Rmu_co8446759.1_g000001

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8446759.1
OG0012508
Physical Location & Seq
Reverse (-)
2 .. 1529
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8446759.1_g000001.1.cds

Sequence Viewer

Length: 1126 bp
atggtgttcttgtacatgtacagattgaggaagaaaaagaaggagaaggagaagacaacaagcggcgacgtcactacgctgaagaaagaagccaacccagtagtgacggattggtcttcttcttcatcagaatcaagagggttcacgcggtggtcttgcttgagaaacaagaagggcgaaccagacgagcagagctccgattccagcagctcttacagcgaagaagttcaaacggagcagaatggtcagaagggtagtgagagtaaacggcaaacagagcaagaacagagcaaaggtggcacattggtgaccctggacggcgaaaagcagctagagctcgagactctgcttaaagcatcagcttacattttgggtgctactggttctagtataatgtacaaggcggttttggaagacgggagtagtctagcggttcggagaatcggcgagcatagtgtcgaccggttcaaggatttcgagaaccaaatccggctagtagcgaaattggtccacccaaatctggttcgagttcgtgggttcttttggggagttgatgaaaagctcatcatctatgatttcgtcccaaatggcagcctcgccaatgctcgttacaggaaggtgggctcgtcgccttgtcatctaccatgggaagcgaggttgcggatagccaagggggtggcccgtgggctggggtacctccacgagaagaagcacgtccacgggaatctcaagcccaccaacattctcctcggcgctgatatggagcccaaagtcggtgattttggcctcgagaggctcttgtccggtgatacgagctacaaaatagggagctcgactaggaatttcggaagcaagaggtcgacggcttcacgtgatagctttcaagatttcgcgttagggcccagtccgggccctagtccgagccctagctcgatggggacgtcgccctatcatgcgcccgagtcacttcggagcctaaagccccaccccaagtgggatgtgtactcatttggggtcatattgctggagttgataacgggaaaagttgtggttgtggatgagttgggccagggtcttgggctagccgttgatgatccgaaccgcgcttttcggatggcggatatgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

375

Amino Acids

41.49

Weight (kDa)

9.21

Isoelectric Point (pI)

45.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67280
fragaria_vesca FvH4_1g16750 FvH4_1g16750
malus_domestica MD02G1178600.v1.1 MD15G1288500.v1.1
prunus_persica Prupe.6G229200_v2.0.a1
pyrus_communis pycom02g14470 pycom15g25210
rosa_chinensis RchiOBHm_Chr2g0106651
rosa_laevigata RLG00000017526
rosa_multiflora Rmu_co8446759.1_g000001 Rmu_sc0004352.1_g000001
rosa_roxburghii Rroxscaffold_2G00136920
rosa_rugosa Rorug02G0137100
rosa_samantha Rh2AG188500 Rh2BG199500 Rh2CG193500 Rh2DG194700
rosa_wichuraiana Rw2G014810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 112
AatII GACGTC 2 cut(s) 72, 944
Acc65I GGTACC 1 cut(s) 693
AccB1I GGYRCC 1 cut(s) 693
AccI GTMKAC 2 cut(s) 459, 860
AccII CGCG 3 cut(s) 148, 893, 1104
AciI CCGC 7 cut(s) 63, 148, 404, 431, 661, 1102, 1118
AclWI GGATC 1 cut(s) 1088
AcsI RAATTY 1 cut(s) 841
AcuI CTGAAG 1 cut(s) 101
AcvI CACGTG 1 cut(s) 872
AcyI GRCGYC 2 cut(s) 69, 941
AdeI CACNNNGTG 1 cut(s) 150
AfaI GTAC 5 cut(s) 14, 20, 398, 695, 1004
AfiI CCNNNNNNNGG 6 cut(s) 469, 520, 688, 773, 908, 994
AflIII ACRYGT 1 cut(s) 15
AgeI ACCGGT 1 cut(s) 462
AgsI TTSAA 3 cut(s) 230, 469, 884
AjiI CACGTC 1 cut(s) 715
AjnI CCWGG 2 cut(s) 312, 1068
AleI CACNNNNGTG 1 cut(s) 305
Alw21I GWGCWC 3 cut(s) 197, 339, 833
Alw26I GTCTC 1 cut(s) 335
AlwI GGATC 1 cut(s) 1088
Ama87I CYCGRG 3 cut(s) 338, 788, 959
AoxI GGCC 5 cut(s) 678, 784, 899, 910, 1066
ApaI GGGCCC 2 cut(s) 903, 914
ApeKI GCWGC 3 cut(s) 207, 328, 591
ApoI RAATTY 1 cut(s) 841
AsiGI ACCGGT 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 225
Asp718I GGTACC 1 cut(s) 693
AspLEI GCGC 3 cut(s) 755, 958, 1106
AspS9I GGNCC 7 cut(s) 508, 679, 899, 900, 910, 911, 1066
AsuC2I CCSGG 1 cut(s) 909
AsuHPI GGTGA 3 cut(s) 319, 788, 818
AsuNHI GCTAGC 1 cut(s) 1081
AvaI CYCGRG 3 cut(s) 338, 788, 959
AvaII GGWCC 1 cut(s) 508
BaeGI GKGCMC 2 cut(s) 903, 914
BanI GGYRCC 1 cut(s) 693
BanII GRGCYC 8 cut(s) 197, 339, 626, 768, 833, 903, 914, 926
BauI CACGAG 1 cut(s) 701
BbrPI CACGTG 1 cut(s) 872
BbsI GAAGAC 3 cut(s) 59, 108, 420
Bbv12I GWGCWC 3 cut(s) 197, 339, 833
BbvI GCAGC 3 cut(s) 219, 340, 603
BccI CCATC 2 cut(s) 928, 1108
BceAI ACGGC 4 cut(s) 284, 334, 879, 1070
BciT130I CCWGG 2 cut(s) 314, 1070
BcnI CCSGG 1 cut(s) 909
BcoDI GTCTC 1 cut(s) 335
BfaI CTAG 8 cut(s) 332, 387, 428, 494, 837, 915, 927, 1082
BfoI RGCGCY 1 cut(s) 756
BisI GCNGC 4 cut(s) 64, 208, 329, 592
BlsI GCNGC 4 cut(s) 65, 209, 330, 593
Bme1390I CCNGG 3 cut(s) 314, 909, 1070
Bme18I GGWCC 1 cut(s) 508
BmeT110I CYCGRG 3 cut(s) 338, 788, 959
BmgBI CACGTC 1 cut(s) 715
BmgT120I GGNCC 7 cut(s) 508, 679, 899, 900, 910, 911, 1066
BmiI GGNNCC 5 cut(s) 695, 765, 901, 912, 974
BmrFI CCNGG 3 cut(s) 314, 909, 1070
BmrI ACTGGG 2 cut(s) 92, 897
BmsI GCATC 1 cut(s) 365
BmtI GCTAGC 1 cut(s) 1085
BmuI ACTGGG 2 cut(s) 92, 897
BpiI GAAGAC 3 cut(s) 59, 108, 420
BplI GAGNNNNNCTC 2 cut(s) 179, 211
BpmI CTGGAG 1 cut(s) 1046
BpuEI CTTGAG 2 cut(s) 181, 713
BpuMI CCSGG 1 cut(s) 909
BsaAI YACGTR 1 cut(s) 872
BsaHI GRCGYC 2 cut(s) 69, 941
BsaJI CCNNGG 7 cut(s) 312, 644, 669, 682, 718, 748, 1069
BsaWI WCCGGW 2 cut(s) 462, 803
Bsc4I CCNNNNNNNGG 6 cut(s) 469, 520, 688, 773, 908, 994
Bse118I RCCGGY 1 cut(s) 462
Bse1I ACTGG 3 cut(s) 98, 385, 903
BseBI CCWGG 2 cut(s) 314, 1070
BseDI CCNNGG 7 cut(s) 312, 644, 669, 682, 718, 748, 1069
BseGI GGATG 3 cut(s) 1003, 1063, 1119
BseLI CCNNNNNNNGG 6 cut(s) 469, 520, 688, 773, 908, 994
BseNI ACTGG 3 cut(s) 98, 385, 903
BseRI GAGGAG 1 cut(s) 737
BseSI GKGCMC 2 cut(s) 903, 914
BseXI GCAGC 3 cut(s) 219, 340, 603
BseYI CCCAGC 1 cut(s) 688
Bsh1236I CGCG 3 cut(s) 148, 893, 1104
Bsh1285I CGRYCG 1 cut(s) 463
BshFI GGCC 5 cut(s) 680, 786, 901, 912, 1068
BshNI GGYRCC 1 cut(s) 693
BshTI ACCGGT 1 cut(s) 462
BsiEI CGRYCG 1 cut(s) 463
BsiHKAI GWGCWC 3 cut(s) 197, 339, 833
BsiHKCI CYCGRG 3 cut(s) 338, 788, 959
BsiSI CCGG 4 cut(s) 463, 490, 804, 908
BslFI GGGAC 2 cut(s) 566, 952
BslI CCNNNNNNNGG 6 cut(s) 469, 520, 688, 773, 908, 994
BsmAI GTCTC 1 cut(s) 335
BsmFI GGGAC 2 cut(s) 566, 952
BsnI GGCC 5 cut(s) 680, 786, 901, 912, 1068
BsoBI CYCGRG 3 cut(s) 338, 788, 959
Bsp120I GGGCCC 2 cut(s) 899, 910
Bsp1286I GDGCHC 8 cut(s) 197, 339, 626, 768, 833, 903, 914, 926
Bsp1407I TGTACA 3 cut(s) 12, 18, 396
Bsp143I GATC 1 cut(s) 1093
Bsp19I CCATGG 1 cut(s) 644
BspACI CCGC 7 cut(s) 63, 148, 404, 431, 661, 1102, 1118
BspANI GGCC 5 cut(s) 680, 786, 901, 912, 1068
BspFNI CGCG 3 cut(s) 148, 893, 1104
BspLI GGNNCC 5 cut(s) 695, 765, 901, 912, 974
BspOI GCTAGC 1 cut(s) 1085
BspPI GGATC 1 cut(s) 1088
BspT107I GGYRCC 1 cut(s) 693
BsrFI RCCGGY 1 cut(s) 462
BsrGI TGTACA 3 cut(s) 12, 18, 396
BsrI ACTGG 3 cut(s) 98, 385, 903
BssAI RCCGGY 1 cut(s) 462
BssECI CCNNGG 7 cut(s) 312, 644, 669, 682, 718, 748, 1069
BssMI GATC 1 cut(s) 1093
BssNI GRCGYC 2 cut(s) 69, 941
BssSI CACGAG 1 cut(s) 701
BssT1I CCWWGG 2 cut(s) 644, 669
Bst2BI CACGAG 1 cut(s) 701
Bst2UI CCWGG 2 cut(s) 314, 1070
BstACI GRCGYC 2 cut(s) 69, 941
BstAUI TGTACA 3 cut(s) 12, 18, 396
BstBAI YACGTR 1 cut(s) 872
BstC8I GCNNGC 2 cut(s) 449, 1083
BstDSI CCRYGG 3 cut(s) 644, 682, 718
BstEII GGTNACC 1 cut(s) 307
BstF5I GGATG 3 cut(s) 1003, 1063, 1119
BstFNI CGCG 3 cut(s) 148, 893, 1104
BstH2I RGCGCY 1 cut(s) 756
BstHHI GCGC 3 cut(s) 755, 958, 1106
BstKTI GATC 1 cut(s) 1096
BstMAI GTCTC 1 cut(s) 335
BstMBI GATC 1 cut(s) 1093
BstMCI CGRYCG 1 cut(s) 463
BstMWI GCNNNNNNNGC 4 cut(s) 216, 277, 297, 334
BstNI CCWGG 2 cut(s) 314, 1070
BstNSI RCATGY 1 cut(s) 19
BstPI GGTNACC 1 cut(s) 307
BstSCI CCNGG 3 cut(s) 312, 907, 1068
BstSLI GKGCMC 2 cut(s) 903, 914
BstUI CGCG 3 cut(s) 148, 893, 1104
BstV1I GCAGC 3 cut(s) 219, 340, 603
BstV2I GAAGAC 3 cut(s) 59, 108, 420
BstXI CCANNNNNNTGG 2 cut(s) 676, 1076
BsuRI GGCC 5 cut(s) 680, 786, 901, 912, 1068
BtgI CCRYGG 3 cut(s) 644, 682, 718
BtrI CACGTC 1 cut(s) 715
BtsCI GGATG 3 cut(s) 1003, 1063, 1119
Cac8I GCNNGC 2 cut(s) 449, 1083
CfoI GCGC 3 cut(s) 755, 958, 1106
Cfr10I RCCGGY 1 cut(s) 462
Cfr13I GGNCC 7 cut(s) 508, 679, 899, 900, 910, 911, 1066
Csp6I GTAC 5 cut(s) 13, 19, 397, 694, 1003
CspAI ACCGGT 1 cut(s) 462
CviAII CATG 3 cut(s) 16, 645, 953
CviQI GTAC 5 cut(s) 13, 19, 397, 694, 1003
DpnI GATC 1 cut(s) 1095
DpnII GATC 1 cut(s) 1093
DraIII CACNNNGTG 1 cut(s) 150
DrdI GACNNNNNNGTC 1 cut(s) 112
DseDI GACNNNNNNGTC 1 cut(s) 112
Ecl136II GAGCTC 3 cut(s) 195, 337, 831
Eco130I CCWWGG 2 cut(s) 644, 669
Eco24I GRGCYC 8 cut(s) 197, 339, 626, 768, 833, 903, 914, 926
Eco47I GGWCC 1 cut(s) 508
Eco53kI GAGCTC 3 cut(s) 195, 337, 831
Eco57I CTGAAG 1 cut(s) 101
Eco72I CACGTG 1 cut(s) 872
Eco88I CYCGRG 3 cut(s) 338, 788, 959
Eco91I GGTNACC 1 cut(s) 307
EcoICRI GAGCTC 3 cut(s) 195, 337, 831
EcoO109I RGGNCCY 2 cut(s) 899, 911
EcoO65I GGTNACC 1 cut(s) 307
EcoRII CCWGG 2 cut(s) 312, 1068
EcoT14I CCWWGG 2 cut(s) 644, 669
EcoT38I GRGCYC 8 cut(s) 197, 339, 626, 768, 833, 903, 914, 926
ErhI CCWWGG 2 cut(s) 644, 669
FaeI CATG 3 cut(s) 19, 648, 956
FaiI YATR 9 cut(s) 17, 392, 453, 573, 646, 761, 954, 1019, 1124
FaqI GGGAC 2 cut(s) 566, 952
FatI CATG 3 cut(s) 15, 644, 952
FblI GTMKAC 2 cut(s) 459, 860
Fnu4HI GCNGC 4 cut(s) 64, 208, 329, 592
FokI GGATG 2 cut(s) 1010, 1070
FriOI GRGCYC 8 cut(s) 197, 339, 626, 768, 833, 903, 914, 926
Fsp4HI GCNGC 4 cut(s) 64, 208, 329, 592
FspBI CTAG 8 cut(s) 332, 387, 428, 494, 837, 915, 927, 1082
GlaI GCGC 3 cut(s) 754, 957, 1105
GluI GCNGC 4 cut(s) 64, 208, 329, 592
GsaI CCCAGC 1 cut(s) 692
GsuI CTGGAG 1 cut(s) 1046
HaeII RGCGCY 1 cut(s) 756
HaeIII GGCC 5 cut(s) 680, 786, 901, 912, 1068
HapII CCGG 4 cut(s) 463, 490, 804, 908
HhaI GCGC 3 cut(s) 755, 958, 1106
Hin1I GRCGYC 2 cut(s) 69, 941
Hin1II CATG 3 cut(s) 19, 648, 956
Hin6I GCGC 3 cut(s) 753, 956, 1104
HinP1I GCGC 3 cut(s) 753, 956, 1104
HincII GTYRAC 2 cut(s) 460, 861
HindII GTYRAC 2 cut(s) 460, 861
HinfI GANTC 6 cut(s) 131, 200, 343, 441, 724, 962
HpaII CCGG 4 cut(s) 463, 490, 804, 908
HphI GGTGA 3 cut(s) 319, 788, 818
Hpy166II GTNNAC 7 cut(s) 144, 266, 460, 511, 718, 861, 1003
Hpy188I TCNGA 9 cut(s) 130, 199, 249, 438, 848, 921, 972, 1098, 1113
Hpy188III TCNNGA 5 cut(s) 135, 340, 478, 790, 884
Hpy8I GTNNAC 7 cut(s) 144, 266, 460, 511, 718, 861, 1003
Hpy99I CGWCG 4 cut(s) 71, 631, 865, 946
HpyAV CCTTC 5 cut(s) 34, 40, 166, 244, 610
HpyCH4IV ACGT 4 cut(s) 69, 714, 871, 941
HpyF10VI GCNNNNNNNGC 4 cut(s) 216, 277, 297, 334
HpySE526I ACGT 4 cut(s) 69, 714, 871, 941
Hsp92I GRCGYC 2 cut(s) 69, 941
Hsp92II CATG 3 cut(s) 19, 648, 956
HspAI GCGC 3 cut(s) 753, 956, 1104
KpnI GGTACC 1 cut(s) 697
Kzo9I GATC 1 cut(s) 1093
LmnI GCTCC 5 cut(s) 200, 235, 763, 828, 972
Lsp1109I GCAGC 3 cut(s) 219, 340, 603
LweI GCATC 1 cut(s) 365
MaeI CTAG 8 cut(s) 332, 387, 428, 494, 837, 915, 927, 1082
MaeII ACGT 4 cut(s) 69, 714, 871, 941
MaeIII GTNAC 5 cut(s) 70, 103, 307, 608, 963
MalI GATC 1 cut(s) 1095
MboI GATC 1 cut(s) 1093
MboII GAAGA 9 cut(s) 43, 64, 94, 108, 111, 114, 233, 425, 718
MhlI GDGCHC 8 cut(s) 197, 339, 626, 768, 833, 903, 914, 926
MluCI AATT 2 cut(s) 503, 841
MlyI GAGTC 2 cut(s) 337, 971
MnlI CCTC 9 cut(s) 21, 131, 605, 648, 707, 758, 786, 797, 849
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 351
MslI CAYNNNNRTG 1 cut(s) 305
MspI CCGG 4 cut(s) 463, 490, 804, 908
MspR9I CCNGG 3 cut(s) 314, 909, 1070
MvaI CCWGG 2 cut(s) 314, 1070
MvnI CGCG 3 cut(s) 148, 893, 1104
MwoI GCNNNNNNNGC 4 cut(s) 216, 277, 297, 334
NciI CCSGG 1 cut(s) 909
NcoI CCATGG 1 cut(s) 644
NdeII GATC 1 cut(s) 1093
NheI GCTAGC 1 cut(s) 1081
NlaIII CATG 3 cut(s) 19, 648, 956
NlaIV GGNNCC 5 cut(s) 695, 765, 901, 912, 974
NmeAIII GCCGAG 1 cut(s) 729
NmuCI GTSAC 4 cut(s) 70, 103, 307, 963
NspI RCATGY 1 cut(s) 19
OliI CACNNNNGTG 1 cut(s) 305
PaeR7I CTCGAG 2 cut(s) 338, 788
PciI ACATGT 1 cut(s) 15
PcsI WCGNNNNNNNCGW 1 cut(s) 938
PdmI GAANNNNTTC 1 cut(s) 225
PfeI GAWTC 4 cut(s) 131, 200, 441, 724
PinAI ACCGGT 1 cut(s) 462
PkrI GCNGC 4 cut(s) 65, 209, 330, 593
PleI GAGTC 2 cut(s) 337, 970
PmaCI CACGTG 1 cut(s) 872
PmlI CACGTG 1 cut(s) 872
PpsI GAGTC 2 cut(s) 337, 970
Ppu21I YACGTR 1 cut(s) 872
PscI ACATGT 1 cut(s) 15
Psp124BI GAGCTC 3 cut(s) 197, 339, 833
Psp6I CCWGG 2 cut(s) 312, 1068
PspCI CACGTG 1 cut(s) 872
PspEI GGTNACC 1 cut(s) 307
PspFI CCCAGC 1 cut(s) 688
PspGI CCWGG 2 cut(s) 312, 1068
PspN4I GGNNCC 5 cut(s) 695, 765, 901, 912, 974
PspOMI GGGCCC 2 cut(s) 899, 910
PspPI GGNCC 7 cut(s) 508, 679, 899, 900, 910, 911, 1066
RsaI GTAC 5 cut(s) 14, 20, 398, 695, 1004
RsaNI GTAC 5 cut(s) 13, 19, 397, 694, 1003
RseI CAYNNNNRTG 1 cut(s) 305
SacI GAGCTC 3 cut(s) 197, 339, 833
SalI GTCGAC 2 cut(s) 458, 859
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 4 cut(s) 64, 208, 329, 592
Sau3AI GATC 1 cut(s) 1093
Sau96I GGNCC 7 cut(s) 508, 679, 899, 900, 910, 911, 1066
SchI GAGTC 2 cut(s) 337, 971
ScrFI CCNGG 3 cut(s) 314, 909, 1070
SduI GDGCHC 8 cut(s) 197, 339, 626, 768, 833, 903, 914, 926
SfaNI GCATC 1 cut(s) 365
Sfr274I CTCGAG 2 cut(s) 338, 788
SinI GGWCC 1 cut(s) 508
SlaI CTCGAG 2 cut(s) 338, 788
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 4 cut(s) 160, 338, 728, 788
SmoI CTYRAG 4 cut(s) 160, 338, 728, 788
Sse9I AATT 2 cut(s) 503, 841
SsiI CCGC 7 cut(s) 63, 148, 404, 431, 661, 1102, 1118
SspMI CTAG 8 cut(s) 332, 387, 428, 494, 837, 915, 927, 1082
SstI GAGCTC 3 cut(s) 197, 339, 833
StyD4I CCNGG 3 cut(s) 312, 907, 1068
StyI CCWWGG 2 cut(s) 644, 669
TaiI ACGT 4 cut(s) 72, 717, 874, 944
TaqI TCGA 8 cut(s) 339, 459, 477, 526, 789, 833, 860, 932
TasI AATT 2 cut(s) 503, 841
TatI WGTACW 4 cut(s) 12, 18, 396, 1002
TauI GCSGC 1 cut(s) 66
TfiI GAWTC 4 cut(s) 131, 200, 441, 724
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TseFI GTSAC 4 cut(s) 70, 103, 307, 963
TseI GCWGC 3 cut(s) 207, 328, 591
Tsp45I GTSAC 4 cut(s) 70, 103, 307, 963
TspDTI ATGAA 2 cut(s) 114, 570
TspGWI ACGGA 2 cut(s) 122, 248
VpaK11BI GGWCC 1 cut(s) 508
XapI RAATTY 1 cut(s) 841
XceI RCATGY 1 cut(s) 19
XhoI CTCGAG 2 cut(s) 338, 788
XmiI GTMKAC 2 cut(s) 459, 860
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 8 cut(s) 332, 387, 428, 494, 837, 915, 927, 1082
ZraI GACGTC 2 cut(s) 70, 942
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.