Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0006680

Physical Location & Seq

Genomic Coordinates Forward (+)

6055394 .. 6055836

Gene Structure 443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g08770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAACATTGGGAACAATTTCGCTGATCTGCGATCCCTGCCAAGGTCTATTGGGAACCTCGAGATGCTTGAAGAGTTGGATATCAGCAACAACCAGATACGAGTTCTCCCAGACTCTTTCAGGATGCTCACTCGACTACGTGTTCTACGTGTTGAAGAAAACCCTCTTGAAGTCCCACCAAGACACATAGCTGAAAAGGGTGCACAAGCTGTTGTTCAATACATGGCTGAGCTTGTCGCGAAAAGAGATGTTAAAGCACAACCTGTTAAGCAGAAAAAGACTTGGGCTCAAATCTGCTGCTTCTCAAGGTCAAACAAAAGGAAGCGCAATGGTGAAGATTATGTAAAAGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8

Protein Analysis

118

Amino Acids

13.49

Weight (kDa)

9.79

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006680)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17440 AT4G35470 AT4G35470
fragaria_vesca	FvH4_1g10070 FvH4_1g10070 FvH4_1g10070
malus_domestica	MD02G1109000.v1.1 MD15G1228200.v1.1
prunus_persica	Prupe.7G186300_v2.0.a1
pyrus_communis	pycom02g08760 pycom02g08770 pycom15g20310
rosa_chinensis	RchiOBHm_Chr2g0096861
rosa_laevigata	RLG00000016674
rosa_multiflora	Rmu_co8410777.1_g000001 Rmu_ssc0000215.1_g000025
rosa_roxburghii	Rroxscaffold_2G00145260 Rroxscaffold_4G00329410 Rroxscaffold_4G00329650
rosa_rugosa	Rorug02G0061500 Rorug02G0061500
rosa_samantha	Rh2AG108900 Rh2BG111000 Rh2CG113100 Rh2DG112200
rosa_wichuraiana	Rw2G008430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	239
AclWI	GGATC	1 cut(s)	27
AfiI	CCNNNNNNNGG	1 cut(s)	42
AflIII	ACRYGT	2 cut(s)	139, 148
AgsI	TTSAA	4 cut(s)	71, 155, 170, 218
AluBI	AGCT	3 cut(s)	191, 209, 232
AluI	AGCT	3 cut(s)	191, 209, 232
Alw21I	GWGCWC	1 cut(s)	205
Alw44I	GTGCAC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	27
Ama87I	CYCGRG	1 cut(s)	59
ApaLI	GTGCAC	1 cut(s)	201
ApeKI	GCWGC	1 cut(s)	297
Asp700I	GAANNNNTTC	1 cut(s)	17
AspLEI	GCGC	1 cut(s)	327
AsuHPI	GGTGA	1 cut(s)	344
AvaI	CYCGRG	1 cut(s)	59
BaeGI	GKGCMC	1 cut(s)	205
BanII	GRGCYC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	284
BisI	GCNGC	1 cut(s)	298
BlpI	GCTNAGC	1 cut(s)	228
BlsI	GCNGC	1 cut(s)	299
BmeT110I	CYCGRG	1 cut(s)	59
BmiI	GGNNCC	1 cut(s)	56
BmsI	GCATC	2 cut(s)	54, 114
Bpu1102I	GCTNAGC	1 cut(s)	228
BpuEI	CTTGAG	1 cut(s)	289
BsaAI	YACGTR	2 cut(s)	140, 149
BsaJI	CCNNGG	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	90, 120
Bsc4I	CCNNNNNNNGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	334
BseDI	CCNNGG	1 cut(s)	41
BseGI	GGATG	1 cut(s)	129
BseLI	CCNNNNNNNGG	1 cut(s)	42
BseMI	GCAATG	1 cut(s)	334
BseMII	CTCAG	1 cut(s)	219
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	1 cut(s)	284
Bsh1236I	CGCG	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	59
BslFI	GGGAC	1 cut(s)	158
BslI	CCNNNNNNNGG	1 cut(s)	42
BsmFI	GGGAC	1 cut(s)	158
BsoBI	CYCGRG	1 cut(s)	59
Bsp1286I	GDGCHC	2 cut(s)	205, 289
Bsp143I	GATC	2 cut(s)	25, 32
Bsp1720I	GCTNAGC	1 cut(s)	228
Bsp68I	TCGCGA	1 cut(s)	239
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	27
BsrDI	GCAATG	1 cut(s)	334
BssECI	CCNNGG	1 cut(s)	41
BssMI	GATC	2 cut(s)	25, 32
BssT1I	CCWWGG	1 cut(s)	41
Bst6I	CTCTTC	1 cut(s)	66
BstBAI	YACGTR	2 cut(s)	140, 149
BstDEI	CTNAG	1 cut(s)	228
BstF5I	GGATG	1 cut(s)	129
BstFNI	CGCG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	327
BstKTI	GATC	2 cut(s)	28, 35
BstMBI	GATC	2 cut(s)	25, 32
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstSLI	GKGCMC	1 cut(s)	205
BstUI	CGCG	1 cut(s)	239
BstV1I	GCAGC	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	129
BtuMI	TCGCGA	1 cut(s)	239
CfoI	GCGC	1 cut(s)	327
CviAII	CATG	1 cut(s)	223
CviJI	RGCY	6 cut(s)	191, 209, 227, 232, 287, 350
CviKI_1	RGCY	6 cut(s)	191, 209, 227, 232, 287, 350
DdeI	CTNAG	1 cut(s)	228
DpnI	GATC	2 cut(s)	27, 34
DpnII	GATC	2 cut(s)	25, 32
Eam1104I	CTCTTC	1 cut(s)	66
EarI	CTCTTC	1 cut(s)	66
Eco130I	CCWWGG	1 cut(s)	41
Eco24I	GRGCYC	1 cut(s)	289
Eco32I	GATATC	1 cut(s)	82
Eco88I	CYCGRG	1 cut(s)	59
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	41
EcoT38I	GRGCYC	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	1 cut(s)	226
FaiI	YATR	3 cut(s)	188, 224, 342
FaqI	GGGAC	1 cut(s)	158
FatI	CATG	1 cut(s)	222
Fnu4HI	GCNGC	1 cut(s)	298
FokI	GGATG	1 cut(s)	136
FriOI	GRGCYC	1 cut(s)	289
Fsp4HI	GCNGC	1 cut(s)	298
GlaI	GCGC	1 cut(s)	326
GluI	GCNGC	1 cut(s)	298
HhaI	GCGC	1 cut(s)	327
Hin1II	CATG	1 cut(s)	226
Hin6I	GCGC	1 cut(s)	325
HinP1I	GCGC	1 cut(s)	325
HinfI	GANTC	1 cut(s)	113
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	1 cut(s)	203
Hpy188III	TCNNGA	4 cut(s)	61, 121, 167, 238
Hpy8I	GTNNAC	1 cut(s)	203
HpyCH4IV	ACGT	2 cut(s)	139, 148
HpyCH4V	TGCA	1 cut(s)	203
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	228
HpySE526I	ACGT	2 cut(s)	139, 148
Hsp92II	CATG	1 cut(s)	226
HspAI	GCGC	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	25, 32
LpnPI	CCDG	5 cut(s)	50, 106, 107, 123, 276
Lsp1109I	GCAGC	1 cut(s)	284
LweI	GCATC	2 cut(s)	54, 114
MaeII	ACGT	2 cut(s)	139, 148
MalI	GATC	2 cut(s)	27, 34
MboI	GATC	2 cut(s)	25, 32
MboII	GAAGA	3 cut(s)	83, 167, 347
MhlI	GDGCHC	2 cut(s)	205, 289
MluCI	AATT	1 cut(s)	16
MlyI	GAGTC	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	57
MnlI	CCTC	2 cut(s)	68, 174
MroXI	GAANNNNTTC	1 cut(s)	17
MseI	TTAA	2 cut(s)	252, 267
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	2 cut(s)	25, 32
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	1 cut(s)	56
NruI	TCGCGA	1 cut(s)	239
PaeR7I	CTCGAG	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	145
PdmI	GAANNNNTTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	299
PleI	GAGTC	1 cut(s)	107
PpsI	GAGTC	1 cut(s)	107
Ppu21I	YACGTR	2 cut(s)	140, 149
PspN4I	GGNNCC	1 cut(s)	56
RruI	TCGCGA	1 cut(s)	239
SaqAI	TTAA	2 cut(s)	252, 267
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	2 cut(s)	25, 32
SchI	GAGTC	1 cut(s)	107
SduI	GDGCHC	2 cut(s)	205, 289
SetI	ASST	9 cut(s)	47, 60, 142, 151, 193, 211, 234, 265, 311
SfaNI	GCATC	2 cut(s)	54, 114
Sfr274I	CTCGAG	1 cut(s)	59
SlaI	CTCGAG	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	59, 304
SmoI	CTYRAG	2 cut(s)	59, 304
Sse9I	AATT	1 cut(s)	16
StyI	CCWWGG	1 cut(s)	41
TaiI	ACGT	2 cut(s)	142, 151
TaqI	TCGA	2 cut(s)	60, 133
TasI	AATT	1 cut(s)	16
Tru1I	TTAA	2 cut(s)	252, 267
Tru9I	TTAA	2 cut(s)	252, 267
TseI	GCWGC	1 cut(s)	297
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	201
XhoI	CTCGAG	1 cut(s)	59
XmnI	GAANNNNTTC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.