Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8410777.1

Orthogroup ID

OG0006680

Physical Location & Seq

Genomic Coordinates Reverse (-)

638 .. 1314

Gene Structure 677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8410777.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ctgcccttcacaatcggatcctgcacttcactcgctgagctgcatttgaatttcaatcagctaagagccctgcccgaggcaattggaaagctcgaaaacttggagatcctcacagttcactacaacagaatcaaagggttgccaacaacaattgggaatcttagcagtttgaaggagcttgatgttagcttcaacgaactcgaatccatacccgagaacttgtgttttgcagtgcgcctcgaaaaactgaatgtgtcaaacaactttgctgacttgacagctttgccgcggtcaattggaaatcttgagatgcttgaagagttggatatcagtgatgatcaaattaggcacttaccactctctttcaggttcttgtcaaaactgaaggttttccgtgccgatgaaacacctttggaagttcccccaagacatgttatccagttgggtcctcaggcagttgtaaagtacatggaagattatgttgccaagatggatgctgcatttcaaccattgaagaagaagaagaagggtttttggttttggttttgctcaaaactctgctccaccaagaactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000122 GO:0000578 GO:0000902 GO:0001654 GO:0001655 GO:0001700 GO:0001708 GO:0001736 GO:0001737 GO:0001738 GO:0001745 GO:0001751 GO:0001752 GO:0001754 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002164 GO:0002165 GO:0002168 GO:0003002 GO:0003006 GO:0003008 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005911 GO:0005918 GO:0005923 GO:0005938 GO:0006355 GO:0006357 GO:0007028 GO:0007043 GO:0007154 GO:0007163 GO:0007164 GO:0007165 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007308 GO:0007309 GO:0007314 GO:0007315 GO:0007318 GO:0007350 GO:0007351 GO:0007389 GO:0007391 GO:0007399 GO:0007423 GO:0007444 GO:0007464 GO:0007472 GO:0007476 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007635 GO:0008104 GO:0008150 GO:0008283 GO:0008285 GO:0008358 GO:0008544 GO:0008593 GO:0008595 GO:0009314 GO:0009416 GO:0009628 GO:0009653 GO:0009790 GO:0009791 GO:0009792 GO:0009798 GO:0009880 GO:0009886 GO:0009887 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009913 GO:0009948 GO:0009952 GO:0009966 GO:0009987 GO:0009994 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0016020 GO:0016043 GO:0016323 GO:0016327 GO:0016328 GO:0016331 GO:0016332 GO:0016333 GO:0016334 GO:0016335 GO:0016336 GO:0019219 GO:0019222 GO:0019953 GO:0019991 GO:0021700 GO:0022008 GO:0022412 GO:0022414 GO:0022607 GO:0023051 GO:0023052 GO:0030010 GO:0030011 GO:0030030 GO:0030054 GO:0030100 GO:0030154 GO:0030182 GO:0030707 GO:0030714 GO:0030855 GO:0030859 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031594 GO:0032501 GO:0032502 GO:0032504 GO:0032879 GO:0032989 GO:0033036 GO:0034329 GO:0034330 GO:0034332 GO:0034333 GO:0035088 GO:0035089 GO:0035090 GO:0035107 GO:0035114 GO:0035120 GO:0035220 GO:0035239 GO:0035282 GO:0035295 GO:0035315 GO:0035316 GO:0035317 GO:0040008 GO:0042048 GO:0042058 GO:0042067 GO:0042127 GO:0042221 GO:0042706 GO:0043296 GO:0043297 GO:0044085 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0044703 GO:0045165 GO:0045169 GO:0045175 GO:0045178 GO:0045186 GO:0045197 GO:0045198 GO:0045199 GO:0045202 GO:0045216 GO:0045570 GO:0045571 GO:0045892 GO:0045926 GO:0045934 GO:0046425 GO:0046530 GO:0046552 GO:0046620 GO:0046621 GO:0048056 GO:0048468 GO:0048469 GO:0048477 GO:0048513 GO:0048519 GO:0048523 GO:0048563 GO:0048569 GO:0048583 GO:0048592 GO:0048598 GO:0048599 GO:0048609 GO:0048638 GO:0048640 GO:0048663 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048863 GO:0048869 GO:0050678 GO:0050680 GO:0050789 GO:0050793 GO:0050794 GO:0050803 GO:0050877 GO:0050890 GO:0050896 GO:0051049 GO:0051093 GO:0051128 GO:0051171 GO:0051172 GO:0051179 GO:0051239 GO:0051241 GO:0051252 GO:0051253 GO:0051704 GO:0051716 GO:0051726 GO:0060255 GO:0060429 GO:0060562 GO:0060581 GO:0060627 GO:0061162 GO:0061245 GO:0061326 GO:0061339 GO:0065007 GO:0065008 GO:0070160 GO:0071840 GO:0071944 GO:0072001 GO:0072002 GO:0072089 GO:0080090 GO:0090162 GO:0090596 GO:0097574 GO:0098590 GO:0099568 GO:0120036 GO:1901184 GO:1902531 GO:1902679 GO:1903506 GO:1903507 GO:1904892 GO:1990794 GO:2000026 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

191

Amino Acids

21.75

Weight (kDa)

7.07

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17440 AT4G35470 AT4G35470
fragaria_vesca	FvH4_1g10070 FvH4_1g10070 FvH4_1g10070
malus_domestica	MD02G1109000.v1.1 MD15G1228200.v1.1
prunus_persica	Prupe.7G186300_v2.0.a1
pyrus_communis	pycom02g08760 pycom02g08770 pycom15g20310
rosa_chinensis	RchiOBHm_Chr2g0096861
rosa_laevigata	RLG00000016674
rosa_multiflora	Rmu_co8410777.1_g000001 Rmu_ssc0000215.1_g000025
rosa_roxburghii	Rroxscaffold_2G00145260 Rroxscaffold_4G00329410 Rroxscaffold_4G00329650
rosa_rugosa	Rorug02G0061500 Rorug02G0061500
rosa_samantha	Rh2AG108900 Rh2BG111000 Rh2CG113100 Rh2DG112200
rosa_wichuraiana	Rw2G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	289
AciI	CCGC	2 cut(s)	287, 289
AclWI	GGATC	3 cut(s)	12, 25, 100
AcsI	RAATTY	1 cut(s)	49
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	467
AfiI	CCNNNNNNNGG	1 cut(s)	76
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	7 cut(s)	49, 55, 172, 193, 317, 506, 514
AluBI	AGCT	6 cut(s)	40, 61, 91, 178, 189, 281
AluI	AGCT	6 cut(s)	40, 61, 91, 178, 189, 281
AlwI	GGATC	3 cut(s)	12, 25, 100
Ama87I	CYCGRG	2 cut(s)	74, 212
ApeKI	GCWGC	2 cut(s)	40, 497
ApoI	RAATTY	1 cut(s)	49
Asp700I	GAANNNNTTC	1 cut(s)	389
AspLEI	GCGC	1 cut(s)	237
AspS9I	GGNCC	1 cut(s)	446
AvaI	CYCGRG	2 cut(s)	74, 212
AvaII	GGWCC	1 cut(s)	446
AxyI	CCTNAGG	1 cut(s)	450
BamHI	GGATCC	1 cut(s)	17
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	2 cut(s)	27, 484
BccI	CCATC	1 cut(s)	484
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BclI	TGATCA	1 cut(s)	337
BfaI	CTAG	1 cut(s)	574
BisI	GCNGC	3 cut(s)	41, 287, 498
BlpI	GCTNAGC	1 cut(s)	36
BlsI	GCNGC	3 cut(s)	42, 288, 499
Bme18I	GGWCC	1 cut(s)	446
BmeT110I	CYCGRG	2 cut(s)	74, 212
BmgT120I	GGNCC	1 cut(s)	446
BmiI	GGNNCC	2 cut(s)	19, 447
BmsI	GCATC	2 cut(s)	300, 484
Bpu1102I	GCTNAGC	1 cut(s)	36
BpuEI	CTTGAG	1 cut(s)	326
BsaJI	CCNNGG	2 cut(s)	75, 287
Bsc4I	CCNNNNNNNGG	1 cut(s)	76
Bse1I	ACTGG	1 cut(s)	439
Bse21I	CCTNAGG	1 cut(s)	450
BseDI	CCNNGG	2 cut(s)	75, 287
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	1 cut(s)	76
BseMII	CTCAG	2 cut(s)	27, 464
BseNI	ACTGG	1 cut(s)	439
BseXI	GCAGC	2 cut(s)	27, 484
BsgI	GTGCAG	1 cut(s)	7
Bsh1236I	CGCG	1 cut(s)	289
BsiHKCI	CYCGRG	2 cut(s)	74, 212
BslI	CCNNNNNNNGG	1 cut(s)	76
BsoBI	CYCGRG	2 cut(s)	74, 212
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	17, 105, 337
Bsp1720I	GCTNAGC	1 cut(s)	36
BspACI	CCGC	2 cut(s)	287, 289
BspCNI	CTCAG	2 cut(s)	28, 463
BspFNI	CGCG	1 cut(s)	289
BspLI	GGNNCC	2 cut(s)	19, 447
BspPI	GGATC	3 cut(s)	12, 25, 100
BsrI	ACTGG	1 cut(s)	439
BssECI	CCNNGG	2 cut(s)	75, 287
BssMI	GATC	3 cut(s)	17, 105, 337
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	36, 62, 161, 450
BstDSI	CCRYGG	1 cut(s)	287
BstENI	CCTNNNNNAGG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	499
BstFNI	CGCG	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	237
BstKTI	GATC	3 cut(s)	20, 108, 340
BstMBI	GATC	3 cut(s)	17, 105, 337
BstNSI	RCATGY	1 cut(s)	434
BstUI	CGCG	1 cut(s)	289
BstV1I	GCAGC	2 cut(s)	27, 484
BstX2I	RGATCY	2 cut(s)	17, 105
BstYI	RGATCY	2 cut(s)	17, 105
Bsu36I	CCTNAGG	1 cut(s)	450
BtgI	CCRYGG	1 cut(s)	287
BtsCI	GGATG	1 cut(s)	499
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	2 cut(s)	237, 337
CfoI	GCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	446
Cfr42I	CCGCGG	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	466
CviAII	CATG	2 cut(s)	431, 469
CviJI	RGCY	7 cut(s)	40, 61, 68, 91, 178, 189, 281
CviKI_1	RGCY	7 cut(s)	40, 61, 68, 91, 178, 189, 281
CviQI	GTAC	1 cut(s)	466
DdeI	CTNAG	4 cut(s)	36, 62, 161, 450
DpnI	GATC	3 cut(s)	19, 107, 339
DpnII	GATC	3 cut(s)	17, 105, 337
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	328
Eco47I	GGWCC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	404
Eco81I	CCTNAGG	1 cut(s)	450
Eco88I	CYCGRG	2 cut(s)	74, 212
EcoNI	CCTNNNNNAGG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	446
EcoRV	GATATC	1 cut(s)	328
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	2 cut(s)	434, 472
FaiI	YATR	4 cut(s)	209, 432, 470, 480
FatI	CATG	2 cut(s)	430, 468
FbaI	TGATCA	1 cut(s)	337
Fnu4HI	GCNGC	3 cut(s)	41, 287, 498
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	3 cut(s)	41, 287, 498
FspBI	CTAG	1 cut(s)	574
GlaI	GCGC	1 cut(s)	236
GluI	GCNGC	3 cut(s)	41, 287, 498
HhaI	GCGC	1 cut(s)	237
Hin1II	CATG	2 cut(s)	434, 472
Hin6I	GCGC	1 cut(s)	235
HinP1I	GCGC	1 cut(s)	235
HinfI	GANTC	3 cut(s)	129, 157, 203
Hpy166II	GTNNAC	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	17
Hpy188III	TCNNGA	1 cut(s)	305
Hpy8I	GTNNAC	1 cut(s)	118
HpyAV	CCTTC	4 cut(s)	16, 166, 379, 520
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	24, 43, 230, 500
HpyF3I	CTNAG	4 cut(s)	36, 62, 161, 450
Hsp92II	CATG	2 cut(s)	434, 472
HspAI	GCGC	1 cut(s)	235
Ksp22I	TGATCA	1 cut(s)	337
KspI	CCGCGG	1 cut(s)	290
Kzo9I	GATC	3 cut(s)	17, 105, 337
LmnI	GCTCC	2 cut(s)	175, 566
LpnPI	CCDG	5 cut(s)	34, 83, 352, 437, 452
Lsp1109I	GCAGC	2 cut(s)	27, 484
LweI	GCATC	2 cut(s)	300, 484
MaeI	CTAG	1 cut(s)	574
MalI	GATC	3 cut(s)	19, 107, 339
MboI	GATC	3 cut(s)	17, 105, 337
MboII	GAAGA	6 cut(s)	329, 485, 526, 529, 532, 535
MfeI	CAATTG	3 cut(s)	81, 150, 294
MflI	RGATCY	2 cut(s)	17, 105
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	5 cut(s)	49, 81, 150, 294, 342
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	4 cut(s)	70, 119, 248, 459
MroXI	GAANNNNTTC	1 cut(s)	389
MspA1I	CMGCKG	1 cut(s)	289
MunI	CAATTG	3 cut(s)	81, 150, 294
MvnI	CGCG	1 cut(s)	289
NdeII	GATC	3 cut(s)	17, 105, 337
NlaIII	CATG	2 cut(s)	434, 472
NlaIV	GGNNCC	2 cut(s)	19, 447
NspI	RCATGY	1 cut(s)	434
PciI	ACATGT	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	389
PfeI	GAWTC	3 cut(s)	129, 157, 203
PkrI	GCNGC	3 cut(s)	42, 288, 499
PpuMI	RGGWCCY	1 cut(s)	446
PscI	ACATGT	1 cut(s)	430
Psp5II	RGGWCCY	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	19, 447
PspPI	GGNCC	1 cut(s)	446
PspPPI	RGGWCCY	1 cut(s)	446
PsuI	RGATCY	2 cut(s)	17, 105
RsaI	GTAC	1 cut(s)	467
RsaNI	GTAC	1 cut(s)	466
SacII	CCGCGG	1 cut(s)	290
SatI	GCNGC	3 cut(s)	41, 287, 498
Sau3AI	GATC	3 cut(s)	17, 105, 337
Sau96I	GGNCC	1 cut(s)	446
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	9 cut(s)	42, 63, 93, 180, 191, 283, 371, 390, 412
SfaNI	GCATC	2 cut(s)	300, 484
Sfr303I	CCGCGG	1 cut(s)	290
SgrBI	CCGCGG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	446
SmlI	CTYRAG	1 cut(s)	305
SmoI	CTYRAG	1 cut(s)	305
Sse9I	AATT	5 cut(s)	49, 81, 150, 294, 342
SsiI	CCGC	2 cut(s)	287, 289
SspMI	CTAG	1 cut(s)	574
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	3 cut(s)	93, 201, 240
TasI	AATT	5 cut(s)	49, 81, 150, 294, 342
TatI	WGTACW	1 cut(s)	465
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	3 cut(s)	129, 157, 203
TscAI	CASTG	2 cut(s)	237, 337
TseI	GCWGC	2 cut(s)	40, 497
TspDTI	ATGAA	1 cut(s)	417
TspGWI	ACGGA	1 cut(s)	383
TspRI	CASTG	2 cut(s)	237, 337
VpaK11BI	GGWCC	1 cut(s)	446
XagI	CCTNNNNNAGG	1 cut(s)	74
XapI	RAATTY	1 cut(s)	49
XceI	RCATGY	1 cut(s)	434
XmnI	GAANNNNTTC	1 cut(s)	389
XspI	CTAG	1 cut(s)	574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.