Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0011815

Physical Location & Seq

Genomic Coordinates Forward (+)

11338532 .. 11346500

Gene Structure 7969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG124900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2061 bp

ATGATCTCCGACGGAGTTGAAGACGAAGAGAAGTACCTGGCCGCCGGAATCGCCGGCCTCCAACAGAATGCCTTCTACATGCATCGCGCTCTGGACTCCAACAATCTCAGGGACGCTCTCAAGTACTCGGCCCAGATGCTGTCGGAGCTCCGCACCTCCAAGCTTTCGCCTCACAAATACTACGAGCTCTATATGCGTGCGTTTGATGAATTGAGGAAATTGGAGATGTTCTTCAAGGAGGAGGCTCGACGCGGTTGCTCTATTATTGATTTGTATGAGCTTGTGCAGCATGCTGGTAACATATTGCCCAGATTATATCTTCTGTGTACAGTAGGATCTGTTTACATCAAATCTAAGGAAGCTCCTGCTAAGGATGTCCTGAAAGATCTTGTGGAAATGTCACGTGGCATTCAGAATCCTGTACGTGGGCTCTTTTTAAGGAGTTACCTTTCTCAAGTCAGTAGGGATAAGTTGCCTGATATTGGGTCGGAGTATGAAGGGGATGCGGATACTGTAAGGGATGCTGTTGAGTTTGTTCTCCAAAACTTCACTGAGATGAACAAGCTTTGGGTGCGGATGCAACATCAGGGGCCTGCTAGGGAAAAGGAGAAACGGGAGAAAGAAAGGAGCGAGCTACGTGATCTTGTTGGTAAAAACCTGCATGTTCTCAGTCAGATAGAAGGTGTTGATCTGGATTTGTACAAAGAGACCGTGCTTCCCAGAGTCCTGGAGCAGGTTGTCAATTGTAAAGATGAGCTGGCACAGTTTTATTTGATGGATTGCATTATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGATATATTGTTGGGTGCTTGCCCCCAACTTCAGCCATCTGTTGATATCAAGACAGTGCTATCCCAGTTAATGGAAAGGCTTTCCAACTATGCTGCCTCAAGCATAGAAGTGTTGCCCGAGTTCTTACAAGTAGAAGCTTTTTCTAAACTGAGCAATGCGATTGGAAAGGTGATTGAAGCGCACGTTGACATGCCTGTAATTGGTGTTGTTACTTTGTACTCATCCCTTCTTAAATTTACTCTCCATGTGCATCCGGATCGACTTGATTATGCTGATCAAGTGTTGGGGTCATTTGTTAAGAAGCTCTCCGGAAAAGGAAAAATTGAAGACAGCAGGGCAACAAAACAAGTTGTTGCACTTTTAAGTGCTCCATTGGAGAAATATAATGATATTGTGACTGCTTTGAAGCTTACAAATTATCCCCGTGTCATGGAATTCCTTGATACTGGAACAAATAAAGTCATGGCAACTGTTATAATACAAAGCATTATGAAAAATACAACTCATATATTAACTGCTGAGAAGGTCGAGGCATTGTTTGAATTAATAAAAGGACTTATCGAGGATTTGGATGGGACTCTTCATGATGAGGTTGATGAAGAGGATTTCAAGGAGGAGCAGAATTCTGTTGCGAGACTTATTCAAATGTTCCATAATGAAGATCCAGAAGAGATGTTTAAGATCATAGGTACTGTGCGGAAGCACATCATGTCTGGAGGACCAAGGCGCCTACCCTTTACTGTCCCTCCCCTAGTCTTTAATTCTCTAAAGTTGGTCAGGCAATTGCAAGGAGGACATGAAGATAAAGAAAATCCTTTTGGAGAAGAAGCGTCAACTACACCAAAGAAAATTTTTCAGCTCTTGTCTCAGACTATTGAGGCTCTGTTGAATGTGCCAGCTCCTGAGCTAGCTTTACGGCTGTACTTGCAATGTGCTGAGGCTGCAAATGACTGTGATTTAGAACCTGTTGCGTACGAATTCTTCACCCAAGCATATATTCTCTATGAAGAAGAAATTTCAGATTCGAAAGCACAGGTGACTGCAATTCATTTGATAATTGGGACTCTCCAGAGGATGCATGTATTTGGTGTTGAGAACAGAGATACTTTAACTCACAAAGCCACAGGGTATTCGGCAAAGCTTTTAAAGAAGCCTGATCAGTGCCGAGCTGTTTATGCTTGCTCGCATCTTTTCTGGGTTGACGATCAGGAGAACATGAAGGATGGGGAAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps35

Protein Analysis

686

Amino Acids

78.04

Weight (kDa)

5.29

Isoelectric Point (pI)

45.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps35	PF03635	13 - 686	5.3e-267	Vacuolar protein sorting-associated protein 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0011815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17790 AT3G51310
fragaria_vesca	FvH4_1g11410
malus_domestica	MD02G1126400.v1.1 MD15G1242400.v1.1
prunus_persica	Prupe.7G171800_v2.0.a1 Prupe.7G171800_v2.0.a1
pyrus_communis	pycom02g09870 pycom15g21360
rosa_chinensis	RchiOBHm_Chr2g0098981
rosa_laevigata	RLG00000016838
rosa_multiflora	Rmu_sc0000577.1_g000009
rosa_roxburghii	Rroxscaffold_2G00143530
rosa_rugosa	Rorug02G0075400
rosa_samantha	Rh2AG124900 Rh2BG128100 Rh2CG129000 Rh2DG129200
rosa_wichuraiana	Rw2G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1301
Acc36I	ACCTGC	2 cut(s)	666, 724
AccB1I	GGYRCC	1 cut(s)	1551
AccB7I	CCANNNNNTGG	1 cut(s)	895
AccII	CGCG	2 cut(s)	87, 252
AccIII	TCCGGA	2 cut(s)	1078, 1133
AciI	CCGC	6 cut(s)	42, 151, 252, 506, 574, 1522
AclWI	GGATC	3 cut(s)	343, 1089, 1481
AcoI	YGGCCR	1 cut(s)	39
AcsI	RAATTY	6 cut(s)	1058, 1259, 1447, 1674, 1802, 1839
AcuI	CTGAAG	1 cut(s)	839
AcvI	CACGTG	1 cut(s)	404
AcyI	GRCGYC	1 cut(s)	1552
AfiI	CCNNNNNNNGG	6 cut(s)	425, 482, 733, 895, 1025, 1255
AjnI	CCWGG	2 cut(s)	36, 726
AjuI	GAANNNNNNNTTGG	4 cut(s)	1626, 1658, 1806, 1838
Alw21I	GWGCWC	3 cut(s)	150, 189, 1195
Alw26I	GTCTC	3 cut(s)	701, 1453, 1695
AlwI	GGATC	3 cut(s)	343, 1089, 1481
AlwNI	CAGNNNCTG	2 cut(s)	139, 1727
Ama87I	CYCGRG	1 cut(s)	941
Aor13HI	TCCGGA	2 cut(s)	1078, 1133
AoxI	GGCC	4 cut(s)	39, 55, 129, 590
ApeKI	GCWGC	3 cut(s)	286, 917, 1766
ApoI	RAATTY	6 cut(s)	1058, 1259, 1447, 1674, 1802, 1839
AseI	ATTAAT	1 cut(s)	1370
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	3 cut(s)	89, 1006, 1554
AspS9I	GGNCC	3 cut(s)	130, 590, 1544
AsuHPI	GGTGA	3 cut(s)	1006, 1801, 1873
AsuII	TTCGAA	1 cut(s)	1850
AsuNHI	GCTAGC	1 cut(s)	1732
AvaI	CYCGRG	1 cut(s)	941
AvaII	GGWCC	1 cut(s)	1544
BanI	GGYRCC	1 cut(s)	1551
BanII	GRGCYC	3 cut(s)	150, 189, 432
BarI	GAAGNNNNNNTAC	2 cut(s)	1790, 1822
BbrPI	CACGTG	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	27, 1158
Bbv12I	GWGCWC	3 cut(s)	150, 189, 1195
BbvCI	CCTCAGC	1 cut(s)	1761
BbvI	GCAGC	3 cut(s)	298, 904, 1753
BccI	CCATC	4 cut(s)	769, 868, 1391, 2042
BceAI	ACGGC	1 cut(s)	1757
BcgI	CGANNNNNNTGC	4 cut(s)	237, 271, 1064, 1098
BciT130I	CCWGG	2 cut(s)	38, 728
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	2 cut(s)	1099, 1981
BcoDI	GTCTC	3 cut(s)	701, 1453, 1695
BfaI	CTAG	3 cut(s)	597, 1577, 1733
BfoI	RGCGCY	1 cut(s)	1555
BfuAI	ACCTGC	2 cut(s)	666, 724
BfuI	GTATCC	1 cut(s)	502
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	4 cut(s)	42, 287, 918, 1767
BlsI	GCNGC	4 cut(s)	43, 288, 919, 1768
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	38, 728
Bme18I	GGWCC	1 cut(s)	1544
BmeT110I	CYCGRG	1 cut(s)	941
BmgT120I	GGNCC	3 cut(s)	130, 590, 1544
BmiI	GGNNCC	2 cut(s)	591, 1553
BmrFI	CCNGG	2 cut(s)	38, 728
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	8 cut(s)	91, 126, 493, 511, 567, 1084, 1890, 2020
BmtI	GCTAGC	1 cut(s)	1736
BmuI	ACTGGG	1 cut(s)	883
BpiI	GAAGAC	2 cut(s)	27, 1158
BpmI	CTGGAG	3 cut(s)	749, 1560, 1877
Bpu10I	CCTNAGC	3 cut(s)	369, 1728, 1761
Bpu14I	TTCGAA	1 cut(s)	1850
BpuEI	CTTGAG	3 cut(s)	104, 438, 907
BsaAI	YACGTR	3 cut(s)	404, 425, 638
BsaHI	GRCGYC	1 cut(s)	1552
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	1 cut(s)	1547
BsaWI	WCCGGW	2 cut(s)	1078, 1133
BsaXI	ACNNNNNCTCC	2 cut(s)	1555, 1585
Bsc4I	CCNNNNNNNGG	6 cut(s)	425, 482, 733, 895, 1025, 1255
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	2 cut(s)	889, 1276
Bse3DI	GCAATG	2 cut(s)	985, 1760
BseAI	TCCGGA	2 cut(s)	1078, 1133
BseBI	CCWGG	2 cut(s)	38, 728
BseDI	CCNNGG	1 cut(s)	1547
BseGI	GGATG	9 cut(s)	379, 508, 526, 582, 1046, 1075, 1402, 1905, 2053
BseLI	CCNNNNNNNGG	6 cut(s)	425, 482, 733, 895, 1025, 1255
BseMI	GCAATG	2 cut(s)	985, 1760
BseMII	CTCAG	8 cut(s)	121, 543, 682, 965, 1335, 1706, 1719, 1752
BseNI	ACTGG	2 cut(s)	889, 1276
BseRI	GAGGAG	2 cut(s)	254, 1454
BseXI	GCAGC	3 cut(s)	298, 904, 1753
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	87, 252
BshFI	GGCC	4 cut(s)	41, 57, 131, 592
BshNI	GGYRCC	1 cut(s)	1551
BsiHKAI	GWGCWC	3 cut(s)	150, 189, 1195
BsiHKCI	CYCGRG	1 cut(s)	941
BsiSI	CCGG	4 cut(s)	45, 54, 1079, 1134
BsiWI	CGTACG	1 cut(s)	1797
BslFI	GGGAC	4 cut(s)	125, 1414, 1553, 1900
BslI	CCNNNNNNNGG	6 cut(s)	425, 482, 733, 895, 1025, 1255
BsmAI	GTCTC	3 cut(s)	701, 1453, 1695
BsmFI	GGGAC	4 cut(s)	125, 1414, 1553, 1900
BsmI	GAATGC	2 cut(s)	73, 408
BsnI	GGCC	4 cut(s)	41, 57, 131, 592
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	941
Bsp119I	TTCGAA	1 cut(s)	1850
Bsp1286I	GDGCHC	4 cut(s)	150, 189, 432, 1195
Bsp13I	TCCGGA	2 cut(s)	1078, 1133
Bsp1407I	TGTACA	2 cut(s)	326, 699
BspACI	CCGC	6 cut(s)	42, 151, 252, 506, 574, 1522
BspANI	GGCC	4 cut(s)	41, 57, 131, 592
BspCNI	CTCAG	8 cut(s)	120, 544, 681, 966, 1336, 1705, 1720, 1753
BspEI	TCCGGA	2 cut(s)	1078, 1133
BspFNI	CGCG	2 cut(s)	87, 252
BspHI	TCATGA	1 cut(s)	1408
BspLI	GGNNCC	2 cut(s)	591, 1553
BspMI	ACCTGC	2 cut(s)	666, 724
BspOI	GCTAGC	1 cut(s)	1736
BspPI	GGATC	3 cut(s)	343, 1089, 1481
BspT104I	TTCGAA	1 cut(s)	1850
BspT107I	GGYRCC	1 cut(s)	1551
BspTNI	GGTCTC	1 cut(s)	701
BsrDI	GCAATG	2 cut(s)	985, 1760
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	2 cut(s)	326, 699
BsrI	ACTGG	2 cut(s)	889, 1276
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	1547
BssNI	GRCGYC	1 cut(s)	1552
BssT1I	CCWWGG	1 cut(s)	1547
Bst2UI	CCWGG	2 cut(s)	38, 728
Bst4CI	ACNGT	9 cut(s)	331, 514, 712, 765, 880, 1297, 1519, 1567, 1778
Bst6I	CTCTTC	4 cut(s)	21, 1410, 1419, 1488
BstACI	GRCGYC	1 cut(s)	1552
BstAUI	TGTACA	2 cut(s)	326, 699
BstBAI	YACGTR	3 cut(s)	404, 425, 638
BstBI	TTCGAA	1 cut(s)	1850
BstENI	CCTNNNNNAGG	1 cut(s)	731
BstF5I	GGATG	9 cut(s)	379, 508, 526, 582, 1046, 1075, 1402, 1905, 2053
BstFNI	CGCG	2 cut(s)	87, 252
BstH2I	RGCGCY	1 cut(s)	1555
BstHHI	GCGC	3 cut(s)	89, 1006, 1554
BstMAI	GTCTC	3 cut(s)	701, 1453, 1695
BstMWI	GCNNNNNNNGC	8 cut(s)	50, 145, 193, 286, 571, 1750, 1766, 2000
BstNI	CCWGG	2 cut(s)	38, 728
BstNSI	RCATGY	5 cut(s)	82, 293, 665, 1018, 1907
BstSCI	CCNGG	2 cut(s)	36, 726
BstUI	CGCG	2 cut(s)	87, 252
BstV1I	GCAGC	3 cut(s)	298, 904, 1753
BstV2I	GAAGAC	2 cut(s)	27, 1158
BstX2I	RGATCY	3 cut(s)	335, 385, 1486
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	3 cut(s)	335, 385, 1486
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	41, 57, 131, 592
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	9 cut(s)	379, 508, 526, 582, 1046, 1075, 1402, 1905, 2053
BtsIMutI	CAGTG	3 cut(s)	549, 885, 1991
BveI	ACCTGC	2 cut(s)	666, 724
CaiI	CAGNNNCTG	2 cut(s)	139, 1727
CciI	TCATGA	1 cut(s)	1408
CfoI	GCGC	3 cut(s)	89, 1006, 1554
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	3 cut(s)	130, 590, 1544
CseI	GACGC	3 cut(s)	122, 258, 1644
DinI	GGCGCC	1 cut(s)	1553
DraI	TTTAAA	1 cut(s)	1971
EaeI	YGGCCR	1 cut(s)	39
Eam1104I	CTCTTC	4 cut(s)	21, 1410, 1419, 1488
EarI	CTCTTC	4 cut(s)	21, 1410, 1419, 1488
Ecl136II	GAGCTC	2 cut(s)	148, 187
Eco130I	CCWWGG	1 cut(s)	1547
Eco24I	GRGCYC	3 cut(s)	150, 189, 432
Eco31I	GGTCTC	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	1 cut(s)	1544
Eco53kI	GAGCTC	2 cut(s)	148, 187
Eco57I	CTGAAG	1 cut(s)	839
Eco72I	CACGTG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	941
EcoICRI	GAGCTC	2 cut(s)	148, 187
EcoNI	CCTNNNNNAGG	1 cut(s)	731
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRI	GAATTC	3 cut(s)	1259, 1447, 1802
EcoRII	CCWGG	2 cut(s)	36, 726
EcoRV	GATATC	1 cut(s)	871
EcoT14I	CCWWGG	1 cut(s)	1547
EcoT22I	ATGCAT	2 cut(s)	84, 1905
EcoT38I	GRGCYC	3 cut(s)	150, 189, 432
EgeI	GGCGCC	1 cut(s)	1553
EheI	GGCGCC	1 cut(s)	1553
ErhI	CCWWGG	1 cut(s)	1547
FaqI	GGGAC	4 cut(s)	125, 1414, 1553, 1900
FbaI	TGATCA	2 cut(s)	1099, 1981
Fnu4HI	GCNGC	4 cut(s)	42, 287, 918, 1767
FokI	GGATG	8 cut(s)	386, 515, 533, 589, 1033, 1062, 1409, 1912
FriOI	GRGCYC	3 cut(s)	150, 189, 432
Fsp4HI	GCNGC	4 cut(s)	42, 287, 918, 1767
FspBI	CTAG	3 cut(s)	597, 1577, 1733
GlaI	GCGC	3 cut(s)	88, 1005, 1553
GluI	GCNGC	4 cut(s)	42, 287, 918, 1767
GsuI	CTGGAG	3 cut(s)	749, 1560, 1877
HaeII	RGCGCY	1 cut(s)	1555
HaeIII	GGCC	4 cut(s)	41, 57, 131, 592
HapII	CCGG	4 cut(s)	45, 54, 1079, 1134
HgaI	GACGC	3 cut(s)	122, 258, 1644
HhaI	GCGC	3 cut(s)	89, 1006, 1554
Hin1I	GRCGYC	1 cut(s)	1552
Hin6I	GCGC	3 cut(s)	87, 1004, 1552
HinP1I	GCGC	3 cut(s)	87, 1004, 1552
HincII	GTYRAC	3 cut(s)	1012, 1659, 2026
HindII	GTYRAC	3 cut(s)	1012, 1659, 2026
HindIII	AAGCTT	5 cut(s)	161, 563, 960, 1232, 1964
HinfI	GANTC	7 cut(s)	48, 95, 415, 723, 1402, 1847, 1888
HpaII	CCGG	4 cut(s)	45, 54, 1079, 1134
HphI	GGTGA	3 cut(s)	1006, 1801, 1873
Hpy166II	GTNNAC	5 cut(s)	327, 343, 1012, 1659, 2026
Hpy188I	TCNGA	7 cut(s)	10, 145, 414, 490, 675, 1695, 1846
Hpy8I	GTNNAC	5 cut(s)	327, 343, 1012, 1659, 2026
Hpy99I	CGWCG	2 cut(s)	14, 252
HpyAV	CCTTC	6 cut(s)	82, 491, 674, 1061, 1342, 2038
HpyCH4III	ACNGT	9 cut(s)	331, 514, 712, 765, 880, 1297, 1519, 1567, 1778
HpyCH4IV	ACGT	4 cut(s)	403, 424, 637, 1008
HpyF10VI	GCNNNNNNNGC	8 cut(s)	50, 145, 193, 286, 571, 1750, 1766, 2000
HpySE526I	ACGT	4 cut(s)	403, 424, 637, 1008
Hsp92I	GRCGYC	1 cut(s)	1552
HspAI	GCGC	3 cut(s)	87, 1004, 1552
KasI	GGCGCC	1 cut(s)	1551
Kpn2I	TCCGGA	2 cut(s)	1078, 1133
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	2 cut(s)	1099, 1981
LmnI	GCTCC	8 cut(s)	145, 153, 367, 627, 730, 1198, 1441, 1729
Lsp1109I	GCAGC	3 cut(s)	298, 904, 1753
LweI	GCATC	8 cut(s)	91, 126, 493, 511, 567, 1084, 1890, 2020
MaeI	CTAG	3 cut(s)	597, 1577, 1733
MaeII	ACGT	4 cut(s)	403, 424, 637, 1008
MaeIII	GTNAC	6 cut(s)	296, 399, 443, 1033, 1219, 1861
MfeI	CAATTG	2 cut(s)	742, 1607
MflI	RGATCY	3 cut(s)	335, 385, 1486
MhlI	GDGCHC	4 cut(s)	150, 189, 432, 1195
Mly113I	GGCGCC	1 cut(s)	1552
MlyI	GAGTC	4 cut(s)	89, 732, 1396, 1882
MmeI	TCCRAC	6 cut(s)	33, 85, 123, 123, 468, 933
Mph1103I	ATGCAT	2 cut(s)	84, 1905
MroI	TCCGGA	2 cut(s)	1078, 1133
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	71
MslI	CAYNNNNRTG	2 cut(s)	554, 932
MspI	CCGG	4 cut(s)	45, 54, 1079, 1134
MspR9I	CCNGG	2 cut(s)	38, 728
MunI	CAATTG	2 cut(s)	742, 1607
Mva1269I	GAATGC	2 cut(s)	73, 408
MvaI	CCWGG	2 cut(s)	38, 728
MvnI	CGCG	2 cut(s)	87, 252
MwoI	GCNNNNNNNGC	8 cut(s)	50, 145, 193, 286, 571, 1750, 1766, 2000
NaeI	GCCGGC	1 cut(s)	55
NarI	GGCGCC	1 cut(s)	1552
NgoMIV	GCCGGC	1 cut(s)	53
NheI	GCTAGC	1 cut(s)	1732
NlaIV	GGNNCC	2 cut(s)	591, 1553
NmeAIII	GCCGAG	2 cut(s)	107, 2015
NmuCI	GTSAC	3 cut(s)	399, 1219, 1861
NsiI	ATGCAT	2 cut(s)	84, 1905
NspI	RCATGY	5 cut(s)	82, 293, 665, 1018, 1907
NspV	TTCGAA	1 cut(s)	1850
PaeI	GCATGC	1 cut(s)	293
PagI	TCATGA	1 cut(s)	1408
PctI	GAATGC	2 cut(s)	73, 408
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	48, 415, 1847
Pfl23II	CGTACG	1 cut(s)	1797
PflMI	CCANNNNNTGG	1 cut(s)	895
PfoI	TCCNGGA	1 cut(s)	726
PkrI	GCNGC	4 cut(s)	43, 288, 919, 1768
PleI	GAGTC	4 cut(s)	89, 731, 1396, 1882
PluTI	GGCGCC	1 cut(s)	1555
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
PpsI	GAGTC	4 cut(s)	89, 731, 1396, 1882
Ppu21I	YACGTR	3 cut(s)	404, 425, 638
PshBI	ATTAAT	1 cut(s)	1370
PsiI	TTATAA	1 cut(s)	1301
Psp124BI	GAGCTC	2 cut(s)	150, 189
Psp6I	CCWGG	2 cut(s)	36, 726
PspCI	CACGTG	1 cut(s)	404
PspGI	CCWGG	2 cut(s)	36, 726
PspLI	CGTACG	1 cut(s)	1797
PspN4I	GGNNCC	2 cut(s)	591, 1553
PspPI	GGNCC	3 cut(s)	130, 590, 1544
PstNI	CAGNNNCTG	2 cut(s)	139, 1727
PsuI	RGATCY	3 cut(s)	335, 385, 1486
RseI	CAYNNNNRTG	2 cut(s)	554, 932
SacI	GAGCTC	2 cut(s)	150, 189
SatI	GCNGC	4 cut(s)	42, 287, 918, 1767
Sau96I	GGNCC	3 cut(s)	130, 590, 1544
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	4 cut(s)	89, 732, 1396, 1882
ScrFI	CCNGG	2 cut(s)	38, 728
SduI	GDGCHC	4 cut(s)	150, 189, 432, 1195
SfaNI	GCATC	8 cut(s)	91, 126, 493, 511, 567, 1084, 1890, 2020
SfoI	GGCGCC	1 cut(s)	1553
SfuI	TTCGAA	1 cut(s)	1850
SinI	GGWCC	1 cut(s)	1544
SmiMI	CAYNNNNRTG	2 cut(s)	554, 932
SmlI	CTYRAG	3 cut(s)	119, 453, 922
SmoI	CTYRAG	3 cut(s)	119, 453, 922
SphI	GCATGC	1 cut(s)	293
SsiI	CCGC	6 cut(s)	42, 151, 252, 506, 574, 1522
SspDI	GGCGCC	1 cut(s)	1551
SspMI	CTAG	3 cut(s)	597, 1577, 1733
SstI	GAGCTC	2 cut(s)	150, 189
StyD4I	CCNGG	2 cut(s)	36, 726
StyI	CCWWGG	1 cut(s)	1547
TaaI	ACNGT	9 cut(s)	331, 514, 712, 765, 880, 1297, 1519, 1567, 1778
TaiI	ACGT	4 cut(s)	406, 427, 640, 1011
TaqI	TCGA	5 cut(s)	247, 1084, 1353, 1386, 1850
TatI	WGTACW	5 cut(s)	123, 326, 699, 1041, 1746
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	48, 415, 1847
TscAI	CASTG	3 cut(s)	556, 885, 1991
TseFI	GTSAC	3 cut(s)	399, 1219, 1861
TseI	GCWGC	3 cut(s)	286, 917, 1766
Tsp45I	GTSAC	3 cut(s)	399, 1219, 1861
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	3 cut(s)	556, 885, 1991
Van91I	CCANNNNNTGG	1 cut(s)	895
VpaK11BI	GGWCC	1 cut(s)	1544
VspI	ATTAAT	1 cut(s)	1370
XagI	CCTNNNNNAGG	1 cut(s)	731
XapI	RAATTY	6 cut(s)	1058, 1259, 1447, 1674, 1802, 1839
XceI	RCATGY	5 cut(s)	82, 293, 665, 1018, 1907
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	3 cut(s)	597, 1577, 1733
ZrmI	AGTACT	1 cut(s)	125
Zsp2I	ATGCAT	2 cut(s)	84, 1905

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.