pycom12g06840

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0006217
Physical Location & Seq
Reverse (-)
7102210 .. 7102937
728 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g06840.1

Sequence Viewer

Length: 597 bp
ATGAATCCTCAATATCTACATGAAGACAAGTTGCTTGGTCAAATGAATGCAGATGGGAAACTTGTAGATGATGGGATTCATAATTATTTGGTCCAATTATTATCAGGCAATGAGTTGTCCACTCAAACTGCTGCTGAAGTGAGCTATGCCAATTTTGATAACTTGCTGAAACAATCTTCCTTGGATTTAGCTAAGCAACGAAATGAATCAAAGACAAACAAGTTTTCTCTTCTCTTAGATACTGTTGAGGAGGGATTTGTAATCGTGTCTGGTGGAACTAGTGAAACAACCCAGATTTGTAATCATGTTCTTGATAATCCCCCAATGAACTCCGAAGCTTTTAACGAGTATAAAGAACCAGTGAGTAAGCCAATGGACAGATGCAATAGTGGCCTGTGTACTAGTTGTGATAGTCACTATGAGAGGTATCCCGCACTAGGGGAAGTTGCAGAGTTCCTATGGCGAGGTATATCATGCAGATTGGAATGGCACTGTAAGTGTTATTCATCTTATACTTTCCCATATTTTCTTTGTATCTCTAGCTCTCAAAGTGTTTGTATGATTCTCAAACATCGATATTTTGTCAATAATCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001666 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006082 GO:0006464 GO:0006468 GO:0006629 GO:0006720 GO:0006721 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009628 GO:0009685 GO:0009686 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009744 GO:0009746 GO:0009750 GO:0009756 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010104 GO:0010105 GO:0010182 GO:0010646 GO:0010648 GO:0010817 GO:0012505 GO:0016020 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0019752 GO:0023051 GO:0023052 GO:0023057 GO:0031984 GO:0034284 GO:0034285 GO:0036211 GO:0036293 GO:0040034 GO:0042175 GO:0042221 GO:0042445 GO:0042446 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046777 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051239 GO:0051302 GO:0051716 GO:0065007 GO:0065008 GO:0070297 GO:0070298 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071704 GO:0098827 GO:0140096 GO:1901564 GO:1901576 GO:1901700 GO:1901701 GO:1902531 GO:1902532 GO:2000026 GO:2000035 GO:2000069 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko04010 map04010
Pfam Domains
Protein Families
EDR1 Pkinase_Tyr

Protein Analysis

199

Amino Acids

22.49

Weight (kDa)

5.33

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 432
AcuI CTGAAG 1 cut(s) 156
AfaI GTAC 1 cut(s) 400
AfiI CCNNNNNNNGG 2 cut(s) 437, 438
AhlI ACTAGT 2 cut(s) 278, 401
AluBI AGCT 4 cut(s) 144, 191, 338, 543
AluI AGCT 4 cut(s) 144, 191, 338, 543
AoxI GGCC 1 cut(s) 391
ApeKI GCWGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 91
AvaII GGWCC 1 cut(s) 91
BbsI GAAGAC 1 cut(s) 30
BbvI GCAGC 1 cut(s) 118
BccI CCATC 2 cut(s) 47, 65
BciVI GTATCC 1 cut(s) 438
BcuI ACTAGT 2 cut(s) 278, 401
BfaI CTAG 4 cut(s) 279, 402, 437, 540
BfuI GTATCC 1 cut(s) 438
BisI GCNGC 1 cut(s) 132
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 1 cut(s) 91
BmgT120I GGNCC 1 cut(s) 91
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 192
Bsa29I ATCGAT 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 180
Bsc4I CCNNNNNNNGG 2 cut(s) 437, 438
Bse1I ACTGG 1 cut(s) 359
Bse3DI GCAATG 1 cut(s) 115
BseCI ATCGAT 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 180
BseLI CCNNNNNNNGG 2 cut(s) 437, 438
BseMI GCAATG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 359
BseRI GAGGAG 1 cut(s) 263
BseXI GCAGC 1 cut(s) 118
BshFI GGCC 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 574
BslI CCNNNNNNNGG 2 cut(s) 437, 438
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 1 cut(s) 393
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 1 cut(s) 432
BspANI GGCC 1 cut(s) 393
BspDI ATCGAT 1 cut(s) 574
BsrDI GCAATG 1 cut(s) 115
BsrI ACTGG 1 cut(s) 359
BssECI CCNNGG 1 cut(s) 180
BssT1I CCWWGG 1 cut(s) 180
Bst4CI ACNGT 2 cut(s) 244, 494
Bst6I CTCTTC 1 cut(s) 234
BstDEI CTNAG 2 cut(s) 192, 235
BstMWI GCNNNNNNNGC 1 cut(s) 390
BstV1I GCAGC 1 cut(s) 118
BstV2I GAAGAC 1 cut(s) 30
Bsu15I ATCGAT 1 cut(s) 574
BsuI GTATCC 1 cut(s) 438
BsuRI GGCC 1 cut(s) 393
BsuTUI ATCGAT 1 cut(s) 574
BtsIMutI CAGTG 2 cut(s) 366, 490
Cfr13I GGNCC 1 cut(s) 91
ClaI ATCGAT 1 cut(s) 574
Csp6I GTAC 1 cut(s) 399
CviAII CATG 3 cut(s) 20, 305, 474
CviJI RGCY 6 cut(s) 144, 191, 338, 370, 393, 543
CviKI_1 RGCY 6 cut(s) 144, 191, 338, 370, 393, 543
CviQI GTAC 1 cut(s) 399
DdeI CTNAG 2 cut(s) 192, 235
Eam1104I CTCTTC 1 cut(s) 234
EarI CTCTTC 1 cut(s) 234
Eco130I CCWWGG 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 156
EcoT14I CCWWGG 1 cut(s) 180
ErhI CCWWGG 1 cut(s) 180
FaeI CATG 3 cut(s) 23, 308, 477
FatI CATG 3 cut(s) 19, 304, 473
FauI CCCGC 1 cut(s) 439
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 4 cut(s) 279, 402, 437, 540
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 393
Hin1II CATG 3 cut(s) 23, 308, 477
HindIII AAGCTT 1 cut(s) 336
HinfI GANTC 4 cut(s) 4, 76, 206, 562
Hpy166II GTNNAC 2 cut(s) 120, 399
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 1 cut(s) 311
Hpy8I GTNNAC 2 cut(s) 120, 399
HpyCH4III ACNGT 2 cut(s) 244, 494
HpyCH4V TGCA 4 cut(s) 50, 384, 449, 477
HpyF10VI GCNNNNNNNGC 1 cut(s) 390
HpyF3I CTNAG 2 cut(s) 192, 235
Hsp92II CATG 3 cut(s) 23, 308, 477
LpnPI CCDG 5 cut(s) 90, 255, 305, 372, 407
Lsp1109I GCAGC 1 cut(s) 118
LweI GCATC 1 cut(s) 371
MaeI CTAG 4 cut(s) 279, 402, 437, 540
MaeIII GTNAC 1 cut(s) 413
MboII GAAGA 3 cut(s) 35, 168, 221
MluCI AATT 3 cut(s) 82, 95, 151
MnlI CCTC 5 cut(s) 18, 241, 244, 417, 458
MseI TTAA 1 cut(s) 342
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 390
NlaIII CATG 3 cut(s) 23, 308, 477
NmuCI GTSAC 1 cut(s) 413
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 4 cut(s) 4, 76, 206, 562
PkrI GCNGC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 91
RsaI GTAC 1 cut(s) 400
RsaNI GTAC 1 cut(s) 399
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 1 cut(s) 91
SetI ASST 6 cut(s) 146, 193, 340, 428, 469, 545
SfaNI GCATC 1 cut(s) 371
SinI GGWCC 1 cut(s) 91
SpeI ACTAGT 2 cut(s) 278, 401
Sse9I AATT 3 cut(s) 82, 95, 151
SsiI CCGC 1 cut(s) 432
SspMI CTAG 4 cut(s) 279, 402, 437, 540
StyI CCWWGG 1 cut(s) 180
TaaI ACNGT 2 cut(s) 244, 494
TaqI TCGA 1 cut(s) 574
TasI AATT 3 cut(s) 82, 95, 151
TatI WGTACW 1 cut(s) 398
TfiI GAWTC 4 cut(s) 4, 76, 206, 562
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 2 cut(s) 366, 497
TseFI GTSAC 1 cut(s) 413
TseI GCWGC 1 cut(s) 131
Tsp45I GTSAC 1 cut(s) 413
TspDTI ATGAA 7 cut(s) 17, 36, 59, 68, 219, 341, 495
TspRI CASTG 2 cut(s) 366, 497
VpaK11BI GGWCC 1 cut(s) 91
XspI CTAG 4 cut(s) 279, 402, 437, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.