pycom02g10870

RTE1-HOMOLOG-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0005598
Physical Location & Seq
Forward (+)
7658820 .. 7659798
979 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 828 bp
ATGTTTGGTCATAAGATGTTCAGAAAGCATTCCGTTTTATCTTGTATACAACACAATTTGAAAATTCTCTGTCTAATAGTTGATTGTGAAGTGTCTAATGTTTTTGAGGCAATTGAGCAGCTTCCAATTTTGGCAATGGAAACAAGTGCAGGCCCCGAGCACAACTTGATGATTGGTGGAAGTGATTCACCGACTTTGCAAATTGACCCCAAAAGATCCCGGTTCCCATGCTGCATTGTGTGGACACCCCTTCCTGTTATTTCATGGTTGGTTCCTTTCGTTGGCCACATTGGCATATGCAGAGAAGATGGCGTCATATTGGACTTTGCGGGGCCCAATTTCGTGTGCGTGGATAACTTTTCTTTTGGAGCAGCAACTCGGTACATCCAAATAAACAAAGAAAAGTGTTGCACTATTCCCGATCCGTCTGAGTACCAAAGTGAGGATCAATATGGGGAGAATGAACCTGGTAGAGACATAAAGACATGGGATGATGCACTCCGGAAGGGCACTCAGGAATTCCAACACCGAGCATACAACCTTTTTACCTGCAATTGCCACTCCTTCGTAGCCAACAACCTAAACAGGTTAGGGTTTCGGTCTGGTGGGTGGAATGTGGTGAACCTTGCAGCTCTGATCTTCCTCAAGGGTCAGTGGGTGAGCACAGCAGCCGTGGTGCAGTCCTTACTACCGTTTTTAATAATATTCTGTCTCGGAGTTGCATTAGCAGGTTCAACCTTCCTAACGTACTTAGGTTTCTTCACCGCCTTTCTTGTCGGTTGGTTTCTTCTTGGTACGTACTGTTTCAAGAGTTTGATCCAATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04016 map04016
Pfam Domains
Protein Families
DUF778

Protein Analysis

276

Amino Acids

30.78

Weight (kDa)

6.15

Isoelectric Point (pI)

40.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RTE1 PF05608 69 - 217 7.3e-71 RTE1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 557, 719
AccI GTMKAC 1 cut(s) 46
AccIII TCCGGA 1 cut(s) 501
AciI CCGC 2 cut(s) 329, 765
AclWI GGATC 4 cut(s) 210, 416, 453, 811
AcoI YGGCCR 1 cut(s) 283
AcsI RAATTY 2 cut(s) 63, 518
AcyI GRCGYC 1 cut(s) 312
AfaI GTAC 5 cut(s) 383, 434, 749, 796, 800
AfiI CCNNNNNNNGG 2 cut(s) 281, 442
AgsI TTSAA 3 cut(s) 61, 735, 808
AjnI CCWGG 1 cut(s) 466
AluBI AGCT 2 cut(s) 121, 632
AluI AGCT 2 cut(s) 121, 632
Alw21I GWGCWC 2 cut(s) 162, 665
Alw26I GTCTC 2 cut(s) 468, 716
AlwI GGATC 4 cut(s) 210, 416, 453, 811
Ama87I CYCGRG 1 cut(s) 155
Aor13HI TCCGGA 1 cut(s) 501
AoxI GGCC 3 cut(s) 151, 283, 332
ApaI GGGCCC 1 cut(s) 336
ApeKI GCWGC 5 cut(s) 118, 231, 371, 629, 668
ApoI RAATTY 2 cut(s) 63, 518
Asp700I GAANNNNTTC 2 cut(s) 28, 184
AspS9I GGNCC 3 cut(s) 152, 332, 333
AsuC2I CCSGG 1 cut(s) 220
AsuHPI GGTGA 4 cut(s) 180, 631, 670, 754
AvaI CYCGRG 1 cut(s) 155
BaeGI GKGCMC 2 cut(s) 336, 512
BalI TGGCCA 1 cut(s) 285
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 162, 665
BbvI GCAGC 5 cut(s) 130, 218, 383, 641, 680
BccI CCATC 1 cut(s) 302
BceAI ACGGC 1 cut(s) 656
BciT130I CCWGG 1 cut(s) 468
BcnI CCSGG 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 468, 716
BfuAI ACCTGC 2 cut(s) 557, 719
BglI GCCNNNNNGGC 1 cut(s) 291
BisI GCNGC 5 cut(s) 119, 232, 372, 630, 669
BlsI GCNGC 5 cut(s) 120, 233, 373, 631, 670
Bme1390I CCNGG 2 cut(s) 220, 468
BmeT110I CYCGRG 1 cut(s) 155
BmgT120I GGNCC 3 cut(s) 152, 332, 333
BmiI GGNNCC 5 cut(s) 154, 224, 273, 333, 334
BmrFI CCNGG 2 cut(s) 220, 468
BmsI GCATC 1 cut(s) 484
BpuEI CTTGAG 1 cut(s) 629
BpuMI CCSGG 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 798
BsaHI GRCGYC 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 672
BsaWI WCCGGW 1 cut(s) 501
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 442
Bse3DI GCAATG 1 cut(s) 141
BseAI TCCGGA 1 cut(s) 501
BseBI CCWGG 1 cut(s) 468
BseDI CCNNGG 1 cut(s) 672
BseGI GGATG 2 cut(s) 384, 496
BseLI CCNNNNNNNGG 2 cut(s) 281, 442
BseMI GCAATG 1 cut(s) 141
BseMII CTCAG 2 cut(s) 420, 527
BseSI GKGCMC 2 cut(s) 336, 512
BseXI GCAGC 5 cut(s) 130, 218, 383, 641, 680
BsgI GTGCAG 2 cut(s) 168, 698
BshFI GGCC 3 cut(s) 153, 285, 334
BsiHKAI GWGCWC 2 cut(s) 162, 665
BsiHKCI CYCGRG 1 cut(s) 155
BsiSI CCGG 2 cut(s) 220, 502
BslI CCNNNNNNNGG 2 cut(s) 281, 442
BsmAI GTCTC 2 cut(s) 468, 716
BsmI GAATGC 1 cut(s) 28
BsnI GGCC 3 cut(s) 153, 285, 334
BsoBI CYCGRG 1 cut(s) 155
Bsp120I GGGCCC 1 cut(s) 332
Bsp1286I GDGCHC 4 cut(s) 162, 336, 512, 665
Bsp13I TCCGGA 1 cut(s) 501
Bsp143I GATC 5 cut(s) 215, 421, 445, 636, 816
BspACI CCGC 2 cut(s) 329, 765
BspANI GGCC 3 cut(s) 153, 285, 334
BspCNI CTCAG 2 cut(s) 421, 526
BspEI TCCGGA 1 cut(s) 501
BspLI GGNNCC 5 cut(s) 154, 224, 273, 333, 334
BspMI ACCTGC 2 cut(s) 557, 719
BspPI GGATC 4 cut(s) 210, 416, 453, 811
BsrDI GCAATG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 672
BssMI GATC 5 cut(s) 215, 421, 445, 636, 816
BssNAI GTATAC 1 cut(s) 47
BssNI GRCGYC 1 cut(s) 312
Bst1107I GTATAC 1 cut(s) 47
Bst2UI CCWGG 1 cut(s) 468
Bst4CI ACNGT 2 cut(s) 693, 803
BstACI GRCGYC 1 cut(s) 312
BstBAI YACGTR 1 cut(s) 798
BstC8I GCNNGC 1 cut(s) 151
BstDEI CTNAG 3 cut(s) 429, 513, 751
BstDSI CCRYGG 1 cut(s) 672
BstF5I GGATG 2 cut(s) 384, 496
BstKTI GATC 5 cut(s) 218, 424, 448, 639, 819
BstMAI GTCTC 2 cut(s) 468, 716
BstMBI GATC 5 cut(s) 215, 421, 445, 636, 816
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 468
BstSCI CCNGG 2 cut(s) 218, 466
BstSLI GKGCMC 2 cut(s) 336, 512
BstSNI TACGTA 1 cut(s) 798
BstV1I GCAGC 5 cut(s) 130, 218, 383, 641, 680
BstX2I RGATCY 1 cut(s) 215
BstYI RGATCY 1 cut(s) 215
BstZ17I GTATAC 1 cut(s) 47
BsuRI GGCC 3 cut(s) 153, 285, 334
BtgI CCRYGG 1 cut(s) 672
BtsCI GGATG 2 cut(s) 384, 496
BtsIMutI CAGTG 1 cut(s) 659
BveI ACCTGC 2 cut(s) 557, 719
Cac8I GCNNGC 1 cut(s) 151
Cfr13I GGNCC 3 cut(s) 152, 332, 333
CseI GACGC 1 cut(s) 301
CsiI ACCWGGT 1 cut(s) 466
Csp6I GTAC 5 cut(s) 382, 433, 748, 795, 799
CviAII CATG 3 cut(s) 228, 264, 486
CviJI RGCY 7 cut(s) 121, 153, 285, 334, 572, 632, 671
CviKI_1 RGCY 7 cut(s) 121, 153, 285, 334, 572, 632, 671
CviQI GTAC 5 cut(s) 382, 433, 748, 795, 799
DdeI CTNAG 3 cut(s) 429, 513, 751
DpnI GATC 5 cut(s) 217, 423, 447, 638, 818
DpnII GATC 5 cut(s) 215, 421, 445, 636, 816
EaeI YGGCCR 1 cut(s) 283
Eco105I TACGTA 1 cut(s) 798
Eco24I GRGCYC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 155
EcoO109I RGGNCCY 2 cut(s) 152, 332
EcoRI GAATTC 1 cut(s) 518
EcoRII CCWGG 1 cut(s) 466
EcoT38I GRGCYC 1 cut(s) 336
FaeI CATG 3 cut(s) 231, 267, 489
FatI CATG 3 cut(s) 227, 263, 485
FauI CCCGC 1 cut(s) 322
FauNDI CATATG 1 cut(s) 296
FblI GTMKAC 1 cut(s) 46
Fnu4HI GCNGC 5 cut(s) 119, 232, 372, 630, 669
FokI GGATG 2 cut(s) 371, 503
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 5 cut(s) 119, 232, 372, 630, 669
GluI GCNGC 5 cut(s) 119, 232, 372, 630, 669
HaeIII GGCC 3 cut(s) 153, 285, 334
HapII CCGG 2 cut(s) 220, 502
HgaI GACGC 1 cut(s) 301
Hin1I GRCGYC 1 cut(s) 312
Hin1II CATG 3 cut(s) 231, 267, 489
HinfI GANTC 1 cut(s) 185
HpaII CCGG 2 cut(s) 220, 502
HphI GGTGA 4 cut(s) 180, 631, 670, 754
Hpy166II GTNNAC 3 cut(s) 47, 243, 622
Hpy188I TCNGA 4 cut(s) 23, 430, 636, 716
Hpy188III TCNNGA 4 cut(s) 419, 502, 515, 808
Hpy8I GTNNAC 3 cut(s) 47, 243, 622
HpyAV CCTTC 4 cut(s) 260, 499, 574, 748
HpyCH4III ACNGT 2 cut(s) 693, 803
HpyCH4IV ACGT 2 cut(s) 746, 797
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 3 cut(s) 429, 513, 751
HpySE526I ACGT 2 cut(s) 746, 797
Hsp92I GRCGYC 1 cut(s) 312
Hsp92II CATG 3 cut(s) 231, 267, 489
Kpn2I TCCGGA 1 cut(s) 501
Kzo9I GATC 5 cut(s) 215, 421, 445, 636, 816
LmnI GCTCC 1 cut(s) 368
Lsp1109I GCAGC 5 cut(s) 130, 218, 383, 641, 680
LweI GCATC 1 cut(s) 484
MabI ACCWGGT 1 cut(s) 466
MaeII ACGT 2 cut(s) 746, 797
MalI GATC 5 cut(s) 217, 423, 447, 638, 818
MboI GATC 5 cut(s) 215, 421, 445, 636, 816
MboII GAAGA 4 cut(s) 317, 631, 751, 779
MfeI CAATTG 3 cut(s) 111, 553, 821
MflI RGATCY 1 cut(s) 215
MhlI GDGCHC 4 cut(s) 162, 336, 512, 665
MlsI TGGCCA 1 cut(s) 285
MluCI AATT 9 cut(s) 55, 63, 111, 126, 201, 337, 518, 553, 821
MluNI TGGCCA 1 cut(s) 285
MmeI TCCRAC 1 cut(s) 547
MnlI CCTC 3 cut(s) 100, 436, 653
Mox20I TGGCCA 1 cut(s) 285
MroI TCCGGA 1 cut(s) 501
MroXI GAANNNNTTC 2 cut(s) 28, 184
MscI TGGCCA 1 cut(s) 285
MseI TTAA 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 285
MspI CCGG 2 cut(s) 220, 502
MspR9I CCNGG 2 cut(s) 220, 468
MunI CAATTG 3 cut(s) 111, 553, 821
Mva1269I GAATGC 1 cut(s) 28
MvaI CCWGG 1 cut(s) 468
MwoI GCNNNNNNNGC 1 cut(s) 291
NciI CCSGG 1 cut(s) 220
NdeI CATATG 1 cut(s) 296
NdeII GATC 5 cut(s) 215, 421, 445, 636, 816
NlaIII CATG 3 cut(s) 231, 267, 489
NlaIV GGNNCC 5 cut(s) 154, 224, 273, 333, 334
PctI GAATGC 1 cut(s) 28
PdmI GAANNNNTTC 2 cut(s) 28, 184
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 5 cut(s) 120, 233, 373, 631, 670
Ppu21I YACGTR 1 cut(s) 798
Psp6I CCWGG 1 cut(s) 466
PspGI CCWGG 1 cut(s) 466
PspN4I GGNNCC 5 cut(s) 154, 224, 273, 333, 334
PspOMI GGGCCC 1 cut(s) 332
PspPI GGNCC 3 cut(s) 152, 332, 333
PsuI RGATCY 1 cut(s) 215
RsaI GTAC 5 cut(s) 383, 434, 749, 796, 800
RsaNI GTAC 5 cut(s) 382, 433, 748, 795, 799
SaqAI TTAA 1 cut(s) 698
SatI GCNGC 5 cut(s) 119, 232, 372, 630, 669
Sau3AI GATC 5 cut(s) 215, 421, 445, 636, 816
Sau96I GGNCC 3 cut(s) 152, 332, 333
ScrFI CCNGG 2 cut(s) 220, 468
SduI GDGCHC 4 cut(s) 162, 336, 512, 665
SexAI ACCWGGT 1 cut(s) 466
SfaNI GCATC 1 cut(s) 484
SmlI CTYRAG 1 cut(s) 644
SmoI CTYRAG 1 cut(s) 644
SnaBI TACGTA 1 cut(s) 798
Sse9I AATT 9 cut(s) 55, 63, 111, 126, 201, 337, 518, 553, 821
SsiI CCGC 2 cut(s) 329, 765
SspI AATATT 1 cut(s) 705
StyD4I CCNGG 2 cut(s) 218, 466
TaaI ACNGT 2 cut(s) 693, 803
TaiI ACGT 2 cut(s) 749, 800
TaqII GACCGA 1 cut(s) 588
TasI AATT 9 cut(s) 55, 63, 111, 126, 201, 337, 518, 553, 821
TfiI GAWTC 1 cut(s) 185
Tru1I TTAA 1 cut(s) 698
Tru9I TTAA 1 cut(s) 698
TscAI CASTG 1 cut(s) 659
TseI GCWGC 5 cut(s) 118, 231, 371, 629, 668
TspDTI ATGAA 2 cut(s) 252, 477
TspGWI ACGGA 2 cut(s) 22, 414
TspRI CASTG 1 cut(s) 659
XapI RAATTY 2 cut(s) 63, 518
XmiI GTMKAC 1 cut(s) 46
XmnI GAANNNNTTC 2 cut(s) 28, 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.