BfaI	CTAG	1 cut(s)	199
BisI	GCNGC	2 cut(s)	20, 158
BlpI	GCTNAGC	1 cut(s)	153
BlsI	GCNGC	2 cut(s)	21, 159
Bme18I	GGWCC	2 cut(s)	4, 85
BmgT120I	GGNCC	2 cut(s)	4, 85
Bpu1102I	GCTNAGC	1 cut(s)	153
Bsa29I	ATCGAT	1 cut(s)	176
BsaI	GGTCTC	1 cut(s)	58
BsaWI	WCCGGW	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
BseCI	ATCGAT	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMII	CTCAG	1 cut(s)	167
BseXI	GCAGC	2 cut(s)	6, 144
BshVI	ATCGAT	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	76
BslI	CCNNNNNNNGG	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	58
Bso31I	GGTCTC	1 cut(s)	58
Bsp143I	GATC	2 cut(s)	173, 177
Bsp1720I	GCTNAGC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	166
BspDI	ATCGAT	1 cut(s)	176
BspPI	GGATC	1 cut(s)	181
BspTNI	GGTCTC	1 cut(s)	58
BssMI	GATC	2 cut(s)	173, 177
BstDEI	CTNAG	2 cut(s)	153, 184
BstKTI	GATC	2 cut(s)	176, 180
BstMAI	GTCTC	1 cut(s)	58
BstMBI	GATC	2 cut(s)	173, 177
BstV1I	GCAGC	2 cut(s)	6, 144
Bsu15I	ATCGAT	1 cut(s)	176
BsuTUI	ATCGAT	1 cut(s)	176
Cfr13I	GGNCC	2 cut(s)	4, 85
ClaI	ATCGAT	1 cut(s)	176
CviJI	RGCY	4 cut(s)	19, 40, 157, 188
CviKI_1	RGCY	4 cut(s)	19, 40, 157, 188
DdeI	CTNAG	2 cut(s)	153, 184
DpnI	GATC	2 cut(s)	175, 179
DpnII	GATC	2 cut(s)	173, 177
Eco31I	GGTCTC	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	4, 85
Fnu4HI	GCNGC	2 cut(s)	20, 158
Fsp4HI	GCNGC	2 cut(s)	20, 158
FspBI	CTAG	1 cut(s)	199
GluI	GCNGC	2 cut(s)	20, 158
HapII	CCGG	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	38
HinfI	GANTC	2 cut(s)	26, 79
HpaII	CCGG	1 cut(s)	76
Hpy188I	TCNGA	1 cut(s)	70
Hpy188III	TCNNGA	1 cut(s)	45
HpyCH4V	TGCA	1 cut(s)	136
HpyF3I	CTNAG	2 cut(s)	153, 184
Kzo9I	GATC	2 cut(s)	173, 177
LpnPI	CCDG	4 cut(s)	36, 68, 89, 130
Lsp1109I	GCAGC	2 cut(s)	6, 144
MaeI	CTAG	1 cut(s)	199
MalI	GATC	2 cut(s)	175, 179
MboI	GATC	2 cut(s)	173, 177
MboII	GAAGA	1 cut(s)	172
MluCI	AATT	2 cut(s)	9, 125
MlyI	GAGTC	1 cut(s)	20
MnlI	CCTC	3 cut(s)	98, 98, 124
MroXI	GAANNNNTTC	1 cut(s)	40
MspA1I	CMGCKG	1 cut(s)	157
MspI	CCGG	1 cut(s)	76
NdeII	GATC	2 cut(s)	173, 177
PdmI	GAANNNNTTC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	21, 159
PleI	GAGTC	1 cut(s)	20
PpsI	GAGTC	1 cut(s)	20
PspPI	GGNCC	2 cut(s)	4, 85
PvuII	CAGCTG	1 cut(s)	157
SatI	GCNGC	2 cut(s)	20, 158
Sau3AI	GATC	2 cut(s)	173, 177
Sau96I	GGNCC	2 cut(s)	4, 85
SchI	GAGTC	1 cut(s)	20
SetI	ASST	3 cut(s)	42, 109, 159
SgeI	CNNG	9 cut(s)	35, 40, 57, 71, 88, 95, 130, 157, 173
SinI	GGWCC	2 cut(s)	4, 85
Sse9I	AATT	2 cut(s)	9, 125
SspMI	CTAG	1 cut(s)	199
TaqI	TCGA	3 cut(s)	29, 44, 176
TasI	AATT	2 cut(s)	9, 125
TfiI	GAWTC	1 cut(s)	79
TseI	GCWGC	2 cut(s)	19, 157
VpaK11BI	GGWCC	2 cut(s)	4, 85
XmnI	GAANNNNTTC	1 cut(s)	40
XspI	CTAG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.