pycom02g14470

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0012508
Physical Location & Seq
Reverse (-)
11013975 .. 11015401
1427 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom02g14470.2

Sequence Viewer

Length: 906 bp
ATGTACAAGGCGGTGCTCGAAGACGGAAGCTCGTTGGCGGTTCGGAGGATCGGGGAGCAGAGTGTGGACCGGTTCAAGGATTTCGAGAACCAAATCAAGCTTGTGGCCAAACTGGTCCACCCGAACCTGGTTCGAATTCGTGGGTTCTATTGGGGAGTCGACGAGAAGCTTATCATCTATGATTTCGTTCCAAATGGCAGCCTCGCAAACGCACGTTACAGGAAGGTGGGTTCGTCGCCTTGTCATTTACCGTGGGAAGCGAGGCTCAAGATAGCGAAAGGGGTTGCCCGTGGGCTTGCGTACCTCCACGAAAAGAAGCACGTCCACGGGAACCTCAAGCCGACCAACATTCTCTTGGACACAGACATGGAGCCCCGGATTGGTGATTTTGGACTTGAGAGACTTTTGTCCGGCGACACAAGTTACAAAATTGGAAGCTCGATAAGAAATTTCGGAAGCAAGAGATCAACGGCTTCACGGGATAGCTTTCAGGATTTTGCACTTGGGCCTAGTCCAGGCCCAAGTCCGAGCCCTAGCTCTATGGGTACATCGCCTTATCATTGCCCCGAATCGCTTCGGAGCCTGAAGCCGAACCCAAAGTGGGATGTGTACTCATTTGGGGTGATATTGCTTGAGCTACTAACCGGGAAAGTTGTGGTTGTGGATGAGGCAGTGCAGGGTCTTGGGCTTGTTGGAGTGGATGATAGTGGCAGGGCTTTCCGGATGGCGGATATGGCAATCAGAGGTGAATTGGAGGGCAAAGAGGAGGCCCTGTTGTCCTGCTTCAAGTTGGGGTACAATTGTGCGTCACCTGTCCCACAAAAGAGACCACCAATGAAAGAAGCTCTACAAGTCCTTGAGAAATTCCCATCTTCTGCTTCATCATCATATTATTATGCCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

302

Amino Acids

33.24

Weight (kDa)

9.11

Isoelectric Point (pI)

41.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67280
fragaria_vesca FvH4_1g16750 FvH4_1g16750
malus_domestica MD02G1178600.v1.1 MD15G1288500.v1.1
prunus_persica Prupe.6G229200_v2.0.a1
pyrus_communis pycom02g14470 pycom15g25210
rosa_chinensis RchiOBHm_Chr2g0106651
rosa_laevigata RLG00000017526
rosa_multiflora Rmu_co8446759.1_g000001 Rmu_sc0004352.1_g000001
rosa_roxburghii Rroxscaffold_2G00136920
rosa_rugosa Rorug02G0137100
rosa_samantha Rh2AG188500 Rh2BG199500 Rh2CG193500 Rh2DG194700
rosa_wichuraiana Rw2G014810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 159
AccIII TCCGGA 1 cut(s) 720
AciI CCGC 3 cut(s) 11, 38, 728
AclWI GGATC 1 cut(s) 56
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 3 cut(s) 135, 448, 863
AcuI CTGAAG 1 cut(s) 605
AfaI GTAC 5 cut(s) 5, 302, 547, 611, 797
AfiI CCNNNNNNNGG 6 cut(s) 76, 127, 380, 515, 601, 727
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 2 cut(s) 76, 787
AjiI CACGTC 1 cut(s) 322
AjnI CCWGG 2 cut(s) 126, 514
AloI GAACNNNNNNTCC 2 cut(s) 214, 246
AluBI AGCT 8 cut(s) 30, 100, 169, 438, 486, 537, 637, 845
AluI AGCT 8 cut(s) 30, 100, 169, 438, 486, 537, 637, 845
Alw21I GWGCWC 1 cut(s) 18
Alw26I GTCTC 2 cut(s) 394, 820
AlwI GGATC 1 cut(s) 56
Aor13HI TCCGGA 1 cut(s) 720
AoxI GGCC 4 cut(s) 105, 506, 517, 768
ApeKI GCWGC 1 cut(s) 198
ApoI RAATTY 3 cut(s) 135, 448, 863
AsiGI ACCGGT 1 cut(s) 69
Asp700I GAANNNNTTC 1 cut(s) 573
AspS9I GGNCC 5 cut(s) 67, 115, 506, 518, 769
AsuC2I CCSGG 2 cut(s) 376, 646
AsuHPI GGTGA 4 cut(s) 395, 634, 758, 801
AsuII TTCGAA 1 cut(s) 133
AvaII GGWCC 2 cut(s) 67, 115
BaeI ACNNNNGTAYC 2 cut(s) 787, 820
BalI TGGCCA 1 cut(s) 107
BanII GRGCYC 2 cut(s) 375, 533
BbsI GAAGAC 1 cut(s) 27
Bbv12I GWGCWC 1 cut(s) 18
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 718, 877
BceAI ACGGC 1 cut(s) 486
BciT130I CCWGG 2 cut(s) 128, 516
BcnI CCSGG 2 cut(s) 376, 646
BcoDI GTCTC 2 cut(s) 394, 820
BfaI CTAG 2 cut(s) 510, 534
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
Bme1390I CCNGG 4 cut(s) 128, 376, 516, 646
Bme18I GGWCC 2 cut(s) 67, 115
BmgBI CACGTC 1 cut(s) 322
BmgT120I GGNCC 5 cut(s) 67, 115, 506, 518, 769
BmiI GGNNCC 3 cut(s) 332, 372, 581
BmrFI CCNGG 4 cut(s) 128, 376, 516, 646
BoxI GACNNNNGTC 1 cut(s) 406
BpiI GAAGAC 1 cut(s) 27
Bpu14I TTCGAA 1 cut(s) 133
BpuEI CTTGAG 5 cut(s) 251, 320, 416, 653, 878
BpuMI CCSGG 2 cut(s) 376, 646
BsaI GGTCTC 1 cut(s) 820
BsaJI CCNNGG 4 cut(s) 251, 289, 325, 374
BsaWI WCCGGW 2 cut(s) 69, 720
BsaXI ACNNNNNCTCC 2 cut(s) 758, 788
Bsc4I CCNNNNNNNGG 6 cut(s) 76, 127, 380, 515, 601, 727
Bse118I RCCGGY 1 cut(s) 69
Bse1I ACTGG 1 cut(s) 117
Bse3DI GCAATG 1 cut(s) 559
BseAI TCCGGA 1 cut(s) 720
BseBI CCWGG 2 cut(s) 128, 516
BseDI CCNNGG 4 cut(s) 251, 289, 325, 374
BseGI GGATG 4 cut(s) 610, 670, 706, 729
BseLI CCNNNNNNNGG 6 cut(s) 76, 127, 380, 515, 601, 727
BseMI GCAATG 1 cut(s) 559
BseNI ACTGG 1 cut(s) 117
BseRI GAGGAG 1 cut(s) 779
BseXI GCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 695
BshFI GGCC 4 cut(s) 107, 508, 519, 770
BshTI ACCGGT 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 18
BsiSI CCGG 5 cut(s) 70, 376, 411, 645, 721
BslFI GGGAC 1 cut(s) 800
BslI CCNNNNNNNGG 6 cut(s) 76, 127, 380, 515, 601, 727
BsmAI GTCTC 2 cut(s) 394, 820
BsmFI GGGAC 1 cut(s) 800
BsnI GGCC 4 cut(s) 107, 508, 519, 770
Bso31I GGTCTC 1 cut(s) 820
Bsp119I TTCGAA 1 cut(s) 133
Bsp1286I GDGCHC 3 cut(s) 18, 375, 533
Bsp13I TCCGGA 1 cut(s) 720
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 2 cut(s) 48, 464
BspACI CCGC 3 cut(s) 11, 38, 728
BspANI GGCC 4 cut(s) 107, 508, 519, 770
BspEI TCCGGA 1 cut(s) 720
BspLI GGNNCC 3 cut(s) 332, 372, 581
BspPI GGATC 1 cut(s) 56
BspT104I TTCGAA 1 cut(s) 133
BspTNI GGTCTC 1 cut(s) 820
BsrDI GCAATG 1 cut(s) 559
BsrFI RCCGGY 1 cut(s) 69
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 117
BssAI RCCGGY 1 cut(s) 69
BssECI CCNNGG 4 cut(s) 251, 289, 325, 374
BssMI GATC 2 cut(s) 48, 464
Bst2UI CCWGG 2 cut(s) 128, 516
Bst4CI ACNGT 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 1 cut(s) 133
BstC8I GCNNGC 1 cut(s) 297
BstDSI CCRYGG 3 cut(s) 251, 289, 325
BstENI CCTNNNNNAGG 1 cut(s) 513
BstF5I GGATG 4 cut(s) 610, 670, 706, 729
BstKTI GATC 2 cut(s) 51, 467
BstMAI GTCTC 2 cut(s) 394, 820
BstMBI GATC 2 cut(s) 48, 464
BstMWI GCNNNNNNNGC 1 cut(s) 734
BstNI CCWGG 2 cut(s) 128, 516
BstPAI GACNNNNGTC 1 cut(s) 406
BstSCI CCNGG 4 cut(s) 126, 374, 514, 644
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 27
BsuRI GGCC 4 cut(s) 107, 508, 519, 770
BtgI CCRYGG 3 cut(s) 251, 289, 325
BtgZI GCGATG 1 cut(s) 534
BtrI CACGTC 1 cut(s) 322
BtsCI GGATG 4 cut(s) 610, 670, 706, 729
BtsI GCAGTG 1 cut(s) 678
BtsIMutI CAGTG 1 cut(s) 678
Cac8I GCNNGC 1 cut(s) 297
Cfr10I RCCGGY 1 cut(s) 69
Cfr13I GGNCC 5 cut(s) 67, 115, 506, 518, 769
CseI GACGC 1 cut(s) 795
CsiI ACCWGGT 1 cut(s) 126
Csp6I GTAC 5 cut(s) 4, 301, 546, 610, 796
CspAI ACCGGT 1 cut(s) 69
CviAII CATG 1 cut(s) 367
CviQI GTAC 5 cut(s) 4, 301, 546, 610, 796
DpnI GATC 2 cut(s) 50, 466
DpnII GATC 2 cut(s) 48, 464
EaeI YGGCCR 1 cut(s) 105
EciI GGCGGA 1 cut(s) 743
Eco24I GRGCYC 2 cut(s) 375, 533
Eco31I GGTCTC 1 cut(s) 820
Eco47I GGWCC 2 cut(s) 67, 115
Eco57I CTGAAG 1 cut(s) 605
EcoNI CCTNNNNNAGG 1 cut(s) 513
EcoO109I RGGNCCY 1 cut(s) 769
EcoRI GAATTC 1 cut(s) 135
EcoRII CCWGG 2 cut(s) 126, 514
EcoT38I GRGCYC 2 cut(s) 375, 533
FaeI CATG 1 cut(s) 370
FaiI YATR 6 cut(s) 180, 368, 542, 734, 889, 897
FaqI GGGAC 1 cut(s) 800
FatI CATG 1 cut(s) 366
FblI GTMKAC 1 cut(s) 159
Fnu4HI GCNGC 1 cut(s) 199
FokI GGATG 4 cut(s) 617, 677, 713, 736
FriOI GRGCYC 2 cut(s) 375, 533
Fsp4HI GCNGC 1 cut(s) 199
FspBI CTAG 2 cut(s) 510, 534
GluI GCNGC 1 cut(s) 199
HaeIII GGCC 4 cut(s) 107, 508, 519, 770
HapII CCGG 5 cut(s) 70, 376, 411, 645, 721
HgaI GACGC 1 cut(s) 795
Hin1II CATG 1 cut(s) 370
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HindIII AAGCTT 2 cut(s) 98, 167
HinfI GANTC 2 cut(s) 156, 569
HpaII CCGG 5 cut(s) 70, 376, 411, 645, 721
HphI GGTGA 4 cut(s) 395, 634, 758, 801
Hpy166II GTNNAC 5 cut(s) 67, 118, 160, 325, 610
Hpy188I TCNGA 5 cut(s) 45, 455, 528, 579, 743
Hpy188III TCNNGA 4 cut(s) 85, 268, 491, 721
Hpy8I GTNNAC 5 cut(s) 67, 118, 160, 325, 610
Hpy99I CGWCG 2 cut(s) 164, 238
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 1 cut(s) 252
HpyCH4IV ACGT 2 cut(s) 214, 321
HpyCH4V TGCA 2 cut(s) 500, 676
HpyF10VI GCNNNNNNNGC 1 cut(s) 734
HpySE526I ACGT 2 cut(s) 214, 321
Hsp92II CATG 1 cut(s) 370
Kpn2I TCCGGA 1 cut(s) 720
Kzo9I GATC 2 cut(s) 48, 464
LmnI GCTCC 3 cut(s) 55, 370, 579
Lsp1109I GCAGC 1 cut(s) 210
MabI ACCWGGT 1 cut(s) 126
MaeI CTAG 2 cut(s) 510, 534
MaeII ACGT 2 cut(s) 214, 321
MaeIII GTNAC 3 cut(s) 215, 422, 807
MalI GATC 2 cut(s) 50, 466
MboI GATC 2 cut(s) 48, 464
MboII GAAGA 2 cut(s) 32, 864
MfeI CAATTG 1 cut(s) 799
MhlI GDGCHC 3 cut(s) 18, 375, 533
MlsI TGGCCA 1 cut(s) 107
MluCI AATT 6 cut(s) 135, 429, 448, 749, 799, 863
MluNI TGGCCA 1 cut(s) 107
MlyI GAGTC 1 cut(s) 165
MmeI TCCRAC 1 cut(s) 673
Mox20I TGGCCA 1 cut(s) 107
MroI TCCGGA 1 cut(s) 720
MroXI GAANNNNTTC 1 cut(s) 573
MscI TGGCCA 1 cut(s) 107
MslI CAYNNNNRTG 1 cut(s) 365
Msp20I TGGCCA 1 cut(s) 107
MspI CCGG 5 cut(s) 70, 376, 411, 645, 721
MspR9I CCNGG 4 cut(s) 128, 376, 516, 646
MunI CAATTG 1 cut(s) 799
MvaI CCWGG 2 cut(s) 128, 516
MwoI GCNNNNNNNGC 1 cut(s) 734
NciI CCSGG 2 cut(s) 376, 646
NdeII GATC 2 cut(s) 48, 464
NlaIII CATG 1 cut(s) 370
NlaIV GGNNCC 3 cut(s) 332, 372, 581
NmuCI GTSAC 1 cut(s) 807
NspV TTCGAA 1 cut(s) 133
PdmI GAANNNNTTC 1 cut(s) 573
PfeI GAWTC 1 cut(s) 569
PinAI ACCGGT 1 cut(s) 69
PkrI GCNGC 1 cut(s) 200
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PshAI GACNNNNGTC 1 cut(s) 406
Psp6I CCWGG 2 cut(s) 126, 514
PspGI CCWGG 2 cut(s) 126, 514
PspN4I GGNNCC 3 cut(s) 332, 372, 581
PspPI GGNCC 5 cut(s) 67, 115, 506, 518, 769
RsaI GTAC 5 cut(s) 5, 302, 547, 611, 797
RsaNI GTAC 5 cut(s) 4, 301, 546, 610, 796
RseI CAYNNNNRTG 1 cut(s) 365
SalI GTCGAC 1 cut(s) 158
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 2 cut(s) 48, 464
Sau96I GGNCC 5 cut(s) 67, 115, 506, 518, 769
SchI GAGTC 1 cut(s) 165
ScrFI CCNGG 4 cut(s) 128, 376, 516, 646
SduI GDGCHC 3 cut(s) 18, 375, 533
SexAI ACCWGGT 1 cut(s) 126
SfuI TTCGAA 1 cut(s) 133
SinI GGWCC 2 cut(s) 67, 115
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 5 cut(s) 266, 335, 395, 632, 857
SmoI CTYRAG 5 cut(s) 266, 335, 395, 632, 857
Sse9I AATT 6 cut(s) 135, 429, 448, 749, 799, 863
SsiI CCGC 3 cut(s) 11, 38, 728
SspMI CTAG 2 cut(s) 510, 534
StyD4I CCNGG 4 cut(s) 126, 374, 514, 644
TaaI ACNGT 1 cut(s) 252
TaiI ACGT 2 cut(s) 217, 324
TaqI TCGA 5 cut(s) 18, 84, 133, 159, 440
TasI AATT 6 cut(s) 135, 429, 448, 749, 799, 863
TatI WGTACW 2 cut(s) 3, 609
TfiI GAWTC 1 cut(s) 569
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 1 cut(s) 807
TseI GCWGC 1 cut(s) 198
Tsp45I GTSAC 1 cut(s) 807
TspDTI ATGAA 2 cut(s) 851, 870
TspGWI ACGGA 1 cut(s) 39
TspRI CASTG 1 cut(s) 678
VpaK11BI GGWCC 2 cut(s) 67, 115
XagI CCTNNNNNAGG 1 cut(s) 513
XapI RAATTY 3 cut(s) 135, 448, 863
XcmI CCANNNNNNNNNTGG 1 cut(s) 352
XmiI GTMKAC 1 cut(s) 159
XmnI GAANNNNTTC 1 cut(s) 573
XspI CTAG 2 cut(s) 510, 534
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.