Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0014081

Physical Location & Seq

Genomic Coordinates Reverse (-)

8441407 .. 8448489

Gene Structure 7083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3069 bp

ATGATGACGGAATACGAAGGGAGGTACGATGGGAACGGAGAGGACGCTGGCACCTACGCCGACGGCGGTTCCTCTCCCCAACCTCGTGCTGCCGTCCACGGCGGTGCCGACGATTACAGCGATTCCAAATCTCAGCATGAATCTCGTGATTACGAGAGAGAATCTTCAAAGAGCAGAGAAAAGGATAGAGATAAAGGGCGTGATAAGGAGAGGGACAGAGATAGGGAAAGGGACAGGGATCGGGACCGGGACAGAGATAGAGACAGGGGGAGAAGCAAGGACAAGGATAGGGACAGAGATAGGGTTAGGGATAGGGATCGTGATAGAGAAAGAGAAAGGGACCGGGACAGGGATCGCGATCGTCATCACAGAGACCGCCACAGGGATCGCGAGAGAAGTGAGCGACGGAGAGACAAGGACGACGACGATGATCACTACCGTACCCGGGACTCTGATAGACGGAGGGATTATGACAGAGACAGAGAGGATAGGCATAGGCACAAGTCCCGTTCTCGTTCAAGAGCTAGATCTGAGCACAAATCCAGATCGAGGTCACGTTCTCGTTCACGCTCAAAAAGCAAAAGGATTAGCGGTTTTGACATGGCACCTCCTGCTTCTGCAATGTTAGCTGGTGCTGCTGTTGCTGCAGCAGGGCAAATTCCTGGGACTAGTCCTACCATTCCAGGGATGTTCCCAAACATGTTCCCTCTGTCAACCGGTCAGCAGTTTGCACCCCTTCCAGTTATGCCTGTTCAGGCAATGACTCAACAGGCTACTAGGCATGCCCGACGAGTGTACGTTGGAGGGCTTCCTCCCACAGCAAACGAACAGTCTGTTGCTACATTTTTCAGCCAAGTTATGGCTGCTATTGGAGGGAACAGTGCTGGCCCAGGAGATGCTGTTGTCAATGTCTACATAAACCATGAAAAGAAATTTGCTTTTGTGGAGATGAGATCGGTTGAAGAGGCTAGCAATGCAATGGCTCTGGATGGAATTATTTTTGAGGGAGCCCCTGTTAAGGTACGGAGACCTAGTGATTACAACCCATCTCTGGCTGCAACACTCGGTCCAAGCCAGCCCAATCCCAATCTGAACCTGGCTGCTGTGGGGCTTACACCGGGTTCTGCTGGTGGGCTTGAGGGCCCTGACCGCATATTTGTTGGTGGGCTGCCATATTACTTCACAGAAGCATCGATCAAGGAGTTACTCGAGTCCTTTGGACCCCTTCGTGGTTTTGATTTAGTGAAAGACAGGGAAACAGGAAACTCAAAAGGCTATGCCTTTTGTGTTTACCAAGACCTTTCAGTTACAGACATAGCTTGTGCAGCGCTGAACGGTATTAAAATGGGCGACAAGACGCTTACAGTTAGGCGTGCTAACCAAGGTGCCAACCAGCCCAAACCTGAGCAAGAGAGCGTTCTGTTGCACGCACAGCAGCAAATTGCATTGCAGAGGTTCATGCTGTTGCAACCGCCTGGTTCTGTCGCCACCAAGGTTGTATGTTTAACTCAGGTAGTAACTGCAGATGAGCTTAGGGACGATACCGAGTATGATGATATCTTGGAAGACATGAGGCTTGAAGGCGAAAAGTTTGGTGCATTAGTGAACGTCATCATCCCGCGTCCAAGACCAGATGGTGAACTTGCCCCCGGTGTTGGGAAGGTGTTTTTGGAGTATGCAGATACTGATGGTTCCACAAAAGCCCGTACGGGGTTGAATGGCCGGAAATTTGGCGGCAATCAGGTGGTAGCAGTGTTTTATCCAGAGGACAAGTTCGGCCAGGGCGACTACGAGGTTCAAAAGAACAGAGCTTCCACCCAAAGCCCCCGAAAAGCTGCAAAAACCCTAAAAATGTCATCTTCGATTCCCCTCCGCCACCTCCGCCACCTATCCACCACCACCGCCAAGTCTACCCTCTCCATCTCAAAAGCCAAATCAAAGCTCCGAACCGAGTACGACCCTGACAAAGCCCTCCAGATTTATTCCTCCGTCTCCGAACACTACTCTTCTCCCACCTCGTCTCGCTACGCCCAGGATCTCACCGTCCGACGCCTCGCCAAGTCCCACCGTTTCGCTGACATCGAATCCTTCATTGAATCCCACAAAAATGACCCCAAAATCACCCAGGAGCCGTTCCTGTCCACCCTCATCCGATCCTACGGCCGCGCCGGCATGTTTGACCAGGCATTGAGGACCTTTGATCAGATGGACCAGCTGGGTACTCCCAGAACGGCCATTTCCTTCAACACTCTGCTGTCTGCCTGCAACGATTCGAAGCATTTCGACATAGTCTCCCAGCTTTTCGACGAAATTCCCAACAAGCATGGCGTCTCCCCTGATAAAGTGTCGTATGGTATACTGATTAAGTCGTATTGTGCTGCGGATAAGCCCGAGAAGGCGATGGAGACGCTGAGGTTGATGGAGGAGAAGGGTATTGAGATCACTGCGGTGACGTTCACCACAATTTTCAATGCTTTGTACAAGAAGGGCAATGGCGAAGAGGCGGAGAAGTTGTGGGATGAGATGGTGAAGAAGGGCGTTGAGGTTGATGCTGCGGCTTATAATGTGAAGATTATGTATGTCCATGGCGGGAGCGCGGACAATGTGAAAGCTTTGATAGAGGAAATGGTGAATGCCGGGCTGAAACCGGATACTATTAGTTACAATTACTTGATGACTTGCTATTGCAGGAATGGGATGATGGAAGAAGCTGTCAAGGTTTATGAGGGGTTGGAGGGAAATGCTTGTAATCCGAATGCTGCAACTTTTCGAACTTTGATATTTTATTTGTGTGAAAGTGGGGATTATGACAAGGCGTATAAAGTTTACAAGAGAAGTGTGGAGGTGCATAAGATTCCCGATTTCAATACAATGAAGTATTTGGCTGAAGGATTGGTGAAAAAGAAGAAGATGAAGGAGGCCAAGGGATTGATACGCACGATCAAGAAGAAGTTCCCTCCTAATGTTTTAGTTGCCTGGAAGAAATTGGAGCTGGGTCTAGGTTTGGCTTCTTCTGATACTGGTGCGTCTTCAGTCGCAGATGAGGAGGCTAAAGAGGCTACAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000243 GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005681 GO:0005684 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008187 GO:0008380 GO:0009605 GO:0009607 GO:0009617 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016604 GO:0016607 GO:0030628 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0036002 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0050896 GO:0051704 GO:0051707 GO:0070013 GO:0071004 GO:0071010 GO:0071704 GO:0089701 GO:0090304 GO:0097159 GO:0098542 GO:1901360 GO:1901363 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

1023

Amino Acids

114.4

Weight (kDa)

8.9

Isoelectric Point (pI)

45.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	265 - 339	6.8e-06	RNA recognition motif
RRM_1	PF00076	385 - 454	6.1e-17	RNA recognition motif
PPR_2	PF13041	715 - 755	4.9e-06	PPR repeat family
PPR_2	PF13041	745 - 792	3.3e-07	PPR repeat family
TPR_24	PF23276	774 - 858	5.7e-10	Fungal tetratrico peptide repeats
PPR_1	PF12854	776 - 808	2.4e-06	PPR repeat
PPR_2	PF13041	779 - 828	3.7e-11	PPR repeat family
PPR	PF01535	782 - 812	4.9e-06	PPR repeat
PPR_2	PF13041	816 - 856	2e-10	PPR repeat family
PPR	PF01535	817 - 847	4.8e-07	PPR repeat
PPR_long	PF17177	837 - 957	1.1e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	872 - 927	3.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	880 - 909	3.9e-08	PPR repeat
PPR_2	PF13041	883 - 931	3.4e-12	PPR repeat family
PPR	PF01535	886 - 911	4.8e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014081)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G18520 AT4G36680
fragaria_vesca	FvH4_1g13650
malus_domestica	MD02G1151200.v1.1 MD15G1265700.v1.1
prunus_persica	Prupe.7G151800_v2.0.a1
pyrus_communis	pycom02g11870 pycom15g23140
rosa_chinensis	RchiOBHm_Chr2g0102001
rosa_laevigata	RLG00000017125
rosa_multiflora	Rmu_co8487067.1_g000001
rosa_roxburghii	Rroxscaffold_2G00140840
rosa_samantha	Rh2AG151900 Rh2BG157300 Rh2CG157300 Rh2DG157400
rosa_wichuraiana	Rw2G011860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2562
AccB1I	GGYRCC	4 cut(s)	50, 104, 604, 1385
AccB7I	CCANNNNNTGG	1 cut(s)	859
AccI	GTMKAC	3 cut(s)	912, 1910, 2356
AccII	CGCG	5 cut(s)	357, 390, 1621, 2166, 2597
AclWI	GGATC	6 cut(s)	246, 324, 360, 393, 2043, 2148
AcoI	YGGCCR	4 cut(s)	1720, 1777, 2161, 2232
AcsI	RAATTY	4 cut(s)	657, 932, 1727, 2310
AcuI	CTGAAG	2 cut(s)	2907, 3015
AcyI	GRCGYC	2 cut(s)	2050, 2328
AfaI	GTAC	8 cut(s)	26, 442, 797, 1023, 1708, 1955, 2221, 2480
AfeI	AGCGCT	1 cut(s)	1329
AflIII	ACRYGT	1 cut(s)	699
AgeI	ACCGGT	1 cut(s)	716
AhlI	ACTAGT	1 cut(s)	668
AjuI	GAANNNNNNNTTGG	2 cut(s)	1652, 1684
AleI	CACNNNNGTG	2 cut(s)	102, 2447
AloI	GAACNNNNNNTCC	2 cut(s)	1796, 1828
Alw21I	GWGCWC	1 cut(s)	537
AlwI	GGATC	6 cut(s)	246, 324, 360, 393, 2043, 2148
AlwNI	CAGNNNCTG	1 cut(s)	1685
Ama87I	CYCGRG	3 cut(s)	444, 1208, 2390
Aor51HI	AGCGCT	1 cut(s)	1329
AoxI	GGCC	7 cut(s)	886, 1141, 1720, 1777, 2161, 2232, 2919
ApaI	GGGCCC	1 cut(s)	1145
ApoI	RAATTY	4 cut(s)	657, 932, 1727, 2310
ArsI	GACNNNNNNTTYG	4 cut(s)	815, 847, 1139, 1171
AsiGI	ACCGGT	1 cut(s)	716
Asp700I	GAANNNNTTC	2 cut(s)	2279, 2951
AspLEI	GCGC	3 cut(s)	1330, 2168, 2597
AspS9I	GGNCC	9 cut(s)	244, 340, 887, 1067, 1141, 1142, 1220, 2193, 2209
AsuC2I	CCSGG	7 cut(s)	248, 344, 445, 446, 1119, 1650, 2638
AsuHPI	GGTGA	8 cut(s)	1649, 2032, 2113, 2449, 2461, 2539, 2641, 2908
AsuII	TTCGAA	2 cut(s)	2273, 2770
AsuNHI	GCTAGC	1 cut(s)	968
AvaI	CYCGRG	3 cut(s)	444, 1208, 2390
AvaII	GGWCC	6 cut(s)	244, 340, 1067, 1220, 2193, 2209
BaeGI	GKGCMC	1 cut(s)	1145
BaeI	ACNNNNGTAYC	2 cut(s)	424, 457
BanI	GGYRCC	4 cut(s)	50, 104, 604, 1385
BanII	GRGCYC	2 cut(s)	1012, 1145
BauI	CACGAG	2 cut(s)	84, 144
BbsI	GAAGAC	2 cut(s)	1572, 3021
Bbv12I	GWGCWC	1 cut(s)	537
BbvCI	CCTCAGC	1 cut(s)	2411
BceAI	ACGGC	6 cut(s)	77, 79, 115, 2116, 2176, 2247
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciVI	GTATCC	1 cut(s)	2644
BclI	TGATCA	2 cut(s)	430, 2200
BcnI	CCSGG	7 cut(s)	248, 344, 445, 446, 1119, 1650, 2638
BcuI	ACTAGT	1 cut(s)	668
BfaI	CTAG	6 cut(s)	525, 669, 777, 969, 1032, 2999
BfmI	CTRYAG	3 cut(s)	645, 1521, 3060
BfoI	RGCGCY	1 cut(s)	1331
BfuI	GTATCC	1 cut(s)	2644
BglI	GCCNNNNNGGC	1 cut(s)	2169
BglII	AGATCT	1 cut(s)	527
Bme18I	GGWCC	6 cut(s)	244, 340, 1067, 1220, 2193, 2209
BmeT110I	CYCGRG	3 cut(s)	444, 1208, 2390
BmgT120I	GGNCC	9 cut(s)	244, 340, 887, 1067, 1141, 1142, 1220, 2193, 2209
BmsI	GCATC	3 cut(s)	886, 1199, 2539
BmtI	GCTAGC	1 cut(s)	972
BpiI	GAAGAC	2 cut(s)	1572, 3021
BpmI	CTGGAG	1 cut(s)	1958
Bpu10I	CCTNAGC	3 cut(s)	1404, 1532, 2411
Bpu14I	TTCGAA	2 cut(s)	2273, 2770
BpuEI	CTTGAG	1 cut(s)	1157
BpuMI	CCSGG	7 cut(s)	248, 344, 445, 446, 1119, 1650, 2638
Bsa29I	ATCGAT	1 cut(s)	1193
BsaBI	GATNNNNATC	3 cut(s)	315, 357, 363
BsaHI	GRCGYC	2 cut(s)	2050, 2328
BsaI	GGTCTC	2 cut(s)	366, 1021
BsaWI	WCCGGW	2 cut(s)	716, 2647
Bse118I	RCCGGY	2 cut(s)	716, 2168
Bse1I	ACTGG	2 cut(s)	740, 3025
Bse3DI	GCAATG	6 cut(s)	627, 765, 979, 984, 1445, 2497
Bse8I	GATNNNNATC	3 cut(s)	315, 357, 363
BseCI	ATCGAT	1 cut(s)	1193
BseGI	GGATG	6 cut(s)	693, 994, 1614, 2148, 2524, 2703
BseJI	GATNNNNATC	3 cut(s)	315, 357, 363
BseMI	GCAATG	6 cut(s)	627, 765, 979, 984, 1445, 2497
BseMII	CTCAG	5 cut(s)	146, 522, 1395, 1523, 2402
BseNI	ACTGG	2 cut(s)	740, 3025
BseRI	GAGGAG	2 cut(s)	2438, 3059
BseSI	GKGCMC	1 cut(s)	1145
BseX3I	CGGCCG	1 cut(s)	2161
BseYI	CCCAGC	3 cut(s)	2215, 2295, 2992
BsgI	GTGCAG	1 cut(s)	1344
Bsh1236I	CGCG	5 cut(s)	357, 390, 1621, 2166, 2597
Bsh1285I	CGRYCG	2 cut(s)	361, 2164
BshFI	GGCC	7 cut(s)	888, 1143, 1722, 1779, 2163, 2234, 2921
BshNI	GGYRCC	4 cut(s)	50, 104, 604, 1385
BshTI	ACCGGT	1 cut(s)	716
BshVI	ATCGAT	1 cut(s)	1193
BsiEI	CGRYCG	2 cut(s)	361, 2164
BsiHKAI	GWGCWC	1 cut(s)	537
BsiHKCI	CYCGRG	3 cut(s)	444, 1208, 2390
BsiWI	CGTACG	1 cut(s)	1706
BsmBI	CGTCTC	4 cut(s)	1996, 2025, 2335, 2399
BsmI	GAATGC	2 cut(s)	2638, 2761
BsnI	GGCC	7 cut(s)	888, 1143, 1722, 1779, 2163, 2234, 2921
Bso31I	GGTCTC	2 cut(s)	366, 1021
BsoBI	CYCGRG	3 cut(s)	444, 1208, 2390
Bsp119I	TTCGAA	2 cut(s)	2273, 2770
Bsp120I	GGGCCC	1 cut(s)	1141
Bsp1286I	GDGCHC	3 cut(s)	537, 1012, 1145
Bsp1407I	TGTACA	1 cut(s)	2478
Bsp19I	CCATGG	1 cut(s)	2584
Bsp68I	TCGCGA	2 cut(s)	357, 390
BspANI	GGCC	7 cut(s)	888, 1143, 1722, 1779, 2163, 2234, 2921
BspCNI	CTCAG	5 cut(s)	145, 523, 1396, 1522, 2403
BspDI	ATCGAT	1 cut(s)	1193
BspFNI	CGCG	5 cut(s)	357, 390, 1621, 2166, 2597
BspMAI	CTGCAG	2 cut(s)	649, 1525
BspOI	GCTAGC	1 cut(s)	972
BspPI	GGATC	6 cut(s)	246, 324, 360, 393, 2043, 2148
BspT104I	TTCGAA	2 cut(s)	2273, 2770
BspT107I	GGYRCC	4 cut(s)	50, 104, 604, 1385
BspTNI	GGTCTC	2 cut(s)	366, 1021
BsrDI	GCAATG	6 cut(s)	627, 765, 979, 984, 1445, 2497
BsrFI	RCCGGY	2 cut(s)	716, 2168
BsrGI	TGTACA	1 cut(s)	2478
BsrI	ACTGG	2 cut(s)	740, 3025
BssAI	RCCGGY	2 cut(s)	716, 2168
BssNAI	GTATAC	1 cut(s)	2357
BssNI	GRCGYC	2 cut(s)	2050, 2328
BssSI	CACGAG	2 cut(s)	84, 144
BssT1I	CCWWGG	4 cut(s)	1381, 1491, 2584, 2922
Bst1107I	GTATAC	1 cut(s)	2357
Bst2BI	CACGAG	2 cut(s)	84, 144
Bst4CI	ACNGT	7 cut(s)	440, 831, 881, 1337, 1366, 2044, 2069
Bst6I	CTCTTC	3 cut(s)	957, 2011, 2493
BstACI	GRCGYC	2 cut(s)	2050, 2328
BstAPI	GCANNNNNTGC	1 cut(s)	611
BstAUI	TGTACA	1 cut(s)	2478
BstBI	TTCGAA	2 cut(s)	2273, 2770
BstC8I	GCNNGC	9 cut(s)	49, 783, 886, 970, 1076, 1374, 1428, 2170, 2263
BstDEI	CTNAG	6 cut(s)	132, 531, 1404, 1509, 1532, 2411
BstDSI	CCRYGG	2 cut(s)	97, 2584
BstF5I	GGATG	6 cut(s)	693, 994, 1614, 2148, 2524, 2703
BstFNI	CGCG	5 cut(s)	357, 390, 1621, 2166, 2597
BstH2I	RGCGCY	1 cut(s)	1331
BstHHI	GCGC	3 cut(s)	1330, 2168, 2597
BstMCI	CGRYCG	2 cut(s)	361, 2164
BstNSI	RCATGY	3 cut(s)	703, 785, 2176
BstSFI	CTRYAG	3 cut(s)	645, 1521, 3060
BstSLI	GKGCMC	1 cut(s)	1145
BstUI	CGCG	5 cut(s)	357, 390, 1621, 2166, 2597
BstV2I	GAAGAC	2 cut(s)	1572, 3021
BstX2I	RGATCY	2 cut(s)	527, 2035
BstYI	RGATCY	2 cut(s)	527, 2035
BstZ17I	GTATAC	1 cut(s)	2357
BstZI	CGGCCG	1 cut(s)	2161
Bsu15I	ATCGAT	1 cut(s)	1193
BsuI	GTATCC	1 cut(s)	2644
BsuRI	GGCC	7 cut(s)	888, 1143, 1722, 1779, 2163, 2234, 2921
BsuTUI	ATCGAT	1 cut(s)	1193
BtgI	CCRYGG	2 cut(s)	97, 2584
BtgZI	GCGATG	1 cut(s)	2414
BtsCI	GGATG	6 cut(s)	693, 994, 1614, 2148, 2524, 2703
BtsI	GCAGTG	2 cut(s)	1758, 2442
BtsIMutI	CAGTG	3 cut(s)	886, 1758, 2442
BtuMI	TCGCGA	2 cut(s)	357, 390
Cac8I	GCNNGC	9 cut(s)	49, 783, 886, 970, 1076, 1374, 1428, 2170, 2263
CaiI	CAGNNNCTG	1 cut(s)	1685
CfoI	GCGC	3 cut(s)	1330, 2168, 2597
Cfr10I	RCCGGY	2 cut(s)	716, 2168
Cfr13I	GGNCC	9 cut(s)	244, 340, 887, 1067, 1141, 1142, 1220, 2193, 2209
Cfr9I	CCCGGG	1 cut(s)	444
ClaI	ATCGAT	1 cut(s)	1193
CseI	GACGC	7 cut(s)	53, 1366, 1610, 2058, 2317, 2416, 3015
Csp6I	GTAC	8 cut(s)	25, 441, 796, 1022, 1707, 1954, 2220, 2479
CspAI	ACCGGT	1 cut(s)	716
CspCI	CAANNNNNGTGG	2 cut(s)	1477, 1512
CviQI	GTAC	8 cut(s)	25, 441, 796, 1022, 1707, 1954, 2220, 2479
DdeI	CTNAG	6 cut(s)	132, 531, 1404, 1509, 1532, 2411
EaeI	YGGCCR	4 cut(s)	1720, 1777, 2161, 2232
EagI	CGGCCG	1 cut(s)	2161
Eam1104I	CTCTTC	3 cut(s)	957, 2011, 2493
EarI	CTCTTC	3 cut(s)	957, 2011, 2493
EciI	GGCGGA	3 cut(s)	1862, 1871, 2519
EclXI	CGGCCG	1 cut(s)	2161
Eco130I	CCWWGG	4 cut(s)	1381, 1491, 2584, 2922
Eco24I	GRGCYC	2 cut(s)	1012, 1145
Eco31I	GGTCTC	2 cut(s)	366, 1021
Eco32I	GATATC	1 cut(s)	1558
Eco47I	GGWCC	6 cut(s)	244, 340, 1067, 1220, 2193, 2209
Eco47III	AGCGCT	1 cut(s)	1329
Eco52I	CGGCCG	1 cut(s)	2161
Eco57I	CTGAAG	2 cut(s)	2907, 3015
Eco88I	CYCGRG	3 cut(s)	444, 1208, 2390
EcoO109I	RGGNCCY	3 cut(s)	1141, 1142, 2193
EcoRV	GATATC	1 cut(s)	1558
EcoT14I	CCWWGG	4 cut(s)	1381, 1491, 2584, 2922
EcoT38I	GRGCYC	2 cut(s)	1012, 1145
ErhI	CCWWGG	4 cut(s)	1381, 1491, 2584, 2922
Esp3I	CGTCTC	4 cut(s)	1996, 2025, 2335, 2399
FauI	CCCGC	2 cut(s)	1626, 2582
FbaI	TGATCA	2 cut(s)	430, 2200
FblI	GTMKAC	3 cut(s)	912, 1910, 2356
FokI	GGATG	6 cut(s)	700, 1001, 1601, 2135, 2531, 2710
FriOI	GRGCYC	2 cut(s)	1012, 1145
FspBI	CTAG	6 cut(s)	525, 669, 777, 969, 1032, 2999
GlaI	GCGC	3 cut(s)	1329, 2167, 2596
GsaI	CCCAGC	3 cut(s)	2219, 2299, 2996
GsuI	CTGGAG	1 cut(s)	1958
HaeII	RGCGCY	1 cut(s)	1331
HaeIII	GGCC	7 cut(s)	888, 1143, 1722, 1779, 2163, 2234, 2921
HgaI	GACGC	7 cut(s)	53, 1366, 1610, 2058, 2317, 2416, 3015
HhaI	GCGC	3 cut(s)	1330, 2168, 2597
Hin1I	GRCGYC	2 cut(s)	2050, 2328
Hin6I	GCGC	3 cut(s)	1328, 2166, 2595
HinP1I	GCGC	3 cut(s)	1328, 2166, 2595
HincII	GTYRAC	1 cut(s)	714
HindII	GTYRAC	1 cut(s)	714
HindIII	AAGCTT	1 cut(s)	2610
HphI	GGTGA	8 cut(s)	1649, 2032, 2113, 2449, 2461, 2539, 2641, 2908
Hpy99I	CGWCG	8 cut(s)	65, 113, 408, 425, 428, 792, 2052, 2309
HpyCH4III	ACNGT	7 cut(s)	440, 831, 881, 1337, 1366, 2044, 2069
HpyCH4IV	ACGT	4 cut(s)	556, 798, 1608, 2453
HpyF3I	CTNAG	6 cut(s)	132, 531, 1404, 1509, 1532, 2411
HpySE526I	ACGT	4 cut(s)	556, 798, 1608, 2453
Hsp92I	GRCGYC	2 cut(s)	2050, 2328
HspAI	GCGC	3 cut(s)	1328, 2166, 2595
KroI	GCCGGC	1 cut(s)	2168
KroNI	GCCGGC	1 cut(s)	2170
Ksp22I	TGATCA	2 cut(s)	430, 2200
LmnI	GCTCC	5 cut(s)	1007, 1947, 2128, 2592, 2989
LweI	GCATC	3 cut(s)	886, 1199, 2539
MaeI	CTAG	6 cut(s)	525, 669, 777, 969, 1032, 2999
MaeII	ACGT	4 cut(s)	556, 798, 1608, 2453
MaeIII	GTNAC	6 cut(s)	552, 1203, 1306, 1516, 2449, 2660
MflI	RGATCY	2 cut(s)	527, 2035
MhlI	GDGCHC	3 cut(s)	537, 1012, 1145
MluCI	AATT	9 cut(s)	657, 932, 993, 1440, 1727, 2310, 2463, 2665, 2984
MlyI	GAGTC	3 cut(s)	443, 757, 1220
MmeI	TCCRAC	3 cut(s)	781, 2071, 2712
MroNI	GCCGGC	1 cut(s)	2168
MroXI	GAANNNNTTC	2 cut(s)	2279, 2951
MseI	TTAA	4 cut(s)	1017, 1341, 1505, 2364
MslI	CAYNNNNRTG	3 cut(s)	102, 2106, 2447
MspA1I	CMGCKG	1 cut(s)	2215
Mva1269I	GAATGC	2 cut(s)	2638, 2761
MvnI	CGCG	5 cut(s)	357, 390, 1621, 2166, 2597
NaeI	GCCGGC	1 cut(s)	2170
NciI	CCSGG	7 cut(s)	248, 344, 445, 446, 1119, 1650, 2638
NcoI	CCATGG	1 cut(s)	2584
NgoMIV	GCCGGC	1 cut(s)	2168
NheI	GCTAGC	1 cut(s)	968
NmuCI	GTSAC	2 cut(s)	552, 2449
NruI	TCGCGA	2 cut(s)	357, 390
NspI	RCATGY	3 cut(s)	703, 785, 2176
NspV	TTCGAA	2 cut(s)	2273, 2770
OliI	CACNNNNGTG	2 cut(s)	102, 2447
PaeI	GCATGC	1 cut(s)	785
PaeR7I	CTCGAG	1 cut(s)	1208
PciI	ACATGT	1 cut(s)	699
PcsI	WCGNNNNNNNCGW	4 cut(s)	105, 117, 1782, 2079
PctI	GAATGC	2 cut(s)	2638, 2761
PdiI	GCCGGC	1 cut(s)	2170
PdmI	GAANNNNTTC	2 cut(s)	2279, 2951
PfeI	GAWTC	8 cut(s)	122, 140, 161, 1864, 2084, 2096, 2270, 2854
Pfl23II	CGTACG	1 cut(s)	1706
PflFI	GACNNNGTC	1 cut(s)	2288
PflMI	CCANNNNNTGG	1 cut(s)	859
PinAI	ACCGGT	1 cut(s)	716
Ple19I	CGATCG	1 cut(s)	361
PleI	GAGTC	3 cut(s)	443, 757, 1219
PpsI	GAGTC	3 cut(s)	443, 757, 1219
PpuMI	RGGWCCY	1 cut(s)	2193
PscI	ACATGT	1 cut(s)	699
PsiI	TTATAA	1 cut(s)	2562
Psp5II	RGGWCCY	1 cut(s)	2193
PspFI	CCCAGC	3 cut(s)	2215, 2295, 2992
PspLI	CGTACG	1 cut(s)	1706
PspOMI	GGGCCC	1 cut(s)	1141
PspPI	GGNCC	9 cut(s)	244, 340, 887, 1067, 1141, 1142, 1220, 2193, 2209
PspPPI	RGGWCCY	1 cut(s)	2193
PspXI	VCTCGAGB	1 cut(s)	1208
PstI	CTGCAG	2 cut(s)	649, 1525
PstNI	CAGNNNCTG	1 cut(s)	1685
PsuI	RGATCY	2 cut(s)	527, 2035
PsyI	GACNNNGTC	1 cut(s)	2288
PvuI	CGATCG	1 cut(s)	361
PvuII	CAGCTG	1 cut(s)	2215
RruI	TCGCGA	2 cut(s)	357, 390
RsaI	GTAC	8 cut(s)	26, 442, 797, 1023, 1708, 1955, 2221, 2480
RsaNI	GTAC	8 cut(s)	25, 441, 796, 1022, 1707, 1954, 2220, 2479
RseI	CAYNNNNRTG	3 cut(s)	102, 2106, 2447
SaqAI	TTAA	4 cut(s)	1017, 1341, 1505, 2364
Sau96I	GGNCC	9 cut(s)	244, 340, 887, 1067, 1141, 1142, 1220, 2193, 2209
SchI	GAGTC	3 cut(s)	443, 757, 1220
SduI	GDGCHC	3 cut(s)	537, 1012, 1145
SfaNI	GCATC	3 cut(s)	886, 1199, 2539
SfcI	CTRYAG	3 cut(s)	645, 1521, 3060
Sfr274I	CTCGAG	1 cut(s)	1208
SfuI	TTCGAA	2 cut(s)	2273, 2770
SinI	GGWCC	6 cut(s)	244, 340, 1067, 1220, 2193, 2209
SlaI	CTCGAG	1 cut(s)	1208
SmaI	CCCGGG	1 cut(s)	446
SmiMI	CAYNNNNRTG	3 cut(s)	102, 2106, 2447
SmlI	CTYRAG	2 cut(s)	1136, 1208
SmoI	CTYRAG	2 cut(s)	1136, 1208
SpeI	ACTAGT	1 cut(s)	668
SphI	GCATGC	1 cut(s)	785
Sse9I	AATT	9 cut(s)	657, 932, 993, 1440, 1727, 2310, 2463, 2665, 2984
SspMI	CTAG	6 cut(s)	525, 669, 777, 969, 1032, 2999
StyI	CCWWGG	4 cut(s)	1381, 1491, 2584, 2922
TaaI	ACNGT	7 cut(s)	440, 831, 881, 1337, 1366, 2044, 2069
TaiI	ACGT	4 cut(s)	559, 801, 1611, 2456
TaqI	TCGA	9 cut(s)	548, 1193, 1209, 1862, 2082, 2273, 2283, 2304, 2770
TaqII	GACCGA	1 cut(s)	1055
TasI	AATT	9 cut(s)	657, 932, 993, 1440, 1727, 2310, 2463, 2665, 2984
TatI	WGTACW	1 cut(s)	2478
TauI	GCSGC	3 cut(s)	1737, 2166, 2558
TfiI	GAWTC	8 cut(s)	122, 140, 161, 1864, 2084, 2096, 2270, 2854
Tru1I	TTAA	4 cut(s)	1017, 1341, 1505, 2364
Tru9I	TTAA	4 cut(s)	1017, 1341, 1505, 2364
TscAI	CASTG	3 cut(s)	886, 1758, 2449
TseFI	GTSAC	2 cut(s)	552, 2449
Tsp45I	GTSAC	2 cut(s)	552, 2449
TspDTI	ATGAA	6 cut(s)	153, 939, 1447, 2080, 2888, 2927
TspGWI	ACGGA	6 cut(s)	23, 51, 421, 475, 1039, 1978
TspMI	CCCGGG	1 cut(s)	444
TspRI	CASTG	3 cut(s)	886, 1758, 2449
Tth111I	GACNNNGTC	1 cut(s)	2288
Van91I	CCANNNNNTGG	1 cut(s)	859
VpaK11BI	GGWCC	6 cut(s)	244, 340, 1067, 1220, 2193, 2209
XapI	RAATTY	4 cut(s)	657, 932, 1727, 2310
XceI	RCATGY	3 cut(s)	703, 785, 2176
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1093
XhoI	CTCGAG	1 cut(s)	1208
XmaI	CCCGGG	1 cut(s)	444
XmiI	GTMKAC	3 cut(s)	912, 1910, 2356
XmnI	GAANNNNTTC	2 cut(s)	2279, 2951
XspI	CTAG	6 cut(s)	525, 669, 777, 969, 1032, 2999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.