pycom02g14930

Belongs to the glycosyl hydrolase 17 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0009502
Physical Location & Seq
Reverse (-)
11634636 .. 11635983
1348 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1194 bp
ATGTTGAAGAAGAAGATGGTGTTCTTCTTGGCAAGACTCCATTGTTTCTGTACAATCTGGATCGATCTCAGTGAGGTTGCAAGCAGCATTTTAAAGGCAGAAACTTGGCTCAAAACCCACGTCCTTGCTCACTACCCTTCCACCCCCATCACCGCCATTGTCGTCGGCGGCGTTGGCGGCGTCCCTCTTCTTCTCTGCCGGAAAGAGCAAGAACACACTCTCACTCTCATCCTCCCGGCCGTCAAGAACTTGCACCACTCCCTCACACAGTGGGGCCTCCAGGAACACATCAAACTCTCACCCGCCTTCGCTCCTTCTTGTTTCGACGGAAGCTCCGATATCTTTGGGAAATTTGTGAGGCCTGTCCTAGATTTTCTCAAGGGAGCATCTCAAACTGTCTCTCCAACGTTGGTGTCTTCTCACTCCGAAAGGCTTGAAGACTTTATCGGCGTTAGCTTTAACTTTGACGATTATACTGTCCTTCTTGACAACCCCGGAGAGAGAAAACCCAGAGGCAGGAAGCTCTCTGCGGACCCCTTTCCAGCAAGACCGACGCCATTGCCTAAAGTTTTAGAAACCCCACTTCACTCCACTGTTGGTCTCTCTGTTCCCGCCAATGTGGCTAAAAATCCTCATCCTCCACTGCCCCAAACTGCCTCTCCGCCGCTCCAAGTTCCTTCCCCACAACCCCGAAGCGCCGCCTCTCCACCACCACTCCTACTGCCTTCCCCAGAGGCACAAACAGCCTCTCCACCACCACTCCAAATAGCTTCTCCACCAGATACGGGGTTCTCCTCAGCCCCAGAAAACCCTCCTTTTGTTGATGATTCCCCTCCGCCGTCCCCTGCCACATTTCCACCCTGCAGGCCGACACACGTGCCGCCTCCTACCCCAGCCCCTCAGACTGCAGTGCACAACAAGCTGTGGTGTGTGGCCAAGCCGACTGTTCCTTCAGACACTCTGCAGGTGGCAATGGACTACGCCTGCGGAGACGGCGGTGCTGACTGCTCGGAGATCATGCCGGACGGCAACTGCTACAGCCCCGATTCTGTTGTGGCACATGCTTCCTACGCCTTCAACAGCTACTGGCAGAAGAACAAGAAGACCGGAGGGACTTGCAGCTTCGATGGCACTGCAATGTTGATTAACAATGATCCAAGTAAAAAAGCCTCTTCATCTCCCAATTTTGATTAG

Protein Analysis

398

Amino Acids

42.57

Weight (kDa)

6.66

Isoelectric Point (pI)

63.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 308 - 380 2.2e-24 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 955
Acc36I ACCTGC 1 cut(s) 955
AccBSI CCGCTC 1 cut(s) 667
AclI AACGTT 1 cut(s) 407
AclWI GGATC 2 cut(s) 68, 1148
AcoI YGGCCR 2 cut(s) 237, 933
AcsI RAATTY 1 cut(s) 350
AcuI CTGAAG 1 cut(s) 936
AcvI CACGTG 1 cut(s) 877
AcyI GRCGYC 2 cut(s) 180, 554
AdeI CACNNNGTG 1 cut(s) 270
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 2 cut(s) 516, 785
AflIII ACRYGT 1 cut(s) 874
AgsI TTSAA 3 cut(s) 7, 437, 1078
AjiI CACGTC 1 cut(s) 121
AjnI CCWGG 1 cut(s) 279
AluBI AGCT 7 cut(s) 333, 456, 523, 770, 922, 1083, 1122
AluI AGCT 7 cut(s) 333, 456, 523, 770, 922, 1083, 1122
Alw21I GWGCWC 1 cut(s) 915
Alw26I GTCTC 3 cut(s) 403, 605, 984
Alw44I GTGCAC 1 cut(s) 911
AlwI GGATC 2 cut(s) 68, 1148
AlwNI CAGNNNCTG 1 cut(s) 1086
AoxI GGCC 5 cut(s) 237, 274, 359, 866, 933
ApaLI GTGCAC 1 cut(s) 911
ApeKI GCWGC 2 cut(s) 84, 1119
ApoI RAATTY 1 cut(s) 350
ArsI GACNNNNNNTTYG 2 cut(s) 105, 137
AspLEI GCGC 1 cut(s) 698
AspS9I GGNCC 2 cut(s) 274, 532
AsuC2I CCSGG 2 cut(s) 236, 495
AsuHPI GGTGA 2 cut(s) 142, 291
AvaII GGWCC 1 cut(s) 532
BaeGI GKGCMC 1 cut(s) 915
BalI TGGCCA 1 cut(s) 935
BbrPI CACGTG 1 cut(s) 877
BbsI GAAGAC 3 cut(s) 408, 444, 1109
Bbv12I GWGCWC 1 cut(s) 915
BbvCI CCTCAGC 1 cut(s) 796
BbvI GCAGC 2 cut(s) 96, 1131
BccI CCATC 3 cut(s) 10, 155, 1121
BceAI ACGGC 4 cut(s) 224, 823, 1009, 1042
BcgI CGANNNNNNTGC 6 cut(s) 541, 575, 859, 893, 1115, 1149
BciT130I CCWGG 1 cut(s) 281
BcnI CCSGG 2 cut(s) 236, 495
BcoDI GTCTC 3 cut(s) 403, 605, 984
BfaI CTAG 1 cut(s) 368
BfmI CTRYAG 4 cut(s) 862, 906, 962, 1036
BfoI RGCGCY 1 cut(s) 699
BfuAI ACCTGC 1 cut(s) 955
BglI GCCNNNNNGGC 1 cut(s) 620
BisI GCNGC 7 cut(s) 85, 169, 178, 665, 699, 881, 1120
BlsI GCNGC 7 cut(s) 86, 170, 179, 666, 700, 882, 1121
Bme1390I CCNGG 3 cut(s) 236, 281, 495
Bme18I GGWCC 1 cut(s) 532
BmgBI CACGTC 1 cut(s) 121
BmgT120I GGNCC 2 cut(s) 274, 532
BmiI GGNNCC 2 cut(s) 275, 534
BmrFI CCNGG 3 cut(s) 236, 281, 495
BmsI GCATC 1 cut(s) 395
BpiI GAAGAC 3 cut(s) 408, 444, 1109
BpmI CTGGAG 1 cut(s) 263
Bpu10I CCTNAGC 1 cut(s) 796
BpuEI CTTGAG 1 cut(s) 362
BpuMI CCSGG 2 cut(s) 236, 495
Bsa29I ATCGAT 1 cut(s) 63
BsaAI YACGTR 1 cut(s) 877
BsaHI GRCGYC 2 cut(s) 180, 554
BsaI GGTCTC 1 cut(s) 605
BsaJI CCNNGG 1 cut(s) 493
BsaWI WCCGGW 1 cut(s) 1106
Bsc4I CCNNNNNNNGG 2 cut(s) 516, 785
Bse1I ACTGG 1 cut(s) 1091
Bse3DI GCAATG 3 cut(s) 557, 978, 1143
BseBI CCWGG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 493
BseGI GGATG 2 cut(s) 228, 634
BseLI CCNNNNNNNGG 2 cut(s) 516, 785
BseMI GCAATG 3 cut(s) 557, 978, 1143
BseMII CTCAG 3 cut(s) 82, 810, 914
BseNI ACTGG 1 cut(s) 1091
BseRI GAGGAG 1 cut(s) 784
BseSI GKGCMC 1 cut(s) 915
BseX3I CGGCCG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 96, 1131
BseYI CCCAGC 1 cut(s) 892
Bsh1285I CGRYCG 1 cut(s) 240
BshFI GGCC 5 cut(s) 239, 276, 361, 868, 935
BshVI ATCGAT 1 cut(s) 63
BsiEI CGRYCG 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 915
BsiSI CCGG 5 cut(s) 199, 236, 495, 1022, 1107
BslFI GGGAC 3 cut(s) 167, 826, 1126
BslI CCNNNNNNNGG 2 cut(s) 516, 785
BsmAI GTCTC 3 cut(s) 403, 605, 984
BsmBI CGTCTC 1 cut(s) 984
BsmFI GGGAC 3 cut(s) 167, 826, 1126
BsnI GGCC 5 cut(s) 239, 276, 361, 868, 935
Bso31I GGTCTC 1 cut(s) 605
Bsp1286I GDGCHC 1 cut(s) 915
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 4 cut(s) 60, 64, 1014, 1153
BspANI GGCC 5 cut(s) 239, 276, 361, 868, 935
BspCNI CTCAG 3 cut(s) 81, 809, 913
BspDI ATCGAT 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 275, 534
BspMAI CTGCAG 3 cut(s) 866, 910, 966
BspMI ACCTGC 1 cut(s) 955
BspPI GGATC 2 cut(s) 68, 1148
BspTNI GGTCTC 1 cut(s) 605
BsrBI CCGCTC 1 cut(s) 667
BsrDI GCAATG 3 cut(s) 557, 978, 1143
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 1 cut(s) 1091
BssECI CCNNGG 1 cut(s) 493
BssMI GATC 4 cut(s) 60, 64, 1014, 1153
BssNI GRCGYC 2 cut(s) 180, 554
Bst2UI CCWGG 1 cut(s) 281
Bst4CI ACNGT 5 cut(s) 270, 397, 478, 595, 946
Bst6I CTCTTC 2 cut(s) 192, 1177
BstACI GRCGYC 2 cut(s) 180, 554
BstAUI TGTACA 1 cut(s) 50
BstBAI YACGTR 1 cut(s) 877
BstC8I GCNNGC 3 cut(s) 82, 866, 985
BstDEI CTNAG 3 cut(s) 68, 796, 900
BstF5I GGATG 2 cut(s) 228, 634
BstH2I RGCGCY 1 cut(s) 699
BstHHI GCGC 1 cut(s) 698
BstKTI GATC 4 cut(s) 63, 67, 1017, 1156
BstMAI GTCTC 3 cut(s) 403, 605, 984
BstMBI GATC 4 cut(s) 60, 64, 1014, 1153
BstMCI CGRYCG 1 cut(s) 240
BstMWI GCNNNNNNNGC 8 cut(s) 174, 177, 620, 743, 919, 993, 1070, 1128
BstNI CCWGG 1 cut(s) 281
BstNSI RCATGY 1 cut(s) 1064
BstSCI CCNGG 3 cut(s) 234, 279, 493
BstSFI CTRYAG 4 cut(s) 862, 906, 962, 1036
BstSLI GKGCMC 1 cut(s) 915
BstV1I GCAGC 2 cut(s) 96, 1131
BstV2I GAAGAC 3 cut(s) 408, 444, 1109
BstZI CGGCCG 1 cut(s) 237
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 5 cut(s) 239, 276, 361, 868, 935
BsuTUI ATCGAT 1 cut(s) 63
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 228, 634
BtsI GCAGTG 3 cut(s) 641, 915, 1131
BtsIMutI CAGTG 6 cut(s) 76, 275, 591, 641, 915, 1131
BveI ACCTGC 1 cut(s) 955
Cac8I GCNNGC 3 cut(s) 82, 866, 985
CaiI CAGNNNCTG 1 cut(s) 1086
CfoI GCGC 1 cut(s) 698
Cfr13I GGNCC 2 cut(s) 274, 532
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 2 cut(s) 169, 562
Csp6I GTAC 1 cut(s) 51
CviAII CATG 2 cut(s) 1018, 1061
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 3 cut(s) 68, 796, 900
DpnI GATC 4 cut(s) 62, 66, 1016, 1155
DpnII GATC 4 cut(s) 60, 64, 1014, 1153
DraI TTTAAA 1 cut(s) 93
DraIII CACNNNGTG 1 cut(s) 270
EaeI YGGCCR 2 cut(s) 237, 933
EagI CGGCCG 1 cut(s) 237
Eam1104I CTCTTC 2 cut(s) 192, 1177
EarI CTCTTC 2 cut(s) 192, 1177
EciI GGCGGA 2 cut(s) 651, 825
EclXI CGGCCG 1 cut(s) 237
Eco147I AGGCCT 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 605
Eco32I GATATC 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 532
Eco52I CGGCCG 1 cut(s) 237
Eco57I CTGAAG 1 cut(s) 936
Eco72I CACGTG 1 cut(s) 877
EcoO109I RGGNCCY 1 cut(s) 274
EcoRII CCWGG 1 cut(s) 279
EcoRV GATATC 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 984
FaeI CATG 2 cut(s) 1021, 1064
FaiI YATR 3 cut(s) 474, 1019, 1062
FaqI GGGAC 3 cut(s) 167, 826, 1126
FatI CATG 2 cut(s) 1017, 1060
FauI CCCGC 2 cut(s) 310, 619
Fnu4HI GCNGC 7 cut(s) 85, 169, 178, 665, 699, 881, 1120
FokI GGATG 2 cut(s) 215, 621
Fsp4HI GCNGC 7 cut(s) 85, 169, 178, 665, 699, 881, 1120
FspBI CTAG 1 cut(s) 368
GlaI GCGC 1 cut(s) 697
GluI GCNGC 7 cut(s) 85, 169, 178, 665, 699, 881, 1120
GsaI CCCAGC 1 cut(s) 896
GsuI CTGGAG 1 cut(s) 263
HaeII RGCGCY 1 cut(s) 699
HaeIII GGCC 5 cut(s) 239, 276, 361, 868, 935
HapII CCGG 5 cut(s) 199, 236, 495, 1022, 1107
HgaI GACGC 2 cut(s) 169, 562
HhaI GCGC 1 cut(s) 698
Hin1I GRCGYC 2 cut(s) 180, 554
Hin1II CATG 2 cut(s) 1021, 1064
Hin6I GCGC 1 cut(s) 696
HinP1I GCGC 1 cut(s) 696
HinfI GANTC 3 cut(s) 36, 827, 1046
HpaII CCGG 5 cut(s) 199, 236, 495, 1022, 1107
HphI GGTGA 2 cut(s) 142, 291
Hpy166II GTNNAC 1 cut(s) 913
Hpy188I TCNGA 5 cut(s) 337, 427, 903, 955, 1012
Hpy188III TCNNGA 3 cut(s) 58, 244, 485
Hpy8I GTNNAC 1 cut(s) 913
Hpy99I CGWCG 3 cut(s) 167, 329, 556
HpyAV CCTTC 8 cut(s) 147, 316, 324, 491, 687, 735, 960, 1084
HpyCH4III ACNGT 5 cut(s) 270, 397, 478, 595, 946
HpyCH4IV ACGT 3 cut(s) 120, 407, 876
HpyCH4V TGCA 8 cut(s) 80, 253, 864, 908, 913, 964, 1119, 1136
HpyF10VI GCNNNNNNNGC 8 cut(s) 174, 177, 620, 743, 919, 993, 1070, 1128
HpyF3I CTNAG 3 cut(s) 68, 796, 900
HpySE526I ACGT 3 cut(s) 120, 407, 876
Hsp92I GRCGYC 2 cut(s) 180, 554
Hsp92II CATG 2 cut(s) 1021, 1064
HspAI GCGC 1 cut(s) 696
Kzo9I GATC 4 cut(s) 60, 64, 1014, 1153
LmnI GCTCC 4 cut(s) 316, 338, 383, 672
Lsp1109I GCAGC 2 cut(s) 96, 1131
LweI GCATC 1 cut(s) 395
MaeI CTAG 1 cut(s) 368
MaeII ACGT 3 cut(s) 120, 407, 876
MalI GATC 4 cut(s) 62, 66, 1016, 1155
MbiI CCGCTC 1 cut(s) 667
MboI GATC 4 cut(s) 60, 64, 1014, 1153
MhlI GDGCHC 1 cut(s) 915
MlsI TGGCCA 1 cut(s) 935
MluCI AATT 2 cut(s) 350, 1183
MluNI TGGCCA 1 cut(s) 935
MlyI GAGTC 1 cut(s) 30
MmeI TCCRAC 1 cut(s) 428
Mox20I TGGCCA 1 cut(s) 935
MscI TGGCCA 1 cut(s) 935
MseI TTAA 3 cut(s) 92, 459, 1146
MslI CAYNNNNRTG 1 cut(s) 1136
Msp20I TGGCCA 1 cut(s) 935
MspI CCGG 5 cut(s) 199, 236, 495, 1022, 1107
MspR9I CCNGG 3 cut(s) 236, 281, 495
MvaI CCWGG 1 cut(s) 281
MwoI GCNNNNNNNGC 8 cut(s) 174, 177, 620, 743, 919, 993, 1070, 1128
NciI CCSGG 2 cut(s) 236, 495
NdeII GATC 4 cut(s) 60, 64, 1014, 1153
NlaIII CATG 2 cut(s) 1021, 1064
NlaIV GGNNCC 2 cut(s) 275, 534
NspI RCATGY 1 cut(s) 1064
PaqCI CACCTGC 1 cut(s) 955
PceI AGGCCT 1 cut(s) 361
PcsI WCGNNNNNNNCGW 2 cut(s) 168, 333
PfeI GAWTC 2 cut(s) 827, 1046
PfoI TCCNGGA 1 cut(s) 279
PkrI GCNGC 7 cut(s) 86, 170, 179, 666, 700, 882, 1121
PleI GAGTC 1 cut(s) 30
PmaCI CACGTG 1 cut(s) 877
PmlI CACGTG 1 cut(s) 877
PpsI GAGTC 1 cut(s) 30
Ppu21I YACGTR 1 cut(s) 877
Psp1406I AACGTT 1 cut(s) 407
Psp6I CCWGG 1 cut(s) 279
PspCI CACGTG 1 cut(s) 877
PspFI CCCAGC 1 cut(s) 892
PspGI CCWGG 1 cut(s) 279
PspN4I GGNNCC 2 cut(s) 275, 534
PspPI GGNCC 2 cut(s) 274, 532
PstI CTGCAG 3 cut(s) 866, 910, 966
PstNI CAGNNNCTG 1 cut(s) 1086
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
RseI CAYNNNNRTG 1 cut(s) 1136
SaqAI TTAA 3 cut(s) 92, 459, 1146
SatI GCNGC 7 cut(s) 85, 169, 178, 665, 699, 881, 1120
Sau3AI GATC 4 cut(s) 60, 64, 1014, 1153
Sau96I GGNCC 2 cut(s) 274, 532
SbfI CCTGCAGG 1 cut(s) 866
SchI GAGTC 1 cut(s) 30
ScrFI CCNGG 3 cut(s) 236, 281, 495
SdaI CCTGCAGG 1 cut(s) 866
SduI GDGCHC 1 cut(s) 915
SfaNI GCATC 1 cut(s) 395
SfcI CTRYAG 4 cut(s) 862, 906, 962, 1036
SinI GGWCC 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 1136
SmlI CTYRAG 1 cut(s) 377
SmoI CTYRAG 1 cut(s) 377
Sse8387I CCTGCAGG 1 cut(s) 866
Sse9I AATT 2 cut(s) 350, 1183
SseBI AGGCCT 1 cut(s) 361
SspMI CTAG 1 cut(s) 368
StuI AGGCCT 1 cut(s) 361
StyD4I CCNGG 3 cut(s) 234, 279, 493
TaaI ACNGT 5 cut(s) 270, 397, 478, 595, 946
TaiI ACGT 3 cut(s) 123, 410, 879
TaqI TCGA 3 cut(s) 63, 324, 1125
TaqII GACCGA 1 cut(s) 565
TasI AATT 2 cut(s) 350, 1183
TatI WGTACW 1 cut(s) 50
TauI GCSGC 5 cut(s) 171, 180, 667, 701, 883
TfiI GAWTC 2 cut(s) 827, 1046
Tru1I TTAA 3 cut(s) 92, 459, 1146
Tru9I TTAA 3 cut(s) 92, 459, 1146
TscAI CASTG 6 cut(s) 76, 275, 598, 648, 915, 1138
TseI GCWGC 2 cut(s) 84, 1119
TspDTI ATGAA 1 cut(s) 1164
TspGWI ACGGA 1 cut(s) 342
TspRI CASTG 6 cut(s) 76, 275, 598, 648, 915, 1138
VneI GTGCAC 1 cut(s) 911
VpaK11BI GGWCC 1 cut(s) 532
XapI RAATTY 1 cut(s) 350
XceI RCATGY 1 cut(s) 1064
XspI CTAG 1 cut(s) 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.