Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011815

Physical Location & Seq

Genomic Coordinates Forward (+)

5978470 .. 5979731

Gene Structure 1262 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0075400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGACCGACCCAGATTCGTAATCGAAGCCTCGAAGGCGGAGTCAACGGCCAAGCAGAACGGCCTCACCGTCGTCCAGCTCCTCCCGTCCTTCGTCGAGTCCGCCAAGGCCCTCGCCCGGGTCCCCATTTCCAAATTCCCCGTCGGAGCCGTCGGGTACGGGTCCTCGGGTCGGGTCTTCTACGGGGTCAACCTCGAGTTCCCGGGCCTCCCCCTCCACTACTCCGTCCACGCCGAGCAGTTCCTCGTCACCAATCTCTCGATCCAGTCGGAGCCCCGCCTCGAATACGTCGCCGTCTCCGCCGCCCCCTGCGGCCATTGCCGACAATTCTTTCAGGAAATCCGCCGCGCCCAGGACATCAAGATCCTCATCACCTCCGCCGAGGCCGGAGACGACACGTCGTGCGGCCAATTCAGCCCCCTCCGCCACCTCCTCCCCCACCGGTTCGGCCCCGAAGACCTCCTCGACGAGGACGTGCCTTTAGTCCTCGAGAAGCACAACAATGGCCTATCTTTTAGCAGCAACAAATCGCCAACTTTTAGCGACGATTTGATGAACCACGCGCTCGAGGCGGCGAATAGGTCCCACGCGCCGTACAGCCTGTGCCCGTCTGGGGTGGCGATTCTGGACGGTAAGGGGAAGATTTACAAAGGGTGGTATGTGGAATCGGCGGCGTATAATCCGAGCATGGGTCCGGTCCAGGCGGCTCTGGTGGATTACATTGTCGGCGGCGGCGGCGGGTATGAGGAAATAGTGGCGGCGGTTCTGGTGGAAAAGGAGGGTGCTTTGGTGAAGCAGGAGCAGGCTGCTAGGTTGCTGTTGCAGACCATTTCTCCTAAGGTCGAATTTCGGGTTTTGCATTGCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps35

Protein Analysis

289

Amino Acids

31.4

Weight (kDa)

6.15

Isoelectric Point (pI)

47.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
dCMP_cyt_deam_1	PF00383	35 - 115	3.2e-12	Cytidine and deoxycytidylate deaminase zinc-binding region
dCMP_cyt_deam_2	PF08211	141 - 271	1.5e-48	Cytidine and deoxycytidylate deaminase zinc-binding region

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17790 AT3G51310
fragaria_vesca	FvH4_1g11410
malus_domestica	MD02G1126400.v1.1 MD15G1242400.v1.1
prunus_persica	Prupe.7G171800_v2.0.a1 Prupe.7G171800_v2.0.a1
pyrus_communis	pycom02g09870 pycom15g21360
rosa_chinensis	RchiOBHm_Chr2g0098981
rosa_laevigata	RLG00000016838
rosa_multiflora	Rmu_sc0000577.1_g000009
rosa_roxburghii	Rroxscaffold_2G00143530
rosa_rugosa	Rorug02G0075400
rosa_samantha	Rh2AG124900 Rh2BG128100 Rh2CG129000 Rh2DG129200
rosa_wichuraiana	Rw2G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	348, 563, 590
AclWI	GGATC	2 cut(s)	256, 358
AcoI	YGGCCR	3 cut(s)	48, 313, 406
AcsI	RAATTY	2 cut(s)	134, 845
AdeI	CACNNNGTG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	158, 596
AfiI	CCNNNNNNNGG	7 cut(s)	117, 118, 171, 352, 469, 613, 689
AflIII	ACRYGT	1 cut(s)	396
AgeI	ACCGGT	1 cut(s)	441
AhdI	GACNNNNNGTC	1 cut(s)	397
AjiI	CACGTC	2 cut(s)	399, 475
AjnI	CCWGG	2 cut(s)	351, 699
AluBI	AGCT	1 cut(s)	79
AluI	AGCT	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	301, 384
AlwI	GGATC	2 cut(s)	256, 358
Ama87I	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 566
AoxI	GGCC	9 cut(s)	48, 61, 108, 205, 313, 384, 406, 448, 505
ApeKI	GCWGC	2 cut(s)	519, 806
ApoI	RAATTY	2 cut(s)	134, 845
ArsI	GACNNNNNNTTYG	4 cut(s)	26, 58, 126, 158
AsiGI	ACCGGT	1 cut(s)	441
AspLEI	GCGC	3 cut(s)	350, 565, 592
AspS9I	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 449, 582, 692, 697
AsuC2I	CCSGG	4 cut(s)	118, 119, 203, 204
AsuHPI	GGTGA	4 cut(s)	58, 241, 364, 802
AvaI	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 566
AvaII	GGWCC	6 cut(s)	4, 121, 162, 582, 692, 697
AxyI	CCTNAGG	1 cut(s)	837
BaeGI	GKGCMC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	276
BbsI	GAAGAC	2 cut(s)	169, 462
BbvI	GCAGC	2 cut(s)	531, 793
BceAI	ACGGC	5 cut(s)	63, 76, 134, 278, 577
BciT130I	CCWGG	2 cut(s)	353, 701
BcnI	CCSGG	4 cut(s)	118, 119, 203, 204
BcoDI	GTCTC	2 cut(s)	301, 384
BfaI	CTAG	1 cut(s)	810
BglI	GCCNNNNNGGC	1 cut(s)	35
Bme1390I	CCNGG	6 cut(s)	118, 119, 203, 204, 353, 701
Bme18I	GGWCC	6 cut(s)	4, 121, 162, 582, 692, 697
BmeRI	GACNNNNNGTC	1 cut(s)	397
BmeT110I	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 566
BmgBI	CACGTC	2 cut(s)	399, 475
BmgT120I	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 449, 582, 692, 697
BmiI	GGNNCC	8 cut(s)	122, 123, 148, 163, 273, 451, 584, 693
BmrFI	CCNGG	6 cut(s)	118, 119, 203, 204, 353, 701
BpiI	GAAGAC	2 cut(s)	169, 462
BpuMI	CCSGG	4 cut(s)	118, 119, 203, 204
BsaBI	GATNNNNATC	1 cut(s)	368
BsaJI	CCNNGG	6 cut(s)	105, 117, 165, 202, 351, 381
BsaWI	WCCGGW	2 cut(s)	441, 694
BsaXI	ACNNNNNCTCC	2 cut(s)	817, 847
Bsc4I	CCNNNNNNNGG	7 cut(s)	117, 118, 171, 352, 469, 613, 689
Bse118I	RCCGGY	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	265
Bse21I	CCTNAGG	1 cut(s)	837
Bse3DI	GCAATG	2 cut(s)	316, 859
Bse8I	GATNNNNATC	1 cut(s)	368
BseBI	CCWGG	2 cut(s)	353, 701
BseDI	CCNNGG	6 cut(s)	105, 117, 165, 202, 351, 381
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	7 cut(s)	117, 118, 171, 352, 469, 613, 689
BseMI	GCAATG	2 cut(s)	316, 859
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	3 cut(s)	71, 422, 452
BseSI	GKGCMC	1 cut(s)	608
BseXI	GCAGC	2 cut(s)	531, 793
Bsh1236I	CGCG	3 cut(s)	348, 563, 590
BshFI	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 408, 450, 507
BshTI	ACCGGT	1 cut(s)	441
BsiHKCI	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 566
BsiSI	CCGG	5 cut(s)	118, 203, 387, 442, 695
BslFI	GGGAC	2 cut(s)	107, 568
BslI	CCNNNNNNNGG	7 cut(s)	117, 118, 171, 352, 469, 613, 689
BsmAI	GTCTC	2 cut(s)	301, 384
BsmBI	CGTCTC	2 cut(s)	301, 384
BsmFI	GGGAC	2 cut(s)	107, 568
BsnI	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 408, 450, 507
BsoBI	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 566
Bsp1286I	GDGCHC	2 cut(s)	276, 608
Bsp143I	GATC	2 cut(s)	261, 363
BspANI	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 408, 450, 507
BspFNI	CGCG	3 cut(s)	348, 563, 590
BspLI	GGNNCC	8 cut(s)	122, 123, 148, 163, 273, 451, 584, 693
BspPI	GGATC	2 cut(s)	256, 358
BsrDI	GCAATG	2 cut(s)	316, 859
BsrFI	RCCGGY	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	441
BssECI	CCNNGG	6 cut(s)	105, 117, 165, 202, 351, 381
BssMI	GATC	2 cut(s)	261, 363
BssT1I	CCWWGG	1 cut(s)	105
Bst2UI	CCWGG	2 cut(s)	353, 701
Bst4CI	ACNGT	2 cut(s)	70, 632
BstC8I	GCNNGC	1 cut(s)	804
BstDEI	CTNAG	1 cut(s)	837
BstENI	CCTNNNNNAGG	1 cut(s)	467
BstFNI	CGCG	3 cut(s)	348, 563, 590
BstHHI	GCGC	3 cut(s)	350, 565, 592
BstKTI	GATC	2 cut(s)	264, 366
BstMAI	GTCTC	2 cut(s)	301, 384
BstMBI	GATC	2 cut(s)	261, 363
BstMWI	GCNNNNNNNGC	7 cut(s)	35, 299, 318, 414, 423, 569, 735
BstNI	CCWGG	2 cut(s)	353, 701
BstSCI	CCNGG	6 cut(s)	116, 117, 201, 202, 351, 699
BstSLI	GKGCMC	1 cut(s)	608
BstUI	CGCG	3 cut(s)	348, 563, 590
BstV1I	GCAGC	2 cut(s)	531, 793
BstV2I	GAAGAC	2 cut(s)	169, 462
BstX2I	RGATCY	1 cut(s)	363
BstYI	RGATCY	1 cut(s)	363
Bsu36I	CCTNAGG	1 cut(s)	837
BsuRI	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 408, 450, 507
BtrI	CACGTC	2 cut(s)	399, 475
Cac8I	GCNNGC	1 cut(s)	804
CfoI	GCGC	3 cut(s)	350, 565, 592
Cfr10I	RCCGGY	1 cut(s)	441
Cfr13I	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 449, 582, 692, 697
Cfr9I	CCCGGG	2 cut(s)	117, 202
Csp6I	GTAC	2 cut(s)	157, 595
CspAI	ACCGGT	1 cut(s)	441
CviAII	CATG	1 cut(s)	688
CviQI	GTAC	2 cut(s)	157, 595
DdeI	CTNAG	1 cut(s)	837
DpnI	GATC	2 cut(s)	263, 365
DpnII	GATC	2 cut(s)	261, 363
DraIII	CACNNNGTG	1 cut(s)	402
DriI	GACNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	3 cut(s)	48, 313, 406
Eam1105I	GACNNNNNGTC	1 cut(s)	397
EciI	GGCGGA	6 cut(s)	53, 91, 289, 332, 367, 413
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	276
Eco47I	GGWCC	6 cut(s)	4, 121, 162, 582, 692, 697
Eco81I	CCTNAGG	1 cut(s)	837
Eco88I	CYCGRG	6 cut(s)	117, 166, 194, 202, 488, 566
EcoNI	CCTNNNNNAGG	1 cut(s)	467
EcoO109I	RGGNCCY	4 cut(s)	109, 121, 162, 582
EcoRII	CCWGG	2 cut(s)	351, 699
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	105
Esp3I	CGTCTC	2 cut(s)	301, 384
FaeI	CATG	1 cut(s)	691
FaiI	YATR	4 cut(s)	660, 678, 689, 744
FaqI	GGGAC	2 cut(s)	107, 568
FatI	CATG	1 cut(s)	687
FauI	CCCGC	2 cut(s)	284, 731
FriOI	GRGCYC	1 cut(s)	276
FspBI	CTAG	1 cut(s)	810
GlaI	GCGC	3 cut(s)	349, 564, 591
HaeIII	GGCC	9 cut(s)	50, 63, 110, 207, 315, 386, 408, 450, 507
HapII	CCGG	5 cut(s)	118, 203, 387, 442, 695
HhaI	GCGC	3 cut(s)	350, 565, 592
Hin1II	CATG	1 cut(s)	691
Hin6I	GCGC	3 cut(s)	348, 563, 590
HinP1I	GCGC	3 cut(s)	348, 563, 590
HincII	GTYRAC	2 cut(s)	45, 190
HindII	GTYRAC	2 cut(s)	45, 190
HinfI	GANTC	5 cut(s)	15, 41, 98, 622, 665
HpaII	CCGG	5 cut(s)	118, 203, 387, 442, 695
HphI	GGTGA	4 cut(s)	58, 241, 364, 802
Hpy166II	GTNNAC	3 cut(s)	45, 190, 229
Hpy188I	TCNGA	3 cut(s)	146, 271, 684
Hpy188III	TCNNGA	5 cut(s)	259, 335, 361, 490, 626
Hpy8I	GTNNAC	3 cut(s)	45, 190, 229
Hpy99I	CGWCG	8 cut(s)	74, 98, 146, 155, 293, 403, 470, 548
HpyAV	CCTTC	2 cut(s)	28, 100
HpyCH4III	ACNGT	2 cut(s)	70, 632
HpyCH4IV	ACGT	3 cut(s)	288, 398, 474
HpyCH4V	TGCA	3 cut(s)	823, 859, 864
HpyF10VI	GCNNNNNNNGC	7 cut(s)	35, 299, 318, 414, 423, 569, 735
HpyF3I	CTNAG	1 cut(s)	837
HpySE526I	ACGT	3 cut(s)	288, 398, 474
Hsp92II	CATG	1 cut(s)	691
HspAI	GCGC	3 cut(s)	348, 563, 590
KflI	GGGWCCC	1 cut(s)	121
Kzo9I	GATC	2 cut(s)	261, 363
LmnI	GCTCC	4 cut(s)	84, 146, 271, 799
Lsp1109I	GCAGC	2 cut(s)	531, 793
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	3 cut(s)	288, 398, 474
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	2 cut(s)	263, 365
MboI	GATC	2 cut(s)	261, 363
MboII	GAAGA	3 cut(s)	169, 467, 652
MflI	RGATCY	1 cut(s)	363
MhlI	GDGCHC	2 cut(s)	276, 608
MluCI	AATT	4 cut(s)	134, 326, 410, 845
MlyI	GAGTC	2 cut(s)	50, 107
MmeI	TCCRAC	2 cut(s)	124, 249
MslI	CAYNNNNRTG	1 cut(s)	501
MspI	CCGG	5 cut(s)	118, 203, 387, 442, 695
MspR9I	CCNGG	6 cut(s)	118, 119, 203, 204, 353, 701
MvaI	CCWGG	2 cut(s)	353, 701
MvnI	CGCG	3 cut(s)	348, 563, 590
MwoI	GCNNNNNNNGC	7 cut(s)	35, 299, 318, 414, 423, 569, 735
NciI	CCSGG	4 cut(s)	118, 119, 203, 204
NdeII	GATC	2 cut(s)	261, 363
NlaIII	CATG	1 cut(s)	691
NlaIV	GGNNCC	8 cut(s)	122, 123, 148, 163, 273, 451, 584, 693
NmeAIII	GCCGAG	2 cut(s)	259, 406
NmuCI	GTSAC	1 cut(s)	247
PaeR7I	CTCGAG	3 cut(s)	194, 488, 566
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 471
PfeI	GAWTC	3 cut(s)	15, 622, 665
PinAI	ACCGGT	1 cut(s)	441
PleI	GAGTC	2 cut(s)	49, 106
PpsI	GAGTC	2 cut(s)	49, 106
PpuMI	RGGWCCY	3 cut(s)	121, 162, 582
Psp5II	RGGWCCY	3 cut(s)	121, 162, 582
Psp6I	CCWGG	2 cut(s)	351, 699
PspGI	CCWGG	2 cut(s)	351, 699
PspN4I	GGNNCC	8 cut(s)	122, 123, 148, 163, 273, 451, 584, 693
PspPI	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 449, 582, 692, 697
PspPPI	RGGWCCY	3 cut(s)	121, 162, 582
PspXI	VCTCGAGB	2 cut(s)	194, 566
PsuI	RGATCY	1 cut(s)	363
RsaI	GTAC	2 cut(s)	158, 596
RsaNI	GTAC	2 cut(s)	157, 595
RseI	CAYNNNNRTG	1 cut(s)	501
Sau3AI	GATC	2 cut(s)	261, 363
Sau96I	GGNCC	9 cut(s)	4, 109, 121, 162, 205, 449, 582, 692, 697
SchI	GAGTC	2 cut(s)	50, 107
ScrFI	CCNGG	6 cut(s)	118, 119, 203, 204, 353, 701
SduI	GDGCHC	2 cut(s)	276, 608
Sfr274I	CTCGAG	3 cut(s)	194, 488, 566
SinI	GGWCC	6 cut(s)	4, 121, 162, 582, 692, 697
SlaI	CTCGAG	3 cut(s)	194, 488, 566
SmaI	CCCGGG	2 cut(s)	119, 204
SmiMI	CAYNNNNRTG	1 cut(s)	501
SmlI	CTYRAG	3 cut(s)	194, 488, 566
SmoI	CTYRAG	3 cut(s)	194, 488, 566
Sse9I	AATT	4 cut(s)	134, 326, 410, 845
SspMI	CTAG	1 cut(s)	810
StyD4I	CCNGG	6 cut(s)	116, 117, 201, 202, 351, 699
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	70, 632
TaiI	ACGT	3 cut(s)	291, 401, 477
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	4 cut(s)	134, 326, 410, 845
TfiI	GAWTC	3 cut(s)	15, 622, 665
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	2 cut(s)	519, 806
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	569
TspGWI	ACGGA	1 cut(s)	214
TspMI	CCCGGG	2 cut(s)	117, 202
VpaK11BI	GGWCC	6 cut(s)	4, 121, 162, 582, 692, 697
XagI	CCTNNNNNAGG	1 cut(s)	467
XapI	RAATTY	2 cut(s)	134, 845
XhoI	CTCGAG	3 cut(s)	194, 488, 566
XmaI	CCCGGG	2 cut(s)	117, 202
XspI	CTAG	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.