pycom02g10600

Domain in histone families 1 and 5

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0013454
Physical Location & Seq
Forward (+)
7342414 .. 7344053
1640 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
ATGTTGTACAAATTTTTGATCGATTACGTATGTGAAAAGTTGATTAGGCGTTTTCTTTACTCTGTTTTCGCGATGTCAGCCACCGAAGAAGTTCAAGTTCCTGCCGTCATGGACCCGCCGCCAACGGAGGCTCCGGCGACGGAGGAGCCCAAGAAGGAAGAAAAGCCGGTTAAGCAGACGAAACCCAGGACTCCGAAAGAGAGGAAGCCACAACAGCCAAAACCCAAAACCAAAACCGCCGCTCATCCTCCATACTTTCAGATGATAAAAGAGGCACTTTTGGCTCTGAACGAGAAGAGCGGGTCGAGTCCGTACGCCATAGCAAAGCACATGGAGGAGAAGCACAAGGCGGTGCTGCCGGCGAATTTCAAGAAGACCCTGGCTCTGCAGCTGAAGAACTCGGCGGCGAGAGGGAAGCTGATCGAGATCAGGGCCTCGTACAAGCTCTCGGAGGCGGGGCAGAAGGAGAAATCCGCAGCCAAAACAGCCGCCGTTGAGAAACCAAAATCGGAGAAGAAGACCAAAACGACCTCGTCTGGTAAGAAGCCGGGAAGGAAGAACAAGAAGTCGGCCGCAGCCAAGCCGAAGCAGCCCAAGTCGATCAAGAGCTCTGCTGCTAAGAAATCTATGAAGTCTGCTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Linker_histone

Protein Analysis

215

Amino Acids

23.67

Weight (kDa)

10.11

Isoelectric Point (pI)

44.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Linker_histone PF00538 82 - 145 1.2e-14 linker histone H1 and H5 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013454)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G18050 AT2G18050
fragaria_vesca FvH4_1g12030
malus_domestica MD02G1134400.v1.1 MD15G1247400.v1.1
prunus_persica Prupe.7G166400_v2.0.a1
pyrus_communis pycom02g10600 pycom15g21750
rosa_chinensis RchiOBHm_Chr2g0099661
rosa_laevigata RLG00000016902
rosa_multiflora Rmu_sc0005120.1_g000018
rosa_roxburghii Rroxscaffold_2G00142870
rosa_rugosa Rorug02G0081800
rosa_samantha Rh2AG131400 Rh2BG134700 Rh2CG135600 Rh2DG136100
rosa_wichuraiana Rw2G010170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 242, 300
AccII CGCG 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 570
AcsI RAATTY 2 cut(s) 11, 364
AcuI CTGAAG 1 cut(s) 413
AfaI GTAC 3 cut(s) 8, 314, 440
AgsI TTSAA 2 cut(s) 95, 370
AjnI CCWGG 2 cut(s) 185, 378
AluBI AGCT 4 cut(s) 391, 418, 445, 609
AluI AGCT 4 cut(s) 391, 418, 445, 609
Alw21I GWGCWC 1 cut(s) 611
AoxI GGCC 2 cut(s) 432, 570
ApeKI GCWGC 7 cut(s) 355, 388, 476, 575, 589, 614, 638
ApoI RAATTY 2 cut(s) 11, 364
Asp700I GAANNNNTTC 1 cut(s) 90
AspS9I GGNCC 2 cut(s) 112, 432
AsuC2I CCSGG 1 cut(s) 549
AvaII GGWCC 1 cut(s) 112
BanII GRGCYC 2 cut(s) 150, 611
BbsI GAAGAC 2 cut(s) 380, 524
Bbv12I GWGCWC 1 cut(s) 611
BbvI GCAGC 7 cut(s) 342, 400, 488, 587, 601, 601, 625
BceAI ACGGC 2 cut(s) 89, 476
BciT130I CCWGG 2 cut(s) 187, 380
BcnI CCSGG 1 cut(s) 549
BfmI CTRYAG 1 cut(s) 386
Bme1390I CCNGG 3 cut(s) 187, 380, 549
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 2 cut(s) 112, 432
BmiI GGNNCC 3 cut(s) 114, 132, 147
BmrFI CCNGG 3 cut(s) 187, 380, 549
BpiI GAAGAC 2 cut(s) 380, 524
BpuMI CCSGG 1 cut(s) 549
Bsa29I ATCGAT 1 cut(s) 21
BsaAI YACGTR 1 cut(s) 28
BsaBI GATNNNNATC 1 cut(s) 425
BsaJI CCNNGG 2 cut(s) 185, 378
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bse118I RCCGGY 2 cut(s) 166, 358
Bse8I GATNNNNATC 1 cut(s) 425
BseBI CCWGG 2 cut(s) 187, 380
BseCI ATCGAT 1 cut(s) 21
BseDI CCNNGG 2 cut(s) 185, 378
BseGI GGATG 1 cut(s) 244
BseJI GATNNNNATC 1 cut(s) 425
BseRI GAGGAG 2 cut(s) 158, 350
BseX3I CGGCCG 1 cut(s) 570
BseXI GCAGC 7 cut(s) 342, 400, 488, 587, 601, 601, 625
Bsh1236I CGCG 1 cut(s) 71
Bsh1285I CGRYCG 1 cut(s) 573
BshFI GGCC 2 cut(s) 434, 572
BshVI ATCGAT 1 cut(s) 21
BsiEI CGRYCG 1 cut(s) 573
BsiHKAI GWGCWC 1 cut(s) 611
BsiSI CCGG 4 cut(s) 134, 167, 359, 548
BsiWI CGTACG 1 cut(s) 312
BsnI GGCC 2 cut(s) 434, 572
Bsp1286I GDGCHC 2 cut(s) 150, 611
Bsp1407I TGTACA 1 cut(s) 6
Bsp143I GATC 4 cut(s) 18, 420, 426, 600
Bsp68I TCGCGA 1 cut(s) 71
BspANI GGCC 2 cut(s) 434, 572
BspDI ATCGAT 1 cut(s) 21
BspFNI CGCG 1 cut(s) 71
BspLI GGNNCC 3 cut(s) 114, 132, 147
BspMAI CTGCAG 1 cut(s) 390
BspQI GCTCTTC 1 cut(s) 290
BsrBI CCGCTC 2 cut(s) 242, 300
BsrFI RCCGGY 2 cut(s) 166, 358
BsrGI TGTACA 1 cut(s) 6
BssAI RCCGGY 2 cut(s) 166, 358
BssECI CCNNGG 2 cut(s) 185, 378
BssMI GATC 4 cut(s) 18, 420, 426, 600
Bst2UI CCWGG 2 cut(s) 187, 380
Bst6I CTCTTC 1 cut(s) 290
BstAUI TGTACA 1 cut(s) 6
BstBAI YACGTR 1 cut(s) 28
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 1 cut(s) 618
BstF5I GGATG 1 cut(s) 244
BstFNI CGCG 1 cut(s) 71
BstKTI GATC 4 cut(s) 21, 423, 429, 603
BstMBI GATC 4 cut(s) 18, 420, 426, 600
BstMCI CGRYCG 1 cut(s) 573
BstMWI GCNNNNNNNGC 6 cut(s) 77, 172, 214, 281, 485, 589
BstNI CCWGG 2 cut(s) 187, 380
BstSCI CCNGG 3 cut(s) 185, 378, 547
BstSFI CTRYAG 1 cut(s) 386
BstSNI TACGTA 1 cut(s) 28
BstUI CGCG 1 cut(s) 71
BstV1I GCAGC 7 cut(s) 342, 400, 488, 587, 601, 601, 625
BstV2I GAAGAC 2 cut(s) 380, 524
BstZI CGGCCG 1 cut(s) 570
Bsu15I ATCGAT 1 cut(s) 21
BsuRI GGCC 2 cut(s) 434, 572
BsuTUI ATCGAT 1 cut(s) 21
BtgZI GCGATG 1 cut(s) 86
BtsCI GGATG 1 cut(s) 244
BtuMI TCGCGA 1 cut(s) 71
Cac8I GCNNGC 1 cut(s) 360
Cfr10I RCCGGY 2 cut(s) 166, 358
Cfr13I GGNCC 2 cut(s) 112, 432
ClaI ATCGAT 1 cut(s) 21
Csp6I GTAC 3 cut(s) 7, 313, 439
CviAII CATG 2 cut(s) 109, 331
CviQI GTAC 3 cut(s) 7, 313, 439
DdeI CTNAG 1 cut(s) 618
DpnI GATC 4 cut(s) 20, 422, 428, 602
DpnII GATC 4 cut(s) 18, 420, 426, 600
EaeI YGGCCR 1 cut(s) 570
EagI CGGCCG 1 cut(s) 570
Eam1104I CTCTTC 1 cut(s) 290
EarI CTCTTC 1 cut(s) 290
Ecl136II GAGCTC 1 cut(s) 609
EclXI CGGCCG 1 cut(s) 570
Eco105I TACGTA 1 cut(s) 28
Eco24I GRGCYC 2 cut(s) 150, 611
Eco47I GGWCC 1 cut(s) 112
Eco52I CGGCCG 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 413
EcoICRI GAGCTC 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 432
EcoRII CCWGG 2 cut(s) 185, 378
EcoT38I GRGCYC 2 cut(s) 150, 611
FaeI CATG 2 cut(s) 112, 334
FaiI YATR 6 cut(s) 31, 110, 253, 320, 332, 629
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 2 cut(s) 108, 330
FauI CCCGC 3 cut(s) 123, 293, 448
FokI GGATG 1 cut(s) 231
FriOI GRGCYC 2 cut(s) 150, 611
HaeIII GGCC 2 cut(s) 434, 572
HapII CCGG 4 cut(s) 134, 167, 359, 548
Hin1II CATG 2 cut(s) 112, 334
HinfI GANTC 2 cut(s) 190, 307
HpaII CCGG 4 cut(s) 134, 167, 359, 548
Hpy188I TCNGA 5 cut(s) 195, 261, 288, 451, 511
Hpy188III TCNNGA 4 cut(s) 70, 370, 424, 604
Hpy99I CGWCG 1 cut(s) 142
HpyAV CCTTC 3 cut(s) 148, 457, 546
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 1 cut(s) 388
HpyF10VI GCNNNNNNNGC 6 cut(s) 77, 172, 214, 281, 485, 589
HpyF3I CTNAG 1 cut(s) 618
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 2 cut(s) 112, 334
KroI GCCGGC 1 cut(s) 358
KroNI GCCGGC 1 cut(s) 360
Kzo9I GATC 4 cut(s) 18, 420, 426, 600
LguI GCTCTTC 1 cut(s) 290
LmnI GCTCC 2 cut(s) 136, 145
Lsp1109I GCAGC 7 cut(s) 342, 400, 488, 587, 601, 601, 625
MaeII ACGT 1 cut(s) 27
MalI GATC 4 cut(s) 20, 422, 428, 602
MbiI CCGCTC 2 cut(s) 242, 300
MboI GATC 4 cut(s) 18, 420, 426, 600
MboII GAAGA 8 cut(s) 98, 170, 307, 385, 406, 526, 529, 568
MhlI GDGCHC 2 cut(s) 150, 611
MluCI AATT 2 cut(s) 11, 364
MlyI GAGTC 2 cut(s) 184, 316
MroNI GCCGGC 1 cut(s) 358
MroXI GAANNNNTTC 1 cut(s) 90
MseI TTAA 1 cut(s) 171
MspA1I CMGCKG 1 cut(s) 391
MspI CCGG 4 cut(s) 134, 167, 359, 548
MspR9I CCNGG 3 cut(s) 187, 380, 549
MvaI CCWGG 2 cut(s) 187, 380
MvnI CGCG 1 cut(s) 71
MwoI GCNNNNNNNGC 6 cut(s) 77, 172, 214, 281, 485, 589
NaeI GCCGGC 1 cut(s) 360
NciI CCSGG 1 cut(s) 549
NdeII GATC 4 cut(s) 18, 420, 426, 600
NgoMIV GCCGGC 1 cut(s) 358
NlaIII CATG 2 cut(s) 112, 334
NlaIV GGNNCC 3 cut(s) 114, 132, 147
NmeAIII GCCGAG 1 cut(s) 380
NruI TCGCGA 1 cut(s) 71
PciSI GCTCTTC 1 cut(s) 290
PdiI GCCGGC 1 cut(s) 360
PdmI GAANNNNTTC 1 cut(s) 90
Pfl23II CGTACG 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 532
PleI GAGTC 2 cut(s) 184, 315
PpsI GAGTC 2 cut(s) 184, 315
Ppu21I YACGTR 1 cut(s) 28
Psp124BI GAGCTC 1 cut(s) 611
Psp6I CCWGG 2 cut(s) 185, 378
PspGI CCWGG 2 cut(s) 185, 378
PspLI CGTACG 1 cut(s) 312
PspN4I GGNNCC 3 cut(s) 114, 132, 147
PspPI GGNCC 2 cut(s) 112, 432
PstI CTGCAG 1 cut(s) 390
PsyI GACNNNGTC 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 391
RruI TCGCGA 1 cut(s) 71
RsaI GTAC 3 cut(s) 8, 314, 440
RsaNI GTAC 3 cut(s) 7, 313, 439
SacI GAGCTC 1 cut(s) 611
SapI GCTCTTC 1 cut(s) 290
SaqAI TTAA 1 cut(s) 171
Sau3AI GATC 4 cut(s) 18, 420, 426, 600
Sau96I GGNCC 2 cut(s) 112, 432
SchI GAGTC 2 cut(s) 184, 316
ScrFI CCNGG 3 cut(s) 187, 380, 549
SduI GDGCHC 2 cut(s) 150, 611
SetI ASST 6 cut(s) 30, 393, 420, 447, 533, 611
SfcI CTRYAG 1 cut(s) 386
SinI GGWCC 1 cut(s) 112
SnaBI TACGTA 1 cut(s) 28
Sse9I AATT 2 cut(s) 11, 364
SstI GAGCTC 1 cut(s) 611
StyD4I CCNGG 3 cut(s) 185, 378, 547
TaiI ACGT 1 cut(s) 30
TaqI TCGA 4 cut(s) 21, 305, 423, 599
TasI AATT 2 cut(s) 11, 364
TatI WGTACW 1 cut(s) 6
TauI GCSGC 5 cut(s) 121, 242, 407, 491, 575
Tru1I TTAA 1 cut(s) 171
Tru9I TTAA 1 cut(s) 171
TseI GCWGC 7 cut(s) 355, 388, 476, 575, 589, 614, 638
TspDTI ATGAA 1 cut(s) 644
TspGWI ACGGA 3 cut(s) 140, 155, 300
Tth111I GACNNNGTC 1 cut(s) 532
VpaK11BI GGWCC 1 cut(s) 112
XapI RAATTY 2 cut(s) 11, 364
XmnI GAANNNNTTC 1 cut(s) 90
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.