pycom02g10370

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0006217
Physical Location & Seq
Forward (+)
7199387 .. 7200774
1388 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g10370.1

Sequence Viewer

Length: 1119 bp
ATGCCTAAAGATGTGTGTTTGGCTCAAGCTAAGGGCAGTGGAATGTTAGCAGTTCCTTCTGATCTTGACATAGTTTCTAGAGCTGGCAGCTCACGGTCAGAAGAAGCATCATATGCAGGCATTCAAACAAAAGATGATAGAAGAATCGTTGTTGACGAAAACCAAATGGAGAGTTCTAGCAATGATATGGGGACTCCCCTTAGATCACTTCGTAAATCATGTGAAAGTTCATCGGGTACAACTGAAAAAGCCACATCTGCACAGAAAAGGAAAGTGAAAAATGTATCAAAGTATGTCATCAGTGCAGCAAAGAACCCAGAGTTTGCACAAAAACTACATGTTGTCTTGTTGGAAAGTGGTGCATCACCTCCTGCAGATTTATTTTCAGATATGAATCCTCAATATCTGCATGAAGACAAGTTGCTTGGTCAAATGAATGCAGATGGGAAACTTGTAGATGATGGGATTCATAATTATTTGGTCCAATTATTATCAGGCAATGAGCTGTCCACTCAAACTGCTGCTGAAGTGAGCTATGCCAATTTTGATAACTTGTTGAAACAATCTTCCTTGGATTTAGCTGAGCAACGAAATGAATCAGAGACAAACAAGTTTTCTCTTCTCTTAGATACTGTTGAGGAGGGATTTGTAATCGTGTCTGGTGGAACTAGTGAAACAACCCAGATTTGTAATCCTGTTCTTGATAATCCCCCAATGAACTCCGAAGCTTTTAACGAGTATAAAGAATCAGTGAGTAAGCCAATGGACAGATGCAATAGTGGCCTGTGTACTAGTTGTGATGGTCACTATGAGAGGTATCCCGCACTAGGGGAAGTTGCAGAGTGGGAAATTCTATGGGAGGATCTTCAGATTGGTGAACGCATTGGCATTGGTAAGCACAGGTTCAGAATTTTGTTGCTTAAATTTGGAATACTTTGTAAAAACAGGTTCAATATAATTTCTGTTTTTGTAGGTTCCTATGGTGAGGTATATCATGCAGATTGGAATGGCACTGAAGTAGCTGTGAAAAAGTTTTTAGATCAAGATTTTTCTGGTGATGCATTAGTTCAGTTTAAATGTGAAGTAAGCTCACGCCTGCTTTTATCTCAATTGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

373

Amino Acids

41.03

Weight (kDa)

4.96

Isoelectric Point (pI)

40.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 822
AclWI GGATC 1 cut(s) 870
AcsI RAATTY 3 cut(s) 849, 909, 923
AcuI CTGAAG 3 cut(s) 546, 851, 1035
AfaI GTAC 2 cut(s) 238, 790
AfiI CCNNNNNNNGG 2 cut(s) 827, 828
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 3 cut(s) 125, 559, 952
AhlI ACTAGT 2 cut(s) 668, 791
AluBI AGCT 9 cut(s) 29, 83, 90, 505, 534, 581, 728, 1022, 1089
AluI AGCT 9 cut(s) 29, 83, 90, 505, 534, 581, 728, 1022, 1089
Alw26I GTCTC 1 cut(s) 596
AlwI GGATC 1 cut(s) 870
AoxI GGCC 1 cut(s) 781
ApeKI GCWGC 3 cut(s) 87, 305, 521
ApoI RAATTY 3 cut(s) 849, 909, 923
AspS9I GGNCC 1 cut(s) 481
AsuHPI GGTGA 4 cut(s) 357, 887, 995, 1067
AvaII GGWCC 1 cut(s) 481
BbsI GAAGAC 1 cut(s) 420
BbvI GCAGC 3 cut(s) 99, 317, 508
BccI CCATC 3 cut(s) 437, 455, 794
BciVI GTATCC 1 cut(s) 828
BcoDI GTCTC 1 cut(s) 596
BcuI ACTAGT 2 cut(s) 668, 791
BfaI CTAG 5 cut(s) 78, 177, 669, 792, 827
BfmI CTRYAG 1 cut(s) 372
BfuI GTATCC 1 cut(s) 828
BisI GCNGC 3 cut(s) 88, 306, 522
BlpI GCTNAGC 1 cut(s) 582
BlsI GCNGC 3 cut(s) 89, 307, 523
Bme18I GGWCC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 481
BmiI GGNNCC 1 cut(s) 976
BmsI GCATC 4 cut(s) 116, 371, 761, 1048
BpiI GAAGAC 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 582
BpuEI CTTGAG 1 cut(s) 9
BsaBI GATNNNNATC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 570
Bsc4I CCNNNNNNNGG 2 cut(s) 827, 828
Bse3DI GCAATG 2 cut(s) 187, 505
Bse8I GATNNNNATC 1 cut(s) 393
BseDI CCNNGG 1 cut(s) 570
BseJI GATNNNNATC 1 cut(s) 393
BseLI CCNNNNNNNGG 2 cut(s) 827, 828
BseMI GCAATG 2 cut(s) 187, 505
BseMII CTCAG 1 cut(s) 573
BseRI GAGGAG 1 cut(s) 653
BseXI GCAGC 3 cut(s) 99, 317, 508
BsgI GTGCAG 2 cut(s) 243, 324
BshFI GGCC 1 cut(s) 783
BslFI GGGAC 1 cut(s) 205
BslI CCNNNNNNNGG 2 cut(s) 827, 828
BsmAI GTCTC 1 cut(s) 596
BsmFI GGGAC 1 cut(s) 205
BsmI GAATGC 2 cut(s) 120, 442
BsnI GGCC 1 cut(s) 783
Bsp143I GATC 4 cut(s) 61, 203, 862, 1039
Bsp1720I GCTNAGC 1 cut(s) 582
BspACI CCGC 1 cut(s) 822
BspANI GGCC 1 cut(s) 783
BspCNI CTCAG 1 cut(s) 574
BspLI GGNNCC 1 cut(s) 976
BspMAI CTGCAG 1 cut(s) 376
BspPI GGATC 1 cut(s) 870
BsrDI GCAATG 2 cut(s) 187, 505
BssECI CCNNGG 1 cut(s) 570
BssMI GATC 4 cut(s) 61, 203, 862, 1039
BssT1I CCWWGG 1 cut(s) 570
Bst4CI ACNGT 2 cut(s) 96, 634
Bst6I CTCTTC 1 cut(s) 624
BstAPI GCANNNNNTGC 1 cut(s) 113
BstC8I GCNNGC 3 cut(s) 85, 118, 1097
BstDEI CTNAG 4 cut(s) 30, 200, 582, 625
BstKTI GATC 4 cut(s) 64, 206, 865, 1042
BstMAI GTCTC 1 cut(s) 596
BstMBI GATC 4 cut(s) 61, 203, 862, 1039
BstMWI GCNNNNNNNGC 3 cut(s) 113, 257, 780
BstNSI RCATGY 1 cut(s) 341
BstSFI CTRYAG 1 cut(s) 372
BstV1I GCAGC 3 cut(s) 99, 317, 508
BstV2I GAAGAC 1 cut(s) 420
BstX2I RGATCY 1 cut(s) 862
BstYI RGATCY 1 cut(s) 862
BsuI GTATCC 1 cut(s) 828
BsuRI GGCC 1 cut(s) 783
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 4 cut(s) 43, 307, 756, 1011
Cac8I GCNNGC 3 cut(s) 85, 118, 1097
Cfr13I GGNCC 1 cut(s) 481
Csp6I GTAC 2 cut(s) 237, 789
CviAII CATG 4 cut(s) 219, 338, 410, 995
CviQI GTAC 2 cut(s) 237, 789
DdeI CTNAG 4 cut(s) 30, 200, 582, 625
DpnI GATC 4 cut(s) 63, 205, 864, 1041
DpnII GATC 4 cut(s) 61, 203, 862, 1039
DraI TTTAAA 1 cut(s) 1075
Eam1104I CTCTTC 1 cut(s) 624
EarI CTCTTC 1 cut(s) 624
Eco130I CCWWGG 1 cut(s) 570
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 3 cut(s) 546, 851, 1035
EcoT14I CCWWGG 1 cut(s) 570
EcoT22I ATGCAT 1 cut(s) 1063
ErhI CCWWGG 1 cut(s) 570
FaeI CATG 4 cut(s) 222, 341, 413, 998
FaqI GGGAC 1 cut(s) 205
FatI CATG 4 cut(s) 218, 337, 409, 994
FauI CCCGC 1 cut(s) 829
FauNDI CATATG 1 cut(s) 112
Fnu4HI GCNGC 3 cut(s) 88, 306, 522
Fsp4HI GCNGC 3 cut(s) 88, 306, 522
FspBI CTAG 5 cut(s) 78, 177, 669, 792, 827
GluI GCNGC 3 cut(s) 88, 306, 522
HaeIII GGCC 1 cut(s) 783
Hin1II CATG 4 cut(s) 222, 341, 413, 998
HincII GTYRAC 1 cut(s) 154
HindII GTYRAC 1 cut(s) 154
HindIII AAGCTT 1 cut(s) 726
HinfI GANTC 6 cut(s) 144, 193, 394, 466, 596, 746
HphI GGTGA 4 cut(s) 357, 887, 995, 1067
Hpy166II GTNNAC 4 cut(s) 154, 510, 789, 878
Hpy188I TCNGA 7 cut(s) 61, 100, 388, 601, 724, 870, 908
Hpy188III TCNNGA 4 cut(s) 65, 78, 701, 1043
Hpy8I GTNNAC 4 cut(s) 154, 510, 789, 878
HpyAV CCTTC 1 cut(s) 66
HpyCH4III ACNGT 2 cut(s) 96, 634
HpyF10VI GCNNNNNNNGC 3 cut(s) 113, 257, 780
HpyF3I CTNAG 4 cut(s) 30, 200, 582, 625
Hsp92II CATG 4 cut(s) 222, 341, 413, 998
Kzo9I GATC 4 cut(s) 61, 203, 862, 1039
Lsp1109I GCAGC 3 cut(s) 99, 317, 508
LweI GCATC 4 cut(s) 116, 371, 761, 1048
MaeI CTAG 5 cut(s) 78, 177, 669, 792, 827
MaeIII GTNAC 1 cut(s) 803
MalI GATC 4 cut(s) 63, 205, 864, 1041
MboI GATC 4 cut(s) 61, 203, 862, 1039
MboII GAAGA 6 cut(s) 113, 153, 425, 558, 611, 857
MfeI CAATTG 1 cut(s) 1109
MflI RGATCY 1 cut(s) 862
MluCI AATT 8 cut(s) 472, 485, 541, 849, 909, 923, 957, 1109
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 7 cut(s) 378, 408, 631, 634, 807, 853, 979
Mph1103I ATGCAT 1 cut(s) 1063
MseI TTAA 3 cut(s) 732, 921, 1074
MunI CAATTG 1 cut(s) 1109
Mva1269I GAATGC 2 cut(s) 120, 442
MwoI GCNNNNNNNGC 3 cut(s) 113, 257, 780
NdeI CATATG 1 cut(s) 112
NdeII GATC 4 cut(s) 61, 203, 862, 1039
NlaIII CATG 4 cut(s) 222, 341, 413, 998
NlaIV GGNNCC 1 cut(s) 976
NmuCI GTSAC 1 cut(s) 803
NsiI ATGCAT 1 cut(s) 1063
NspI RCATGY 1 cut(s) 341
PciI ACATGT 1 cut(s) 337
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 2 cut(s) 120, 442
PfeI GAWTC 5 cut(s) 144, 394, 466, 596, 746
PkrI GCNGC 3 cut(s) 89, 307, 523
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
PscI ACATGT 1 cut(s) 337
PspN4I GGNNCC 1 cut(s) 976
PspPI GGNCC 1 cut(s) 481
PstI CTGCAG 1 cut(s) 376
PsuI RGATCY 1 cut(s) 862
RsaI GTAC 2 cut(s) 238, 790
RsaNI GTAC 2 cut(s) 237, 789
SaqAI TTAA 3 cut(s) 732, 921, 1074
SatI GCNGC 3 cut(s) 88, 306, 522
Sau3AI GATC 4 cut(s) 61, 203, 862, 1039
Sau96I GGNCC 1 cut(s) 481
SchI GAGTC 1 cut(s) 187
SfaNI GCATC 4 cut(s) 116, 371, 761, 1048
SfcI CTRYAG 1 cut(s) 372
SinI GGWCC 1 cut(s) 481
SmlI CTYRAG 1 cut(s) 24
SmoI CTYRAG 1 cut(s) 24
SpeI ACTAGT 2 cut(s) 668, 791
Sse9I AATT 8 cut(s) 472, 485, 541, 849, 909, 923, 957, 1109
SsiI CCGC 1 cut(s) 822
SspMI CTAG 5 cut(s) 78, 177, 669, 792, 827
StyI CCWWGG 1 cut(s) 570
TaaI ACNGT 2 cut(s) 96, 634
TasI AATT 8 cut(s) 472, 485, 541, 849, 909, 923, 957, 1109
TatI WGTACW 1 cut(s) 788
TfiI GAWTC 5 cut(s) 144, 394, 466, 596, 746
Tru1I TTAA 3 cut(s) 732, 921, 1074
Tru9I TTAA 3 cut(s) 732, 921, 1074
TscAI CASTG 4 cut(s) 43, 307, 756, 1018
TseFI GTSAC 1 cut(s) 803
TseI GCWGC 3 cut(s) 87, 305, 521
Tsp45I GTSAC 1 cut(s) 803
TspDTI ATGAA 7 cut(s) 219, 407, 426, 449, 458, 609, 731
TspRI CASTG 4 cut(s) 43, 307, 756, 1018
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 3 cut(s) 849, 909, 923
XbaI TCTAGA 1 cut(s) 77
XceI RCATGY 1 cut(s) 341
XspI CTAG 5 cut(s) 78, 177, 669, 792, 827
Zsp2I ATGCAT 1 cut(s) 1063
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.