Rorug02G0137100

LRR receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0012508
Physical Location & Seq
Forward (+)
12080744 .. 12082492
1749 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0137100.1

Sequence Viewer

Length: 1362 bp
ATGTATCCTCTAAATCTCAAAGACATGCCCACAACAGCATCGTCCATGTTCTCGGCCTATGCCTCCTTCGCCGCATTCATCATGTTGGTCAAGTCCATGGCGGACCAACTCATGTCACTCATCCCCCCTCAACTCCGCTCATACTTGTACTCAATCCTCCTCCACTTCTACACCCCTCACTCCTCTGACCTAACTCTCATCGTGGACGAGAAGTGTGGCTACATGATAAACCAAGTCTATGAATCCGCTGAGGTGTACCTCAAGACCAAGATCAGCCCACTCAACGAGCGTCTTCGAGTGAGCAGAACACCCGGACAGAAAACTCTCAGCATTACCATCGACAGAGACGAAGAAATCGTGGACACATTCAACGACATCACACTGAAGTGGCGTTATGTGTGCACTGAAGCAGAAAAAAGTGGTGACAAGGAAAAGCGTAAATTTGAGCTGACTTTCCAGAAGAAACACAAGACCGAGGTGATGGACTCGTACCTACCCTATGTGTTGGCTCGGGCTGATGCACTTAGACAAGAGGAAAAGGTCCTGAAGCTTACTTCCGAAAATTCGGATAATTCAATAGATCTTGAGCACCCTTCAACTTTCGACACATTGGCTATAGCACCTGAGATCAAGAAAATGATTATCGAAGATTTGGATAGGTTCTTGAGGAGGAAGGAGTTTTATAAGAAGGTTGGCAAGGCTTGGAAAAGAGGGTATTTGCTTTATGGTCCACCTGGTACTGGAAAATCAAGCTTGATTGCAGCCATGGCCAATTATCTCCAGTTTGATATTTATGATGTGGAGCTTTCGAGTGTTTATAGCAACTCGGATTTGAGGTCGATTATGCTGTCTACTTCCAATCGTTCTATTTTAGTCATTGAAGATATTGATTGCACTGTGGAAGCACAAAACCGGGAAGATGAGAGAAGTGAACAATCTGACACCAACTTTACACTCTCGGGACTACTGAACTTCATAGATGGTATGTGGTCAAGCTGCGCTGATGGAAGAATTATTGTGTTCACAACCAACCACAAGGACAAACTAGACCCTGCATTGTTGCGTCCTGGTCGAATGGATGTGCACATTCATATGTCGTATTGCACTGTGAGTGGGTTCAGGATTTTGGCCTCTAACTACCTGGACATTCATGAGAGCAACCCTCATCGCCTCTGCGGAGAAATTGAAGGGTTGATAGAGCGCATTGAGGTGACCCCTGCCGAGATTGATGAGGAGCTAATGAAGAGTGATGTTGCTCTTGAAGGACTTGTCAATTTCCTCAAACGAAAGGAGGTGGAGGTTGCGAGCAATAGTACAAGGGATGAAGGGACTAAAAAAGCTGAAATTGAAGCAACAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

453

Amino Acids

51.72

Weight (kDa)

5.29

Isoelectric Point (pI)

49.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_assoc PF14363 41 - 134 8.1e-23 Domain associated at C-terminal with AAA
AAA PF00004 239 - 366 2.2e-23 ATPase family associated with various cellular activities (AAA)
AAA_lid_At3g28540 PF25568 368 - 432 3.8e-17 At3g28540-like, AAA+ ATPase lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012508)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G67280
fragaria_vesca FvH4_1g16750 FvH4_1g16750
malus_domestica MD02G1178600.v1.1 MD15G1288500.v1.1
prunus_persica Prupe.6G229200_v2.0.a1
pyrus_communis pycom02g14470 pycom15g25210
rosa_chinensis RchiOBHm_Chr2g0106651
rosa_laevigata RLG00000017526
rosa_multiflora Rmu_co8446759.1_g000001 Rmu_sc0004352.1_g000001
rosa_roxburghii Rroxscaffold_2G00136920
rosa_rugosa Rorug02G0137100
rosa_samantha Rh2AG188500 Rh2BG199500 Rh2CG193500 Rh2DG194700
rosa_wichuraiana Rw2G014810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 684
AccBSI CCGCTC 1 cut(s) 138
AccI GTMKAC 1 cut(s) 851
AciI CCGC 5 cut(s) 72, 101, 136, 246, 1176
AcoI YGGCCR 1 cut(s) 768
AcsI RAATTY 2 cut(s) 440, 562
AcuI CTGAAG 3 cut(s) 404, 426, 566
AfaI GTAC 5 cut(s) 149, 257, 491, 739, 1315
AfiI CCNNNNNNNGG 1 cut(s) 740
AgsI TTSAA 7 cut(s) 370, 576, 597, 881, 1187, 1262, 1349
AjnI CCWGG 3 cut(s) 733, 1066, 1140
AleI CACNNNNGTG 1 cut(s) 385
AluBI AGCT 7 cut(s) 448, 550, 753, 805, 996, 1237, 1340
AluI AGCT 7 cut(s) 448, 550, 753, 805, 996, 1237, 1340
Alw21I GWGCWC 3 cut(s) 404, 591, 1086
Alw26I GTCTC 1 cut(s) 339
Alw44I GTGCAC 2 cut(s) 400, 1082
Ama87I CYCGRG 2 cut(s) 510, 958
AoxI GGCC 3 cut(s) 54, 768, 1128
ApaLI GTGCAC 2 cut(s) 400, 1082
ApeKI GCWGC 2 cut(s) 761, 996
ApoI RAATTY 2 cut(s) 440, 562
AspLEI GCGC 2 cut(s) 1001, 1203
AspS9I GGNCC 3 cut(s) 103, 541, 728
AsuC2I CCSGG 2 cut(s) 312, 914
AsuHPI GGTGA 3 cut(s) 434, 490, 1222
AvaI CYCGRG 2 cut(s) 510, 958
AvaII GGWCC 3 cut(s) 103, 541, 728
BaeGI GKGCMC 2 cut(s) 404, 1086
BalI TGGCCA 1 cut(s) 770
BarI GAAGNNNNNNTAC 2 cut(s) 203, 235
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 3 cut(s) 404, 591, 1086
BbvCI CCTCAGC 1 cut(s) 249
BbvI GCAGC 2 cut(s) 773, 983
BccI CCATC 4 cut(s) 344, 475, 974, 998
BcgI CGANNNNNNTGC 2 cut(s) 319, 353
BciT130I CCWGG 3 cut(s) 735, 1068, 1142
BciVI GTATCC 1 cut(s) 15
BcnI CCSGG 2 cut(s) 312, 914
BcoDI GTCTC 1 cut(s) 339
BfaI CTAG 1 cut(s) 1046
BfmI CTRYAG 1 cut(s) 615
BfuI GTATCC 1 cut(s) 15
BglII AGATCT 1 cut(s) 580
BisI GCNGC 3 cut(s) 72, 762, 997
BlsI GCNGC 3 cut(s) 73, 763, 998
Bme1390I CCNGG 5 cut(s) 312, 735, 914, 1068, 1142
Bme18I GGWCC 3 cut(s) 103, 541, 728
BmeT110I CYCGRG 2 cut(s) 510, 958
BmgT120I GGNCC 3 cut(s) 103, 541, 728
BmrFI CCNGG 5 cut(s) 312, 735, 914, 1068, 1142
BmsI GCATC 2 cut(s) 47, 508
BpiI GAAGAC 1 cut(s) 284
BplI GAGNNNNNCTC 2 cut(s) 1147, 1179
BpmI CTGGAG 1 cut(s) 764
Bpu10I CCTNAGC 1 cut(s) 249
BpuEI CTTGAG 3 cut(s) 245, 605, 685
BpuMI CCSGG 2 cut(s) 312, 914
BsaJI CCNNGG 3 cut(s) 96, 474, 765
Bsc4I CCNNNNNNNGG 1 cut(s) 740
Bse1I ACTGG 2 cut(s) 745, 781
BseBI CCWGG 3 cut(s) 735, 1068, 1142
BseDI CCNNGG 3 cut(s) 96, 474, 765
BseGI GGATG 3 cut(s) 120, 1084, 1327
BseLI CCNNNNNNNGG 1 cut(s) 740
BseMII CTCAG 3 cut(s) 240, 340, 615
BseNI ACTGG 2 cut(s) 745, 781
BseRI GAGGAG 4 cut(s) 149, 172, 682, 1247
BseSI GKGCMC 2 cut(s) 404, 1086
BseXI GCAGC 2 cut(s) 773, 983
BshFI GGCC 3 cut(s) 56, 770, 1130
BsiHKAI GWGCWC 3 cut(s) 404, 591, 1086
BsiHKCI CYCGRG 2 cut(s) 510, 958
BsiSI CCGG 2 cut(s) 312, 913
BslFI GGGAC 2 cut(s) 975, 1342
BslI CCNNNNNNNGG 1 cut(s) 740
BsmAI GTCTC 1 cut(s) 339
BsmBI CGTCTC 1 cut(s) 339
BsmFI GGGAC 2 cut(s) 975, 1342
BsmI GAATGC 1 cut(s) 74
BsnI GGCC 3 cut(s) 56, 770, 1130
BsoBI CYCGRG 2 cut(s) 510, 958
Bsp1286I GDGCHC 3 cut(s) 404, 591, 1086
Bsp143I GATC 3 cut(s) 270, 580, 627
Bsp19I CCATGG 2 cut(s) 96, 765
BspACI CCGC 5 cut(s) 72, 101, 136, 246, 1176
BspANI GGCC 3 cut(s) 56, 770, 1130
BspCNI CTCAG 3 cut(s) 241, 339, 616
BspHI TCATGA 1 cut(s) 1150
BsrBI CCGCTC 1 cut(s) 138
BsrI ACTGG 2 cut(s) 745, 781
BssECI CCNNGG 3 cut(s) 96, 474, 765
BssMI GATC 3 cut(s) 270, 580, 627
BssT1I CCWWGG 2 cut(s) 96, 765
Bst2UI CCWGG 3 cut(s) 735, 1068, 1142
Bst4CI ACNGT 2 cut(s) 898, 1108
Bst6I CTCTTC 1 cut(s) 1238
BstC8I GCNNGC 1 cut(s) 1306
BstDEI CTNAG 4 cut(s) 249, 326, 524, 624
BstDSI CCRYGG 2 cut(s) 96, 765
BstEII GGTNACC 1 cut(s) 1210
BstF5I GGATG 3 cut(s) 120, 1084, 1327
BstHHI GCGC 2 cut(s) 1001, 1203
BstKTI GATC 3 cut(s) 273, 583, 630
BstMAI GTCTC 1 cut(s) 339
BstMBI GATC 3 cut(s) 270, 580, 627
BstMWI GCNNNNNNNGC 2 cut(s) 68, 767
BstNI CCWGG 3 cut(s) 735, 1068, 1142
BstNSI RCATGY 1 cut(s) 28
BstPI GGTNACC 1 cut(s) 1210
BstSCI CCNGG 5 cut(s) 310, 733, 912, 1066, 1140
BstSFI CTRYAG 1 cut(s) 615
BstSLI GKGCMC 2 cut(s) 404, 1086
BstV1I GCAGC 2 cut(s) 773, 983
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 580
BstYI RGATCY 1 cut(s) 580
BsuI GTATCC 1 cut(s) 15
BsuRI GGCC 3 cut(s) 56, 770, 1130
BtgI CCRYGG 2 cut(s) 96, 765
BtgZI GCGATG 1 cut(s) 1151
BtsCI GGATG 3 cut(s) 120, 1084, 1327
BtsIMutI CAGTG 4 cut(s) 380, 402, 894, 1104
Cac8I GCNNGC 1 cut(s) 1306
CciI TCATGA 1 cut(s) 1150
CfoI GCGC 2 cut(s) 1001, 1203
Cfr13I GGNCC 3 cut(s) 103, 541, 728
CseI GACGC 2 cut(s) 278, 1052
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 5 cut(s) 148, 256, 490, 738, 1314
CviAII CATG 8 cut(s) 25, 46, 82, 97, 112, 223, 766, 1151
CviQI GTAC 5 cut(s) 148, 256, 490, 738, 1314
DdeI CTNAG 4 cut(s) 249, 326, 524, 624
DpnI GATC 3 cut(s) 272, 582, 629
DpnII GATC 3 cut(s) 270, 580, 627
EaeI YGGCCR 1 cut(s) 768
Eam1104I CTCTTC 1 cut(s) 1238
EarI CTCTTC 1 cut(s) 1238
EciI GGCGGA 1 cut(s) 116
Eco130I CCWWGG 2 cut(s) 96, 765
Eco47I GGWCC 3 cut(s) 103, 541, 728
Eco57I CTGAAG 3 cut(s) 404, 426, 566
Eco88I CYCGRG 2 cut(s) 510, 958
Eco91I GGTNACC 1 cut(s) 1210
EcoO109I RGGNCCY 1 cut(s) 541
EcoO65I GGTNACC 1 cut(s) 1210
EcoRII CCWGG 3 cut(s) 733, 1066, 1140
EcoT14I CCWWGG 2 cut(s) 96, 765
ErhI CCWWGG 2 cut(s) 96, 765
Esp3I CGTCTC 1 cut(s) 339
FaeI CATG 8 cut(s) 28, 49, 85, 100, 115, 226, 769, 1154
FaqI GGGAC 2 cut(s) 975, 1342
FatI CATG 8 cut(s) 24, 45, 81, 96, 111, 222, 765, 1150
FauNDI CATATG 1 cut(s) 1092
FblI GTMKAC 1 cut(s) 851
Fnu4HI GCNGC 3 cut(s) 72, 762, 997
FokI GGATG 3 cut(s) 107, 1091, 1334
Fsp4HI GCNGC 3 cut(s) 72, 762, 997
FspBI CTAG 1 cut(s) 1046
GlaI GCGC 2 cut(s) 1000, 1202
GluI GCNGC 3 cut(s) 72, 762, 997
GsuI CTGGAG 1 cut(s) 764
HaeIII GGCC 3 cut(s) 56, 770, 1130
HapII CCGG 2 cut(s) 312, 913
HgaI GACGC 2 cut(s) 278, 1052
HhaI GCGC 2 cut(s) 1001, 1203
Hin1II CATG 8 cut(s) 28, 49, 85, 100, 115, 226, 769, 1154
Hin6I GCGC 2 cut(s) 999, 1201
HinP1I GCGC 2 cut(s) 999, 1201
HindIII AAGCTT 2 cut(s) 548, 751
HinfI GANTC 2 cut(s) 242, 485
HpaII CCGG 2 cut(s) 312, 913
HphI GGTGA 3 cut(s) 434, 490, 1222
Hpy166II GTNNAC 9 cut(s) 205, 256, 361, 402, 731, 852, 932, 1023, 1084
Hpy188I TCNGA 5 cut(s) 187, 559, 568, 829, 940
Hpy8I GTNNAC 9 cut(s) 205, 256, 361, 402, 731, 852, 932, 1023, 1084
HpyAV CCTTC 7 cut(s) 76, 603, 667, 682, 1181, 1256, 1319
HpyCH4III ACNGT 2 cut(s) 898, 1108
HpyCH4V TGCA 7 cut(s) 402, 521, 761, 894, 1055, 1084, 1104
HpyF10VI GCNNNNNNNGC 2 cut(s) 68, 767
HpyF3I CTNAG 4 cut(s) 249, 326, 524, 624
Hsp92II CATG 8 cut(s) 28, 49, 85, 100, 115, 226, 769, 1154
HspAI GCGC 2 cut(s) 999, 1201
Kzo9I GATC 3 cut(s) 270, 580, 627
LmnI GCTCC 2 cut(s) 802, 1234
Lsp1109I GCAGC 2 cut(s) 773, 983
LweI GCATC 2 cut(s) 47, 508
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 1 cut(s) 1046
MaeIII GTNAC 3 cut(s) 114, 422, 1210
MalI GATC 3 cut(s) 272, 582, 629
MbiI CCGCTC 1 cut(s) 138
MboI GATC 3 cut(s) 270, 580, 627
MboII GAAGA 8 cut(s) 284, 362, 472, 659, 893, 929, 1020, 1255
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 3 cut(s) 404, 591, 1086
MlsI TGGCCA 1 cut(s) 770
MluCI AATT 9 cut(s) 440, 562, 571, 772, 1011, 1182, 1273, 1344, 1357
MluNI TGGCCA 1 cut(s) 770
MlyI GAGTC 1 cut(s) 479
Mox20I TGGCCA 1 cut(s) 770
MscI TGGCCA 1 cut(s) 770
MseI TTAA 1 cut(s) 1360
MslI CAYNNNNRTG 3 cut(s) 385, 1091, 1208
Msp20I TGGCCA 1 cut(s) 770
MspA1I CMGCKG 1 cut(s) 248
MspI CCGG 2 cut(s) 312, 913
MspR9I CCNGG 5 cut(s) 312, 735, 914, 1068, 1142
Mva1269I GAATGC 1 cut(s) 74
MvaI CCWGG 3 cut(s) 735, 1068, 1142
MwoI GCNNNNNNNGC 2 cut(s) 68, 767
NciI CCSGG 2 cut(s) 312, 914
NcoI CCATGG 2 cut(s) 96, 765
NdeI CATATG 1 cut(s) 1092
NdeII GATC 3 cut(s) 270, 580, 627
NlaIII CATG 8 cut(s) 28, 49, 85, 100, 115, 226, 769, 1154
NmeAIII GCCGAG 2 cut(s) 32, 1246
NmuCI GTSAC 3 cut(s) 114, 422, 1210
NspI RCATGY 1 cut(s) 28
OliI CACNNNNGTG 1 cut(s) 385
PagI TCATGA 1 cut(s) 1150
PcsI WCGNNNNNNNCGW 2 cut(s) 345, 354
PctI GAATGC 1 cut(s) 74
PfeI GAWTC 1 cut(s) 242
PkrI GCNGC 3 cut(s) 73, 763, 998
PleI GAGTC 1 cut(s) 479
PpsI GAGTC 1 cut(s) 479
PpuMI RGGWCCY 1 cut(s) 541
PsiI TTATAA 1 cut(s) 684
Psp5II RGGWCCY 1 cut(s) 541
Psp6I CCWGG 3 cut(s) 733, 1066, 1140
PspEI GGTNACC 1 cut(s) 1210
PspGI CCWGG 3 cut(s) 733, 1066, 1140
PspPI GGNCC 3 cut(s) 103, 541, 728
PspPPI RGGWCCY 1 cut(s) 541
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 5 cut(s) 149, 257, 491, 739, 1315
RsaNI GTAC 5 cut(s) 148, 256, 490, 738, 1314
RseI CAYNNNNRTG 3 cut(s) 385, 1091, 1208
SaqAI TTAA 1 cut(s) 1360
SatI GCNGC 3 cut(s) 72, 762, 997
Sau3AI GATC 3 cut(s) 270, 580, 627
Sau96I GGNCC 3 cut(s) 103, 541, 728
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 5 cut(s) 312, 735, 914, 1068, 1142
SduI GDGCHC 3 cut(s) 404, 591, 1086
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 2 cut(s) 47, 508
SfcI CTRYAG 1 cut(s) 615
SinI GGWCC 3 cut(s) 103, 541, 728
SmiMI CAYNNNNRTG 3 cut(s) 385, 1091, 1208
SmlI CTYRAG 3 cut(s) 260, 584, 664
SmoI CTYRAG 3 cut(s) 260, 584, 664
Sse9I AATT 9 cut(s) 440, 562, 571, 772, 1011, 1182, 1273, 1344, 1357
SsiI CCGC 5 cut(s) 72, 101, 136, 246, 1176
SspMI CTAG 1 cut(s) 1046
StyD4I CCNGG 5 cut(s) 310, 733, 912, 1066, 1140
StyI CCWWGG 2 cut(s) 96, 765
TaaI ACNGT 2 cut(s) 898, 1108
TaqI TCGA 7 cut(s) 295, 339, 603, 645, 809, 839, 1072
TaqII GACCGA 1 cut(s) 488
TasI AATT 9 cut(s) 440, 562, 571, 772, 1011, 1182, 1273, 1344, 1357
TatI WGTACW 2 cut(s) 147, 1313
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 242
Tru1I TTAA 1 cut(s) 1360
Tru9I TTAA 1 cut(s) 1360
TscAI CASTG 4 cut(s) 387, 409, 901, 1111
TseFI GTSAC 3 cut(s) 114, 422, 1210
TseI GCWGC 2 cut(s) 761, 996
Tsp45I GTSAC 3 cut(s) 114, 422, 1210
TspDTI ATGAA 7 cut(s) 67, 255, 964, 1079, 1139, 1256, 1338
TspRI CASTG 4 cut(s) 387, 409, 901, 1111
VneI GTGCAC 2 cut(s) 400, 1082
VpaK11BI GGWCC 3 cut(s) 103, 541, 728
XapI RAATTY 2 cut(s) 440, 562
XceI RCATGY 1 cut(s) 28
XmiI GTMKAC 1 cut(s) 851
XspI CTAG 1 cut(s) 1046
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.