Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0011815

Physical Location & Seq

Genomic Coordinates Reverse (-)

6828014 .. 6830666

Gene Structure 2653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTGCACCCTGATCGATCTTGATTATGCTGATCAAGTGTTGGGCTCATTTGTTAAGAAACTCTCTGGAAAAGGAAAAATTCAAGACAGCAGGGCAACAAAACAAGTGGTTGCACTTTTAAGCGCTCCACTTGAGAAATATAATGATATTGTCACGGCTTTGAAGCTTACAAATTATCCTCGCGTCCTGGAATTCCTTGATAGTGGAACAAATAAAGTCATGGCTACTGTTATAATTCAGAGCATTATGAAAAATACAACTCATGTTTTAACTGCCGAGAAGGTCGAAGCTTTGTTTGAATTAATAAAAGGACTTATTGAGGATTTGGATGGGACTCTTAATGATGAGGTTGATGAAGAAGATTTCAAGGAGGAGCAAAATTCAGTTGCGCGACTTATTCAAATGTTTTCTAATGATGATCCCGAAGAGATGTTTAAGATCATATGTACTGTGAAGAAGCACATCCTGGTTGGAGGACCAACGCGTTTGCCCTTTACTATCCCTCCCCTAGTTTTGTCTTCTCTAAAGTTGGTTAGGAAATTGCAAGCCCAGGAAGAAAATCCATTTGGAGACGATGCATCAACCACACCAAAGAAAATTTTTCAGCTCTTGACTCAGACTATTGAGGCTTTGTTGAATGTTCCAGCACCTGAACTGGCATTACGGTTATATTTGCAATGTGCTGAGGCTGCAAATGACTGTGATTTGGAACCCGTTGCCTATGAATTCTTCACCCAAGCATATATTCTTTACGAAGAAGAAATTTCAGATTCGAAAGCACAGGTGACTGCCATTCATCTGATAATCGGGACTCTCCAGAGGATGCATGTATTTGGTGTTGAGAACAGGGATACTTTAACTCACAAAGCCACAGGGTATTCGGCAAAGCTTTTAAAGAAGGCTGATCAGTGCCGAGCTGTTTATGCTTGCTCACATCTCTTCTGGGTCGATCGATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps35

Protein Analysis

320

Amino Acids

35.74

Weight (kDa)

5.13

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps35	PF03635	6 - 315	5.8e-89	Vacuolar protein sorting-associated protein 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17790 AT3G51310
fragaria_vesca	FvH4_1g11410
malus_domestica	MD02G1126400.v1.1 MD15G1242400.v1.1
prunus_persica	Prupe.7G171800_v2.0.a1 Prupe.7G171800_v2.0.a1
pyrus_communis	pycom02g09870 pycom15g21360
rosa_chinensis	RchiOBHm_Chr2g0098981
rosa_laevigata	RLG00000016838
rosa_multiflora	Rmu_sc0000577.1_g000009
rosa_roxburghii	Rroxscaffold_2G00143530
rosa_rugosa	Rorug02G0075400
rosa_samantha	Rh2AG124900 Rh2BG128100 Rh2CG129000 Rh2DG129200
rosa_wichuraiana	Rw2G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	233
AccII	CGCG	3 cut(s)	183, 391, 484
AclWI	GGATC	1 cut(s)	413
AcsI	RAATTY	6 cut(s)	78, 191, 379, 597, 725, 762
AfaI	GTAC	1 cut(s)	448
AfeI	AGCGCT	1 cut(s)	124
AflIII	ACRYGT	1 cut(s)	482
AgsI	TTSAA	6 cut(s)	83, 163, 299, 367, 401, 637
AjnI	CCWGG	3 cut(s)	186, 465, 549
AjuI	GAANNNNNNNTTGG	4 cut(s)	549, 581, 729, 761
AluBI	AGCT	5 cut(s)	166, 290, 607, 889, 917
AluI	AGCT	5 cut(s)	166, 290, 607, 889, 917
Alw21I	GWGCWC	1 cut(s)	8
Alw26I	GTCTC	1 cut(s)	564
Alw44I	GTGCAC	1 cut(s)	4
AlwI	GGATC	1 cut(s)	413
AlwNI	CAGNNNCTG	1 cut(s)	650
Aor51HI	AGCGCT	1 cut(s)	124
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	689
ApoI	RAATTY	6 cut(s)	78, 191, 379, 597, 725, 762
AseI	ATTAAT	1 cut(s)	302
AspLEI	GCGC	2 cut(s)	125, 391
AspS9I	GGNCC	1 cut(s)	476
AsuHPI	GGTGA	2 cut(s)	724, 796
AsuII	TTCGAA	1 cut(s)	773
AvaII	GGWCC	1 cut(s)	476
BaeGI	GKGCMC	1 cut(s)	8
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	510
Bbv12I	GWGCWC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	684
BbvI	GCAGC	1 cut(s)	676
BccI	CCATC	1 cut(s)	323
BceAI	ACGGC	1 cut(s)	171
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	3 cut(s)	188, 467, 551
BciVI	GTATCC	1 cut(s)	844
BclI	TGATCA	2 cut(s)	31, 904
BcoDI	GTCTC	1 cut(s)	564
BfaI	CTAG	1 cut(s)	509
BfoI	RGCGCY	1 cut(s)	126
BfuI	GTATCC	1 cut(s)	844
BisI	GCNGC	1 cut(s)	690
BlsI	GCNGC	1 cut(s)	691
Bme1390I	CCNGG	3 cut(s)	188, 467, 551
Bme18I	GGWCC	1 cut(s)	476
BmgT120I	GGNCC	1 cut(s)	476
BmiI	GGNNCC	1 cut(s)	711
BmrFI	CCNGG	3 cut(s)	188, 467, 551
BmsI	GCATC	3 cut(s)	565, 587, 813
BpiI	GAAGAC	1 cut(s)	510
BpmI	CTGGAG	1 cut(s)	800
Bpu10I	CCTNAGC	1 cut(s)	684
Bpu14I	TTCGAA	1 cut(s)	773
BpuEI	CTTGAG	1 cut(s)	152
Bsa29I	ATCGAT	2 cut(s)	15, 952
BsaJI	CCNNGG	1 cut(s)	549
BsaXI	ACNNNNNCTCC	2 cut(s)	487, 517
Bse1I	ACTGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	683
BseBI	CCWGG	3 cut(s)	188, 467, 551
BseCI	ATCGAT	2 cut(s)	15, 952
BseDI	CCNNGG	1 cut(s)	549
BseGI	GGATG	3 cut(s)	334, 462, 828
BseMI	GCAATG	1 cut(s)	683
BseMII	CTCAG	2 cut(s)	629, 675
BseNI	ACTGG	1 cut(s)	660
BseRI	GAGGAG	1 cut(s)	386
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	676
Bsh1236I	CGCG	3 cut(s)	183, 391, 484
Bsh1285I	CGRYCG	1 cut(s)	952
BshVI	ATCGAT	2 cut(s)	15, 952
BsiEI	CGRYCG	1 cut(s)	952
BsiHKAI	GWGCWC	1 cut(s)	8
BslFI	GGGAC	2 cut(s)	346, 823
BsmAI	GTCTC	1 cut(s)	564
BsmBI	CGTCTC	1 cut(s)	564
BsmFI	GGGAC	2 cut(s)	346, 823
Bsp119I	TTCGAA	1 cut(s)	773
Bsp1286I	GDGCHC	2 cut(s)	8, 47
Bsp143I	GATC	8 cut(s)	12, 16, 31, 418, 438, 904, 949, 953
BspCNI	CTCAG	2 cut(s)	628, 676
BspDI	ATCGAT	2 cut(s)	15, 952
BspFNI	CGCG	3 cut(s)	183, 391, 484
BspHI	TCATGA	1 cut(s)	956
BspLI	GGNNCC	1 cut(s)	711
BspPI	GGATC	1 cut(s)	413
BspT104I	TTCGAA	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	683
BsrI	ACTGG	1 cut(s)	660
BssECI	CCNNGG	1 cut(s)	549
BssMI	GATC	8 cut(s)	12, 16, 31, 418, 438, 904, 949, 953
Bst2UI	CCWGG	3 cut(s)	188, 467, 551
Bst4CI	ACNGT	4 cut(s)	229, 451, 666, 701
Bst6I	CTCTTC	2 cut(s)	420, 944
BstBI	TTCGAA	1 cut(s)	773
BstC8I	GCNNGC	2 cut(s)	546, 928
BstDEI	CTNAG	2 cut(s)	615, 684
BstF5I	GGATG	3 cut(s)	334, 462, 828
BstFNI	CGCG	3 cut(s)	183, 391, 484
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	2 cut(s)	125, 391
BstKTI	GATC	8 cut(s)	15, 19, 34, 421, 441, 907, 952, 956
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	8 cut(s)	12, 16, 31, 418, 438, 904, 949, 953
BstMCI	CGRYCG	1 cut(s)	952
BstMWI	GCNNNNNNNGC	2 cut(s)	689, 923
BstNI	CCWGG	3 cut(s)	188, 467, 551
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	3 cut(s)	186, 465, 549
BstSLI	GKGCMC	1 cut(s)	8
BstUI	CGCG	3 cut(s)	183, 391, 484
BstV1I	GCAGC	1 cut(s)	676
BstV2I	GAAGAC	1 cut(s)	510
Bsu15I	ATCGAT	2 cut(s)	15, 952
BsuI	GTATCC	1 cut(s)	844
BsuTUI	ATCGAT	2 cut(s)	15, 952
BtsCI	GGATG	3 cut(s)	334, 462, 828
BtsIMutI	CAGTG	1 cut(s)	914
Cac8I	GCNNGC	2 cut(s)	546, 928
CaiI	CAGNNNCTG	1 cut(s)	650
CciI	TCATGA	1 cut(s)	956
CfoI	GCGC	2 cut(s)	125, 391
Cfr13I	GGNCC	1 cut(s)	476
ClaI	ATCGAT	2 cut(s)	15, 952
CseI	GACGC	1 cut(s)	172
Csp6I	GTAC	1 cut(s)	447
CspCI	CAANNNNNGTGG	2 cut(s)	87, 122
CviAII	CATG	4 cut(s)	220, 263, 827, 957
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	2 cut(s)	615, 684
DpnI	GATC	8 cut(s)	14, 18, 33, 420, 440, 906, 951, 955
DpnII	GATC	8 cut(s)	12, 16, 31, 418, 438, 904, 949, 953
DraI	TTTAAA	1 cut(s)	894
Eam1104I	CTCTTC	2 cut(s)	420, 944
EarI	CTCTTC	2 cut(s)	420, 944
Eco24I	GRGCYC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	476
Eco47III	AGCGCT	1 cut(s)	124
EcoRI	GAATTC	2 cut(s)	191, 725
EcoRII	CCWGG	3 cut(s)	186, 465, 549
EcoT22I	ATGCAT	2 cut(s)	580, 828
EcoT38I	GRGCYC	1 cut(s)	47
Esp3I	CGTCTC	1 cut(s)	564
FaeI	CATG	4 cut(s)	223, 266, 830, 960
FaqI	GGGAC	2 cut(s)	346, 823
FatI	CATG	4 cut(s)	219, 262, 826, 956
FauNDI	CATATG	1 cut(s)	443
FbaI	TGATCA	2 cut(s)	31, 904
Fnu4HI	GCNGC	1 cut(s)	690
FokI	GGATG	3 cut(s)	341, 449, 835
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	1 cut(s)	690
FspBI	CTAG	1 cut(s)	509
GlaI	GCGC	2 cut(s)	124, 390
GluI	GCNGC	1 cut(s)	690
GsuI	CTGGAG	1 cut(s)	800
HaeII	RGCGCY	1 cut(s)	126
HgaI	GACGC	1 cut(s)	172
HhaI	GCGC	2 cut(s)	125, 391
Hin1II	CATG	4 cut(s)	223, 266, 830, 960
Hin6I	GCGC	2 cut(s)	123, 389
HinP1I	GCGC	2 cut(s)	123, 389
HindIII	AAGCTT	3 cut(s)	164, 288, 887
HinfI	GANTC	4 cut(s)	334, 613, 770, 811
HphI	GGTGA	2 cut(s)	724, 796
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	240, 618, 769, 801
Hpy188III	TCNNGA	8 cut(s)	20, 66, 83, 422, 610, 808, 817, 957
Hpy8I	GTNNAC	1 cut(s)	6
HpyAV	CCTTC	2 cut(s)	274, 892
HpyCH4III	ACNGT	4 cut(s)	229, 451, 666, 701
HpyCH4V	TGCA	7 cut(s)	6, 113, 544, 578, 676, 692, 826
HpyF10VI	GCNNNNNNNGC	2 cut(s)	689, 923
HpyF3I	CTNAG	2 cut(s)	615, 684
Hsp92II	CATG	4 cut(s)	223, 266, 830, 960
HspAI	GCGC	2 cut(s)	123, 389
Ksp22I	TGATCA	2 cut(s)	31, 904
Kzo9I	GATC	8 cut(s)	12, 16, 31, 418, 438, 904, 949, 953
LmnI	GCTCC	2 cut(s)	130, 373
Lsp1109I	GCAGC	1 cut(s)	676
LweI	GCATC	3 cut(s)	565, 587, 813
MaeI	CTAG	1 cut(s)	509
MaeIII	GTNAC	2 cut(s)	151, 784
MalI	GATC	8 cut(s)	14, 18, 33, 420, 440, 906, 951, 955
MboI	GATC	8 cut(s)	12, 16, 31, 418, 438, 904, 949, 953
MhlI	GDGCHC	2 cut(s)	8, 47
MluI	ACGCGT	1 cut(s)	482
MlyI	GAGTC	3 cut(s)	328, 607, 805
MmeI	TCCRAC	1 cut(s)	451
MnlI	CCTC	9 cut(s)	189, 313, 340, 364, 467, 513, 619, 679, 813
Mph1103I	ATGCAT	2 cut(s)	580, 828
MseI	TTAA	8 cut(s)	54, 119, 269, 302, 339, 435, 857, 893
MspR9I	CCNGG	3 cut(s)	188, 467, 551
MvaI	CCWGG	3 cut(s)	188, 467, 551
MvnI	CGCG	3 cut(s)	183, 391, 484
MwoI	GCNNNNNNNGC	2 cut(s)	689, 923
NdeI	CATATG	1 cut(s)	443
NdeII	GATC	8 cut(s)	12, 16, 31, 418, 438, 904, 949, 953
NlaIII	CATG	4 cut(s)	223, 266, 830, 960
NlaIV	GGNNCC	1 cut(s)	711
NmeAIII	GCCGAG	2 cut(s)	301, 938
NmuCI	GTSAC	2 cut(s)	151, 784
NsiI	ATGCAT	2 cut(s)	580, 828
NspI	RCATGY	1 cut(s)	830
NspV	TTCGAA	1 cut(s)	773
PagI	TCATGA	1 cut(s)	956
PfeI	GAWTC	1 cut(s)	770
PfoI	TCCNGGA	1 cut(s)	186
PkrI	GCNGC	1 cut(s)	691
Ple19I	CGATCG	1 cut(s)	952
PleI	GAGTC	3 cut(s)	328, 607, 805
PpsI	GAGTC	3 cut(s)	328, 607, 805
PshBI	ATTAAT	1 cut(s)	302
PsiI	TTATAA	1 cut(s)	233
Psp6I	CCWGG	3 cut(s)	186, 465, 549
PspGI	CCWGG	3 cut(s)	186, 465, 549
PspN4I	GGNNCC	1 cut(s)	711
PspPI	GGNCC	1 cut(s)	476
PsrI	GAACNNNNNNTAC	2 cut(s)	645, 677
PstNI	CAGNNNCTG	1 cut(s)	650
PvuI	CGATCG	1 cut(s)	952
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SaqAI	TTAA	8 cut(s)	54, 119, 269, 302, 339, 435, 857, 893
SatI	GCNGC	1 cut(s)	690
Sau3AI	GATC	8 cut(s)	12, 16, 31, 418, 438, 904, 949, 953
Sau96I	GGNCC	1 cut(s)	476
SchI	GAGTC	3 cut(s)	328, 607, 805
ScrFI	CCNGG	3 cut(s)	188, 467, 551
SduI	GDGCHC	2 cut(s)	8, 47
SetI	ASST	9 cut(s)	168, 285, 292, 351, 609, 652, 786, 891, 919
SfaNI	GCATC	3 cut(s)	565, 587, 813
SfuI	TTCGAA	1 cut(s)	773
SinI	GGWCC	1 cut(s)	476
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SspMI	CTAG	1 cut(s)	509
StyD4I	CCNGG	3 cut(s)	186, 465, 549
TaaI	ACNGT	4 cut(s)	229, 451, 666, 701
TaqI	TCGA	5 cut(s)	15, 285, 773, 948, 952
TatI	WGTACW	1 cut(s)	446
TfiI	GAWTC	1 cut(s)	770
Tru1I	TTAA	8 cut(s)	54, 119, 269, 302, 339, 435, 857, 893
Tru9I	TTAA	8 cut(s)	54, 119, 269, 302, 339, 435, 857, 893
TscAI	CASTG	1 cut(s)	914
TseFI	GTSAC	2 cut(s)	151, 784
TseI	GCWGC	1 cut(s)	689
Tsp45I	GTSAC	2 cut(s)	151, 784
TspDTI	ATGAA	4 cut(s)	263, 369, 738, 785
TspRI	CASTG	1 cut(s)	914
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	476
VspI	ATTAAT	1 cut(s)	302
XapI	RAATTY	6 cut(s)	78, 191, 379, 597, 725, 762
XceI	RCATGY	1 cut(s)	830
XspI	CTAG	1 cut(s)	509
Zsp2I	ATGCAT	2 cut(s)	580, 828

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.