Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011815

Physical Location & Seq

Genomic Coordinates Forward (+)

11306852 .. 11314667

Gene Structure 7816 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ47372

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2382 bp

ATGATCTCCGACGGAGTTGAAGACGAAGAGAAGTACCTGGCCGCCGGAATCGCCGGCCTCCAACAGAATGCCTTCTACATGCATCGCGCTCTGGACTCCAACAATCTCAGGGACGCTCTCAAGTACTCGGCTCAGATGCTGTCGGAGCTCCGCACCTCCAAGCTTTCGCCTCACAAATACTACGAGCTTTATATGCGTGCGTTTGATGAATTGAGGAAATTGGAGATGTTCTTCAAGGAGGAGGCTCGGCGCGGTTGCTCTATTATTGATCTGTATGAGCTTGTGCAGCATGCTGGCAACATATTGCCCAGATTATATCTTCTGTGTACAGTAGGATCTGTTTACATCAAATCTAAGGAAGCTCCTGCTAAGGATGTCCTGAAAGATCTTGTGGAAATGTCACGTGGCATTCAGAATCCTGTACGTGGGCTCTTTTTAAGGAGTTACCTTTCTCAAGTCAGTAGGGATAAGTTGCCTGATATTGGGTCGGAGTATGAAGGGGATGCGGATACTGTCAGGGATGCTGTTGAGTTTGTTCTCCAAAACTTCACTGAGATGAACAAGCTTTGGGTGCGGATGCAACATCAGGGGCCTGCTAGGGAAAAGGAGAAACGGGAGAAAGAAAGGAGCGAGCTACGTGATCTTGTTGGTAAAAACCTGCATGTTCTCAGTCAGATAGAAGGTGTTGATCTGGATTTGTACAAAGAGACCGTGCTTCCCAGAGTCCTGGAGCAGGTTGTCAATTGTAAAGATGAGCTGGCACAGTTTTATTTGATGGATTGCATTATTCAAGTCTTTCCTGATGAGTACCACTTGCAAACTCTTGATATATTGTTGGGTGCTTGCCCCCAACTTCAGCCATCTGTTGATATCAAGACAGTGCTATCCCAGTTAATGGAAAGGCTTTCCAACTATGCTGCCTCAAGCATAGAAGTGTTGCCCGAGTTCTTACAAGTAGAAGCTTTTTCTAAACTGAGCAATGCGATTGGAAAGGTGATTGAAGCGCACGTTGACATGCCTGTAATTGGTGTTGTTACTTTGTACTCATCCCTTCTTAAATTTACTCTCCATGTGCATCCGGATCGACTTGATTATGCTGATCAAGTGTTGGGGTCATTTGTTAAGAAGCTCTCCGGAAAAGGAAAAATTGAAGACAGCAGGGCAACAAAACAAGTTGTTGCACTTTTAAGTGCTCCATTGGAGAAATATAATGATATTGTGACTGCTTTGAAGCTTACAAATTATCCCCGTGTCATGGAATTCCTTGATACTGGAACAAATAAAGTCATGGCAACTGTTATAATACAAAGCATTATGAAAAATACAACTCATATATTAACTGCTGAGAAGGTCGAGGCATTGTTTGAATTAATAAAAGGACTTATCGAGGATTTGGATGGGACTCTTCATGATGAGGTTGATGAAGATGATTTCAAGGAGGAGCAGAATTCTGTTGCGAGACTTATTCAAATGTTCCACAATGAAGATCCAGAAGAGATGTTTAAGATCATAGGTACTGTGCGGAAGCACATCATGTCTGGAGGACCAAAGCGCCTACCCTTTACTGTCCCTCCCCTAGTCTTTAATTCTCTAAAGTTGGTCAGACAATTGCAAGGAGGACATGAAGATAAAGAAAATCCTTTTGGAGAAGAAGCGTCAACTACACCAAAGAAAATTTTTCAGCTCTTGTCTCAGACTATTGAGGCTCTGTTGAATGTGCCAGCTCCTGAGCTAGCTTTACGGCTGTACTTGCAATGTGCTGAGGCTGCAAATGACTGTGATTTAGAACCTGTTGCGTACGAATTCTTCACCCAAGCATATATTCTCTATGAAGAAGAAATTTCAGATTCGAAAGCACAGGTGACTGCAATTCATTTGATAATTGGGACTCTCCAGAGGATGCATGTATTTGGTGTTGAGAACAGAGATACTTTAACTCACAAAGCCACAGGGTATTCGGCAAAGCTTTTAAAGAAGCCTGATCAGTGCCGAGCTGTCTATGCTTGCTCGCATCTTTTCTGGGTTGATGATCAGGAGAACATGAAGGATGGGGAAAGGGTACTGATTTGCCTAAAGAGAGCTTTAAGGATTGCAAACGCTGCCCAGCAGATGGCCAACGCAACCCGTGGTAGCACTGGTTCAGCGACACTCTTCGTTGAAATACTGAACAAGTACCTTTATTTCTTTGAGAAGGGCAACCCACAGATAACTGTTGCTTCTGTACAAAGCCTGATTGAATTGATTACTACTGAAATGCAAAGTGACTCAACCCCAGCAGAGTCGGCTACAAATGCATTCTTTGCCAGCACGATGCGGTACATTCAATTCCAGAAGCAGAAAGGTGGCGCAGTTGGTGAAAAATATGAGCAAATCAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0010008 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0016482 GO:0030904 GO:0031090 GO:0031410 GO:0031982 GO:0032991 GO:0033036 GO:0034613 GO:0042147 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0097708 GO:0098588 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

Vps35

Protein Analysis

793

Amino Acids

89.76

Weight (kDa)

5.44

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps35	PF03635	13 - 750	7.3e-290	Vacuolar protein sorting-associated protein 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0011815)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G17790 AT3G51310
fragaria_vesca	FvH4_1g11410
malus_domestica	MD02G1126400.v1.1 MD15G1242400.v1.1
prunus_persica	Prupe.7G171800_v2.0.a1 Prupe.7G171800_v2.0.a1
pyrus_communis	pycom02g09870 pycom15g21360
rosa_chinensis	RchiOBHm_Chr2g0098981
rosa_laevigata	RLG00000016838
rosa_multiflora	Rmu_sc0000577.1_g000009
rosa_roxburghii	Rroxscaffold_2G00143530
rosa_rugosa	Rorug02G0075400
rosa_samantha	Rh2AG124900 Rh2BG128100 Rh2CG129000 Rh2DG129200
rosa_wichuraiana	Rw2G009590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1301
Acc36I	ACCTGC	2 cut(s)	666, 724
AccB7I	CCANNNNNTGG	2 cut(s)	895, 2110
AccII	CGCG	2 cut(s)	87, 252
AccIII	TCCGGA	2 cut(s)	1078, 1133
AciI	CCGC	7 cut(s)	42, 151, 252, 506, 574, 1522, 2314
AclWI	GGATC	3 cut(s)	343, 1089, 1481
AcoI	YGGCCR	2 cut(s)	39, 2112
AcsI	RAATTY	6 cut(s)	1058, 1259, 1447, 1674, 1802, 1839
AcuI	CTGAAG	1 cut(s)	839
AcvI	CACGTG	1 cut(s)	404
AfiI	CCNNNNNNNGG	7 cut(s)	425, 482, 733, 895, 1025, 1255, 2110
AjnI	CCWGG	2 cut(s)	36, 726
AjuI	GAANNNNNNNTTGG	4 cut(s)	1626, 1658, 1806, 1838
Alw21I	GWGCWC	2 cut(s)	150, 1195
Alw26I	GTCTC	3 cut(s)	701, 1453, 1695
AlwI	GGATC	3 cut(s)	343, 1089, 1481
AlwNI	CAGNNNCTG	2 cut(s)	139, 1727
Ama87I	CYCGRG	1 cut(s)	941
Aor13HI	TCCGGA	2 cut(s)	1078, 1133
AoxI	GGCC	4 cut(s)	39, 55, 590, 2112
ApeKI	GCWGC	4 cut(s)	286, 917, 1766, 2099
ApoI	RAATTY	6 cut(s)	1058, 1259, 1447, 1674, 1802, 1839
AseI	ATTAAT	1 cut(s)	1370
Asp700I	GAANNNNTTC	1 cut(s)	71
AspLEI	GCGC	5 cut(s)	89, 252, 1006, 1554, 2348
AspS9I	GGNCC	2 cut(s)	590, 1544
AsuHPI	GGTGA	4 cut(s)	1006, 1801, 1873, 2366
AsuII	TTCGAA	1 cut(s)	1850
AsuNHI	GCTAGC	1 cut(s)	1732
AvaI	CYCGRG	1 cut(s)	941
AvaII	GGWCC	1 cut(s)	1544
BalI	TGGCCA	1 cut(s)	2114
BanII	GRGCYC	2 cut(s)	150, 432
BarI	GAAGNNNNNNTAC	2 cut(s)	1790, 1822
BbrPI	CACGTG	1 cut(s)	404
BbsI	GAAGAC	2 cut(s)	27, 1158
Bbv12I	GWGCWC	2 cut(s)	150, 1195
BbvCI	CCTCAGC	1 cut(s)	1761
BbvI	GCAGC	4 cut(s)	298, 904, 1753, 2086
BccI	CCATC	5 cut(s)	769, 868, 1391, 2042, 2104
BceAI	ACGGC	1 cut(s)	1757
BcgI	CGANNNNNNTGC	2 cut(s)	1064, 1098
BciT130I	CCWGG	2 cut(s)	38, 728
BciVI	GTATCC	1 cut(s)	502
BclI	TGATCA	3 cut(s)	1099, 1981, 2029
BcoDI	GTCTC	3 cut(s)	701, 1453, 1695
BfaI	CTAG	3 cut(s)	597, 1577, 1733
BfoI	RGCGCY	1 cut(s)	1555
BfuAI	ACCTGC	2 cut(s)	666, 724
BfuI	GTATCC	1 cut(s)	502
BglII	AGATCT	1 cut(s)	385
BisI	GCNGC	5 cut(s)	42, 287, 918, 1767, 2100
BlsI	GCNGC	5 cut(s)	43, 288, 919, 1768, 2101
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	38, 728
Bme18I	GGWCC	1 cut(s)	1544
BmeT110I	CYCGRG	1 cut(s)	941
BmgT120I	GGNCC	2 cut(s)	590, 1544
BmiI	GGNNCC	1 cut(s)	591
BmrFI	CCNGG	2 cut(s)	38, 728
BmrI	ACTGGG	1 cut(s)	883
BmsI	GCATC	9 cut(s)	91, 126, 493, 511, 567, 1084, 1890, 2020, 2301
BmtI	GCTAGC	1 cut(s)	1736
BmuI	ACTGGG	1 cut(s)	883
BpiI	GAAGAC	2 cut(s)	27, 1158
BpmI	CTGGAG	3 cut(s)	749, 1560, 1877
Bpu10I	CCTNAGC	3 cut(s)	369, 1728, 1761
Bpu14I	TTCGAA	1 cut(s)	1850
BpuEI	CTTGAG	3 cut(s)	104, 438, 907
BsaAI	YACGTR	3 cut(s)	404, 425, 638
BsaI	GGTCTC	1 cut(s)	701
BsaJI	CCNNGG	1 cut(s)	2125
BsaWI	WCCGGW	2 cut(s)	1078, 1133
BsaXI	ACNNNNNCTCC	2 cut(s)	1555, 1585
Bsc4I	CCNNNNNNNGG	7 cut(s)	425, 482, 733, 895, 1025, 1255, 2110
Bse118I	RCCGGY	1 cut(s)	53
Bse1I	ACTGG	3 cut(s)	889, 1276, 2140
Bse3DI	GCAATG	2 cut(s)	985, 1760
BseAI	TCCGGA	2 cut(s)	1078, 1133
BseBI	CCWGG	2 cut(s)	38, 728
BseDI	CCNNGG	1 cut(s)	2125
BseGI	GGATG	9 cut(s)	379, 508, 526, 582, 1046, 1075, 1402, 1905, 2053
BseLI	CCNNNNNNNGG	7 cut(s)	425, 482, 733, 895, 1025, 1255, 2110
BseMI	GCAATG	2 cut(s)	985, 1760
BseMII	CTCAG	9 cut(s)	121, 146, 543, 682, 965, 1335, 1706, 1719, 1752
BseNI	ACTGG	3 cut(s)	889, 1276, 2140
BseRI	GAGGAG	2 cut(s)	254, 1454
BseXI	GCAGC	4 cut(s)	298, 904, 1753, 2086
BseYI	CCCAGC	2 cut(s)	2103, 2272
BsgI	GTGCAG	1 cut(s)	305
Bsh1236I	CGCG	2 cut(s)	87, 252
BshFI	GGCC	4 cut(s)	41, 57, 592, 2114
BsiHKAI	GWGCWC	2 cut(s)	150, 1195
BsiHKCI	CYCGRG	1 cut(s)	941
BsiSI	CCGG	4 cut(s)	45, 54, 1079, 1134
BsiWI	CGTACG	1 cut(s)	1797
BslFI	GGGAC	4 cut(s)	125, 1414, 1553, 1900
BslI	CCNNNNNNNGG	7 cut(s)	425, 482, 733, 895, 1025, 1255, 2110
BsmAI	GTCTC	3 cut(s)	701, 1453, 1695
BsmFI	GGGAC	4 cut(s)	125, 1414, 1553, 1900
BsmI	GAATGC	3 cut(s)	73, 408, 2294
BsnI	GGCC	4 cut(s)	41, 57, 592, 2114
Bso31I	GGTCTC	1 cut(s)	701
BsoBI	CYCGRG	1 cut(s)	941
Bsp119I	TTCGAA	1 cut(s)	1850
Bsp1286I	GDGCHC	3 cut(s)	150, 432, 1195
Bsp13I	TCCGGA	2 cut(s)	1078, 1133
Bsp1407I	TGTACA	3 cut(s)	326, 699, 2221
BspACI	CCGC	7 cut(s)	42, 151, 252, 506, 574, 1522, 2314
BspANI	GGCC	4 cut(s)	41, 57, 592, 2114
BspCNI	CTCAG	9 cut(s)	120, 145, 544, 681, 966, 1336, 1705, 1720, 1753
BspEI	TCCGGA	2 cut(s)	1078, 1133
BspFNI	CGCG	2 cut(s)	87, 252
BspHI	TCATGA	1 cut(s)	1408
BspLI	GGNNCC	1 cut(s)	591
BspMI	ACCTGC	2 cut(s)	666, 724
BspOI	GCTAGC	1 cut(s)	1736
BspPI	GGATC	3 cut(s)	343, 1089, 1481
BspT104I	TTCGAA	1 cut(s)	1850
BspTNI	GGTCTC	1 cut(s)	701
BsrDI	GCAATG	2 cut(s)	985, 1760
BsrFI	RCCGGY	1 cut(s)	53
BsrGI	TGTACA	3 cut(s)	326, 699, 2221
BsrI	ACTGG	3 cut(s)	889, 1276, 2140
BssAI	RCCGGY	1 cut(s)	53
BssECI	CCNNGG	1 cut(s)	2125
Bst2UI	CCWGG	2 cut(s)	38, 728
Bst6I	CTCTTC	4 cut(s)	21, 1410, 1488, 2156
BstAPI	GCANNNNNTGC	2 cut(s)	2099, 2300
BstAUI	TGTACA	3 cut(s)	326, 699, 2221
BstBAI	YACGTR	3 cut(s)	404, 425, 638
BstBI	TTCGAA	1 cut(s)	1850
BstDSI	CCRYGG	1 cut(s)	2125
BstENI	CCTNNNNNAGG	1 cut(s)	731
BstF5I	GGATG	9 cut(s)	379, 508, 526, 582, 1046, 1075, 1402, 1905, 2053
BstFNI	CGCG	2 cut(s)	87, 252
BstH2I	RGCGCY	1 cut(s)	1555
BstHHI	GCGC	5 cut(s)	89, 252, 1006, 1554, 2348
BstMAI	GTCTC	3 cut(s)	701, 1453, 1695
BstNI	CCWGG	2 cut(s)	38, 728
BstNSI	RCATGY	5 cut(s)	82, 293, 665, 1018, 1907
BstSCI	CCNGG	2 cut(s)	36, 726
BstUI	CGCG	2 cut(s)	87, 252
BstV1I	GCAGC	4 cut(s)	298, 904, 1753, 2086
BstV2I	GAAGAC	2 cut(s)	27, 1158
BstX2I	RGATCY	3 cut(s)	335, 385, 1486
BstXI	CCANNNNNNTGG	1 cut(s)	727
BstYI	RGATCY	3 cut(s)	335, 385, 1486
BsuI	GTATCC	1 cut(s)	502
BsuRI	GGCC	4 cut(s)	41, 57, 592, 2114
BtgI	CCRYGG	1 cut(s)	2125
BtgZI	GCGATG	1 cut(s)	68
BtsCI	GGATG	9 cut(s)	379, 508, 526, 582, 1046, 1075, 1402, 1905, 2053
BtsIMutI	CAGTG	4 cut(s)	549, 885, 1991, 2133
BveI	ACCTGC	2 cut(s)	666, 724
CaiI	CAGNNNCTG	2 cut(s)	139, 1727
CciI	TCATGA	1 cut(s)	1408
CfoI	GCGC	5 cut(s)	89, 252, 1006, 1554, 2348
Cfr10I	RCCGGY	1 cut(s)	53
Cfr13I	GGNCC	2 cut(s)	590, 1544
CseI	GACGC	2 cut(s)	122, 1644
DraI	TTTAAA	1 cut(s)	1971
EaeI	YGGCCR	2 cut(s)	39, 2112
Eam1104I	CTCTTC	4 cut(s)	21, 1410, 1488, 2156
EarI	CTCTTC	4 cut(s)	21, 1410, 1488, 2156
Ecl136II	GAGCTC	1 cut(s)	148
Eco24I	GRGCYC	2 cut(s)	150, 432
Eco31I	GGTCTC	1 cut(s)	701
Eco32I	GATATC	1 cut(s)	871
Eco47I	GGWCC	1 cut(s)	1544
Eco53kI	GAGCTC	1 cut(s)	148
Eco57I	CTGAAG	1 cut(s)	839
Eco72I	CACGTG	1 cut(s)	404
Eco88I	CYCGRG	1 cut(s)	941
EcoICRI	GAGCTC	1 cut(s)	148
EcoNI	CCTNNNNNAGG	1 cut(s)	731
EcoO109I	RGGNCCY	1 cut(s)	590
EcoRI	GAATTC	3 cut(s)	1259, 1447, 1802
EcoRII	CCWGG	2 cut(s)	36, 726
EcoRV	GATATC	1 cut(s)	871
EcoT22I	ATGCAT	3 cut(s)	84, 1905, 2296
EcoT38I	GRGCYC	2 cut(s)	150, 432
FaqI	GGGAC	4 cut(s)	125, 1414, 1553, 1900
FbaI	TGATCA	3 cut(s)	1099, 1981, 2029
Fnu4HI	GCNGC	5 cut(s)	42, 287, 918, 1767, 2100
FokI	GGATG	9 cut(s)	386, 515, 533, 589, 1033, 1062, 1409, 1912, 2060
FriOI	GRGCYC	2 cut(s)	150, 432
Fsp4HI	GCNGC	5 cut(s)	42, 287, 918, 1767, 2100
FspBI	CTAG	3 cut(s)	597, 1577, 1733
GlaI	GCGC	5 cut(s)	88, 251, 1005, 1553, 2347
GluI	GCNGC	5 cut(s)	42, 287, 918, 1767, 2100
GsaI	CCCAGC	2 cut(s)	2107, 2276
GsuI	CTGGAG	3 cut(s)	749, 1560, 1877
HaeII	RGCGCY	1 cut(s)	1555
HaeIII	GGCC	4 cut(s)	41, 57, 592, 2114
HapII	CCGG	4 cut(s)	45, 54, 1079, 1134
HgaI	GACGC	2 cut(s)	122, 1644
HhaI	GCGC	5 cut(s)	89, 252, 1006, 1554, 2348
Hin6I	GCGC	5 cut(s)	87, 250, 1004, 1552, 2346
HinP1I	GCGC	5 cut(s)	87, 250, 1004, 1552, 2346
HincII	GTYRAC	2 cut(s)	1012, 1659
HindII	GTYRAC	2 cut(s)	1012, 1659
HindIII	AAGCTT	5 cut(s)	161, 563, 960, 1232, 1964
HinfI	GANTC	9 cut(s)	48, 95, 415, 723, 1402, 1847, 1888, 2264, 2279
HpaII	CCGG	4 cut(s)	45, 54, 1079, 1134
HphI	GGTGA	4 cut(s)	1006, 1801, 1873, 2366
Hpy166II	GTNNAC	4 cut(s)	327, 343, 1012, 1659
Hpy188I	TCNGA	9 cut(s)	10, 135, 145, 414, 490, 675, 1604, 1695, 1846
Hpy8I	GTNNAC	4 cut(s)	327, 343, 1012, 1659
Hpy99I	CGWCG	1 cut(s)	14
HpyAV	CCTTC	7 cut(s)	82, 491, 674, 1061, 1342, 2038, 2185
HpyCH4IV	ACGT	4 cut(s)	403, 424, 637, 1008
HpySE526I	ACGT	4 cut(s)	403, 424, 637, 1008
HspAI	GCGC	5 cut(s)	87, 250, 1004, 1552, 2346
Kpn2I	TCCGGA	2 cut(s)	1078, 1133
KroI	GCCGGC	1 cut(s)	53
KroNI	GCCGGC	1 cut(s)	55
Ksp22I	TGATCA	3 cut(s)	1099, 1981, 2029
LmnI	GCTCC	8 cut(s)	145, 153, 367, 627, 730, 1198, 1441, 1729
Lsp1109I	GCAGC	4 cut(s)	298, 904, 1753, 2086
LweI	GCATC	9 cut(s)	91, 126, 493, 511, 567, 1084, 1890, 2020, 2301
MaeI	CTAG	3 cut(s)	597, 1577, 1733
MaeII	ACGT	4 cut(s)	403, 424, 637, 1008
MaeIII	GTNAC	6 cut(s)	399, 443, 1033, 1219, 1861, 2261
MfeI	CAATTG	2 cut(s)	742, 1607
MflI	RGATCY	3 cut(s)	335, 385, 1486
MhlI	GDGCHC	3 cut(s)	150, 432, 1195
MlsI	TGGCCA	1 cut(s)	2114
MluNI	TGGCCA	1 cut(s)	2114
MlyI	GAGTC	6 cut(s)	89, 732, 1396, 1882, 2258, 2288
MmeI	TCCRAC	6 cut(s)	33, 85, 123, 123, 468, 933
Mox20I	TGGCCA	1 cut(s)	2114
Mph1103I	ATGCAT	3 cut(s)	84, 1905, 2296
MroI	TCCGGA	2 cut(s)	1078, 1133
MroNI	GCCGGC	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	71
MscI	TGGCCA	1 cut(s)	2114
MslI	CAYNNNNRTG	2 cut(s)	554, 932
Msp20I	TGGCCA	1 cut(s)	2114
MspI	CCGG	4 cut(s)	45, 54, 1079, 1134
MspR9I	CCNGG	2 cut(s)	38, 728
MunI	CAATTG	2 cut(s)	742, 1607
Mva1269I	GAATGC	3 cut(s)	73, 408, 2294
MvaI	CCWGG	2 cut(s)	38, 728
MvnI	CGCG	2 cut(s)	87, 252
NaeI	GCCGGC	1 cut(s)	55
NgoMIV	GCCGGC	1 cut(s)	53
NheI	GCTAGC	1 cut(s)	1732
NlaIV	GGNNCC	1 cut(s)	591
NmeAIII	GCCGAG	3 cut(s)	107, 226, 2015
NmuCI	GTSAC	4 cut(s)	399, 1219, 1861, 2261
NsiI	ATGCAT	3 cut(s)	84, 1905, 2296
NspI	RCATGY	5 cut(s)	82, 293, 665, 1018, 1907
NspV	TTCGAA	1 cut(s)	1850
PaeI	GCATGC	1 cut(s)	293
PagI	TCATGA	1 cut(s)	1408
PctI	GAATGC	3 cut(s)	73, 408, 2294
PdiI	GCCGGC	1 cut(s)	55
PdmI	GAANNNNTTC	1 cut(s)	71
PfeI	GAWTC	3 cut(s)	48, 415, 1847
Pfl23II	CGTACG	1 cut(s)	1797
PflMI	CCANNNNNTGG	2 cut(s)	895, 2110
PfoI	TCCNGGA	1 cut(s)	726
PkrI	GCNGC	5 cut(s)	43, 288, 919, 1768, 2101
PleI	GAGTC	6 cut(s)	89, 731, 1396, 1882, 2258, 2287
PmaCI	CACGTG	1 cut(s)	404
PmlI	CACGTG	1 cut(s)	404
PpsI	GAGTC	6 cut(s)	89, 731, 1396, 1882, 2258, 2287
Ppu21I	YACGTR	3 cut(s)	404, 425, 638
PshBI	ATTAAT	1 cut(s)	1370
PsiI	TTATAA	1 cut(s)	1301
Psp124BI	GAGCTC	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	36, 726
PspCI	CACGTG	1 cut(s)	404
PspFI	CCCAGC	2 cut(s)	2103, 2272
PspGI	CCWGG	2 cut(s)	36, 726
PspLI	CGTACG	1 cut(s)	1797
PspN4I	GGNNCC	1 cut(s)	591
PspPI	GGNCC	2 cut(s)	590, 1544
PsrI	GAACNNNNNNTAC	2 cut(s)	2122, 2154
PstNI	CAGNNNCTG	2 cut(s)	139, 1727
PsuI	RGATCY	3 cut(s)	335, 385, 1486
RseI	CAYNNNNRTG	2 cut(s)	554, 932
SacI	GAGCTC	1 cut(s)	150
SatI	GCNGC	5 cut(s)	42, 287, 918, 1767, 2100
Sau96I	GGNCC	2 cut(s)	590, 1544
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	6 cut(s)	89, 732, 1396, 1882, 2258, 2288
ScrFI	CCNGG	2 cut(s)	38, 728
SduI	GDGCHC	3 cut(s)	150, 432, 1195
SfaNI	GCATC	9 cut(s)	91, 126, 493, 511, 567, 1084, 1890, 2020, 2301
SfuI	TTCGAA	1 cut(s)	1850
SinI	GGWCC	1 cut(s)	1544
SmiMI	CAYNNNNRTG	2 cut(s)	554, 932
SmlI	CTYRAG	3 cut(s)	119, 453, 922
SmoI	CTYRAG	3 cut(s)	119, 453, 922
SphI	GCATGC	1 cut(s)	293
SsiI	CCGC	7 cut(s)	42, 151, 252, 506, 574, 1522, 2314
SspMI	CTAG	3 cut(s)	597, 1577, 1733
SstI	GAGCTC	1 cut(s)	150
StyD4I	CCNGG	2 cut(s)	36, 726
TaiI	ACGT	4 cut(s)	406, 427, 640, 1011
TaqI	TCGA	4 cut(s)	1084, 1353, 1386, 1850
TatI	WGTACW	6 cut(s)	123, 326, 699, 1041, 1746, 2221
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	3 cut(s)	48, 415, 1847
TscAI	CASTG	4 cut(s)	556, 885, 1991, 2140
TseFI	GTSAC	4 cut(s)	399, 1219, 1861, 2261
TseI	GCWGC	4 cut(s)	286, 917, 1766, 2099
Tsp45I	GTSAC	4 cut(s)	399, 1219, 1861, 2261
TspGWI	ACGGA	1 cut(s)	27
TspRI	CASTG	4 cut(s)	556, 885, 1991, 2140
Van91I	CCANNNNNTGG	2 cut(s)	895, 2110
VpaK11BI	GGWCC	1 cut(s)	1544
VspI	ATTAAT	1 cut(s)	1370
XagI	CCTNNNNNAGG	1 cut(s)	731
XapI	RAATTY	6 cut(s)	1058, 1259, 1447, 1674, 1802, 1839
XceI	RCATGY	5 cut(s)	82, 293, 665, 1018, 1907
XmnI	GAANNNNTTC	1 cut(s)	71
XspI	CTAG	3 cut(s)	597, 1577, 1733
ZrmI	AGTACT	1 cut(s)	125
Zsp2I	ATGCAT	3 cut(s)	84, 1905, 2296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.