Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0004684

Physical Location & Seq

Genomic Coordinates Reverse (-)

14079299 .. 14081165

Gene Structure 1867 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGCCCAAGTGAGCAAAATCTGCAGCAATGGAGCTCAAAGCATCAATCTTTTGCCCAATGTTTCCAAACCCCAAATGCCCAGATCATCAAATTTTCTCCCATTGAAGTCCCAGTTTCTGGGTTCCTCAAATTCTTTGAGTTTGAAGCTGAAAAATGGGTTTGTGGGCAGTTGGACCGTCGGTAAAGTCAGGGTCGATCCGCTTACAGTTGCAGCTTCAGTTGCCACAGCAGAGAAGCCGTCCACGGTTCCGGAGATTGTGCTGCAACCCATCCAAGAAATCTCGGGCACCATAAAGTTGCCGGGTTCCAAGTCGTTGTCGAATCGAATTCTGCTGATTGCTGCTCTCTCTGAGGGAACAACTGTTGTTGACAACTTGTTAGATAGTGAAGATATTCATTATATGCTTGGTGCGTTGAAAACCCTTGGGCTGAATGTTGAAGAGGACAAGGAAAACAGGCGAGCAGTCGTGGAGGGTTGTGGTGGTCGGTTTCCTTTGAGTAATGAATCCGTAGATGAAGTGCAACTATTCCTTGGAAATGCTGGAACAGCAATGCGGCCATTGACTGCTGCAGTTGTTGCTGCTGGTGGACATGCTAGGTATGTACTTGATGGGGTGCCCCGAATGAGGGAGAGACCAATCGGAGACTTAGTTGATGGTCTTAAGCAGCTTGGTGTGGATGCTGATTGTTTTCTTGGAACAAACTGCCCTCCTGTCCGTGTGATTGGAAAGGGAGGCCTTCCAGGGGGGAAGGTGAAGCTCTCTGGATCAATTAGTAGTCAGTACTTGACTGCTTTGCTTATGGCAGCTCCTTTGGCCCTTCAAGATGTTGAAATAGAGATTATTGATAAACTAATTTCCATTCCGTATGTGGAAATGACTTTGAAGTTGATGGAACGCTTTGGGGTCTCAGTGGAACACAGTGATAGTTGGGATCGGTTTTTAGATCGATCCGAGGAGGTCAAAAGTACAAGTCTCCTGGAAATGCTTTTGTTGAAGGCGATGCTTCAAGTGCTAGTTACTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003866 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009423 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016765 GO:0019752 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043648 GO:0043650 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046417 GO:0071704 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00400 ko01100 ko01110 ko01130 ko01230 map00400 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

EPSP_synthase

Protein Analysis

343

Amino Acids

36.65

Weight (kDa)

6.03

Isoelectric Point (pI)

33.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EPSP_synthase	PF00275	89 - 314	1.7e-63	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004684)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48860 AT1G48860 AT2G45300 AT2G45300 AT2G45300 AT2G45300
fragaria_vesca	FvH4_7g11530 FvH4_7g11530
malus_domestica	MD02G1207300.v1.1 MD02G1207500.v1.1 MD07G1119600.v1.1 MD10G1038600.v1.1 MD14G1236200.v1.1
prunus_persica	Prupe.2G143700_v2.0.a1
pyrus_communis	pycom02g16870 pycom04g13590 pycom06g15290 pycom07g10510
rosa_chinensis	RchiOBHm_Chr1g0349971
rosa_laevigata	RLG00000028512
rosa_multiflora	Rmu_sc0000778.1_g000001 Rmu_sc0005220.1_g000012 Rmu_sc0039385.1_g000001
rosa_roxburghii	Rroxscaffold_4G00305240
rosa_rugosa	Rorug01G0207400 Rorug01G0207500
rosa_samantha	Rh1AG224000 Rh1BG191200 Rh1CG208700 Rh1DG219800
rosa_wichuraiana	Rw0G007590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	287, 616
AccB7I	CCANNNNNTGG	1 cut(s)	118
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	2 cut(s)	200, 556
AclWI	GGATC	4 cut(s)	191, 775, 942, 945
AcoI	YGGCCR	1 cut(s)	557
AcsI	RAATTY	3 cut(s)	91, 130, 327
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	3 cut(s)	606, 785, 970
AfiI	CCNNNNNNNGG	4 cut(s)	118, 627, 628, 745
AflII	CTTAAG	1 cut(s)	662
AgsI	TTSAA	9 cut(s)	106, 145, 418, 440, 824, 833, 886, 997, 1010
AjnI	CCWGG	2 cut(s)	742, 978
AluBI	AGCT	6 cut(s)	35, 148, 215, 670, 760, 809
AluI	AGCT	6 cut(s)	35, 148, 215, 670, 760, 809
Alw21I	GWGCWC	1 cut(s)	37
Alw26I	GTCTC	4 cut(s)	628, 639, 913, 980
AlwI	GGATC	4 cut(s)	191, 775, 942, 945
AlwNI	CAGNNNCTG	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	283
Aor13HI	TCCGGA	1 cut(s)	250
AoxI	GGCC	4 cut(s)	3, 557, 736, 816
ApeKI	GCWGC	8 cut(s)	24, 212, 262, 341, 569, 581, 667, 806
ApoI	RAATTY	3 cut(s)	91, 130, 327
Asp700I	GAANNNNTTC	1 cut(s)	393
AspS9I	GGNCC	3 cut(s)	4, 174, 817
AsuC2I	CCSGG	1 cut(s)	303
AsuHPI	GGTGA	1 cut(s)	766
AvaI	CYCGRG	1 cut(s)	283
AvaII	GGWCC	1 cut(s)	174
BaeGI	GKGCMC	2 cut(s)	290, 621
BanI	GGYRCC	2 cut(s)	287, 616
BanII	GRGCYC	1 cut(s)	37
Bbv12I	GWGCWC	1 cut(s)	37
BbvI	GCAGC	8 cut(s)	36, 224, 249, 328, 556, 568, 679, 818
BccI	CCATC	4 cut(s)	278, 605, 650, 886
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	2 cut(s)	744, 980
BcnI	CCSGG	1 cut(s)	303
BcoDI	GTCTC	4 cut(s)	628, 639, 913, 980
BfaI	CTAG	3 cut(s)	597, 1016, 1027
BfmI	CTRYAG	2 cut(s)	22, 570
BfrI	CTTAAG	1 cut(s)	662
BisI	GCNGC	9 cut(s)	25, 213, 263, 342, 557, 570, 582, 668, 807
BlsI	GCNGC	9 cut(s)	26, 214, 264, 343, 558, 571, 583, 669, 808
BmcAI	AGTACT	1 cut(s)	785
Bme1390I	CCNGG	3 cut(s)	303, 744, 980
Bme18I	GGWCC	1 cut(s)	174
BmeT110I	CYCGRG	1 cut(s)	283
BmgT120I	GGNCC	3 cut(s)	4, 174, 817
BmiI	GGNNCC	5 cut(s)	124, 249, 289, 307, 618
BmrFI	CCNGG	3 cut(s)	303, 744, 980
BmrI	ACTGGG	1 cut(s)	106
BmsI	GCATC	3 cut(s)	51, 670, 993
BmuI	ACTGGG	1 cut(s)	106
BpuMI	CCSGG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	949
BsaI	GGTCTC	2 cut(s)	628, 913
BsaJI	CCNNGG	5 cut(s)	243, 424, 532, 743, 954
BsaWI	WCCGGW	1 cut(s)	250
BsaXI	ACNNNNNCTCC	2 cut(s)	636, 666
Bsc4I	CCNNNNNNNGG	4 cut(s)	118, 627, 628, 745
Bse1I	ACTGG	1 cut(s)	112
Bse3DI	GCAATG	2 cut(s)	34, 558
BseAI	TCCGGA	1 cut(s)	250
BseBI	CCWGG	2 cut(s)	744, 980
BseCI	ATCGAT	1 cut(s)	949
BseDI	CCNNGG	5 cut(s)	243, 424, 532, 743, 954
BseGI	GGATG	2 cut(s)	270, 685
BseLI	CCNNNNNNNGG	4 cut(s)	118, 627, 628, 745
BseMI	GCAATG	2 cut(s)	34, 558
BseMII	CTCAG	2 cut(s)	342, 924
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	971
BseSI	GKGCMC	2 cut(s)	290, 621
BseXI	GCAGC	8 cut(s)	36, 224, 249, 328, 556, 568, 679, 818
BshFI	GGCC	4 cut(s)	5, 559, 738, 818
BshNI	GGYRCC	2 cut(s)	287, 616
BshVI	ATCGAT	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	283
BsiSI	CCGG	2 cut(s)	251, 302
BslFI	GGGAC	1 cut(s)	94
BslI	CCNNNNNNNGG	4 cut(s)	118, 627, 628, 745
BsmAI	GTCTC	4 cut(s)	628, 639, 913, 980
BsmFI	GGGAC	1 cut(s)	94
BsnI	GGCC	4 cut(s)	5, 559, 738, 818
Bso31I	GGTCTC	2 cut(s)	628, 913
BsoBI	CYCGRG	1 cut(s)	283
Bsp1286I	GDGCHC	3 cut(s)	37, 290, 621
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	6 cut(s)	83, 196, 767, 934, 946, 950
BspACI	CCGC	2 cut(s)	200, 556
BspANI	GGCC	4 cut(s)	5, 559, 738, 818
BspCNI	CTCAG	2 cut(s)	343, 923
BspDI	ATCGAT	1 cut(s)	949
BspEI	TCCGGA	1 cut(s)	250
BspLI	GGNNCC	5 cut(s)	124, 249, 289, 307, 618
BspMAI	CTGCAG	2 cut(s)	26, 574
BspPI	GGATC	4 cut(s)	191, 775, 942, 945
BspT107I	GGYRCC	2 cut(s)	287, 616
BspTI	CTTAAG	1 cut(s)	662
BspTNI	GGTCTC	2 cut(s)	628, 913
BsrDI	GCAATG	2 cut(s)	34, 558
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	5 cut(s)	243, 424, 532, 743, 954
BssMI	GATC	6 cut(s)	83, 196, 767, 934, 946, 950
BssT1I	CCWWGG	2 cut(s)	424, 532
Bst2UI	CCWGG	2 cut(s)	744, 980
Bst4CI	ACNGT	5 cut(s)	178, 208, 247, 364, 923
Bst6I	CTCTTC	1 cut(s)	435
BstAFI	CTTAAG	1 cut(s)	662
BstAPI	GCANNNNNTGC	2 cut(s)	21, 578
BstC8I	GCNNGC	1 cut(s)	462
BstDEI	CTNAG	3 cut(s)	351, 649, 910
BstDSI	CCRYGG	1 cut(s)	243
BstF5I	GGATG	2 cut(s)	270, 685
BstKTI	GATC	6 cut(s)	86, 199, 770, 937, 949, 953
BstMAI	GTCTC	4 cut(s)	628, 639, 913, 980
BstMBI	GATC	6 cut(s)	83, 196, 767, 934, 946, 950
BstMWI	GCNNNNNNNGC	6 cut(s)	21, 221, 548, 578, 815, 1012
BstNI	CCWGG	2 cut(s)	744, 980
BstNSI	RCATGY	1 cut(s)	596
BstSCI	CCNGG	3 cut(s)	301, 742, 978
BstSFI	CTRYAG	2 cut(s)	22, 570
BstSLI	GKGCMC	2 cut(s)	290, 621
BstV1I	GCAGC	8 cut(s)	36, 224, 249, 328, 556, 568, 679, 818
Bsu15I	ATCGAT	1 cut(s)	949
BsuRI	GGCC	4 cut(s)	5, 559, 738, 818
BsuTUI	ATCGAT	1 cut(s)	949
BtgI	CCRYGG	1 cut(s)	243
BtgZI	GCGATG	1 cut(s)	1016
BtsCI	GGATG	2 cut(s)	270, 685
BtsIMutI	CAGTG	2 cut(s)	918, 928
Cac8I	GCNNGC	1 cut(s)	462
CaiI	CAGNNNCTG	1 cut(s)	118
Cfr13I	GGNCC	3 cut(s)	4, 174, 817
ClaI	ATCGAT	1 cut(s)	949
Csp6I	GTAC	3 cut(s)	605, 784, 969
CviAII	CATG	1 cut(s)	593
CviQI	GTAC	3 cut(s)	605, 784, 969
DdeI	CTNAG	3 cut(s)	351, 649, 910
DpnI	GATC	6 cut(s)	85, 198, 769, 936, 948, 952
DpnII	GATC	6 cut(s)	83, 196, 767, 934, 946, 950
EaeI	YGGCCR	1 cut(s)	557
Eam1104I	CTCTTC	1 cut(s)	435
EarI	CTCTTC	1 cut(s)	435
Ecl136II	GAGCTC	1 cut(s)	35
Eco130I	CCWWGG	2 cut(s)	424, 532
Eco147I	AGGCCT	1 cut(s)	738
Eco24I	GRGCYC	1 cut(s)	37
Eco31I	GGTCTC	2 cut(s)	628, 913
Eco47I	GGWCC	1 cut(s)	174
Eco53kI	GAGCTC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	201
Eco88I	CYCGRG	1 cut(s)	283
EcoICRI	GAGCTC	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	327
EcoRII	CCWGG	2 cut(s)	742, 978
EcoT14I	CCWWGG	2 cut(s)	424, 532
EcoT38I	GRGCYC	1 cut(s)	37
ErhI	CCWWGG	2 cut(s)	424, 532
FaeI	CATG	1 cut(s)	596
FaiI	YATR	7 cut(s)	293, 402, 404, 594, 603, 803, 870
FaqI	GGGAC	1 cut(s)	94
FatI	CATG	1 cut(s)	592
Fnu4HI	GCNGC	9 cut(s)	25, 213, 263, 342, 557, 570, 582, 668, 807
FokI	GGATG	2 cut(s)	257, 692
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	9 cut(s)	25, 213, 263, 342, 557, 570, 582, 668, 807
FspBI	CTAG	3 cut(s)	597, 1016, 1027
GluI	GCNGC	9 cut(s)	25, 213, 263, 342, 557, 570, 582, 668, 807
HaeIII	GGCC	4 cut(s)	5, 559, 738, 818
HapII	CCGG	2 cut(s)	251, 302
Hin1II	CATG	1 cut(s)	596
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	2 cut(s)	322, 506
HpaII	CCGG	2 cut(s)	251, 302
HphI	GGTGA	1 cut(s)	766
Hpy166II	GTNNAC	3 cut(s)	243, 370, 590
Hpy188I	TCNGA	3 cut(s)	352, 644, 955
Hpy188III	TCNNGA	3 cut(s)	251, 765, 824
Hpy8I	GTNNAC	3 cut(s)	243, 370, 590
Hpy99I	CGWCG	1 cut(s)	182
HpyAV	CCTTC	4 cut(s)	745, 749, 830, 991
HpyCH4III	ACNGT	5 cut(s)	178, 208, 247, 364, 923
HpyCH4V	TGCA	5 cut(s)	24, 212, 265, 523, 572
HpyF10VI	GCNNNNNNNGC	6 cut(s)	21, 221, 548, 578, 815, 1012
HpyF3I	CTNAG	3 cut(s)	351, 649, 910
Hsp92II	CATG	1 cut(s)	596
Kpn2I	TCCGGA	1 cut(s)	250
Kzo9I	GATC	6 cut(s)	83, 196, 767, 934, 946, 950
LmnI	GCTCC	2 cut(s)	32, 814
Lsp1109I	GCAGC	8 cut(s)	36, 224, 249, 328, 556, 568, 679, 818
LweI	GCATC	3 cut(s)	51, 670, 993
MaeI	CTAG	3 cut(s)	597, 1016, 1027
MaeIII	GTNAC	1 cut(s)	1018
MalI	GATC	6 cut(s)	85, 198, 769, 936, 948, 952
MboI	GATC	6 cut(s)	83, 196, 767, 934, 946, 950
MboII	GAAGA	2 cut(s)	401, 452
MhlI	GDGCHC	3 cut(s)	37, 290, 621
MluCI	AATT	5 cut(s)	91, 130, 327, 771, 855
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	9 cut(s)	136, 346, 436, 466, 621, 720, 728, 949, 952
MroI	TCCGGA	1 cut(s)	250
MroXI	GAANNNNTTC	1 cut(s)	393
MseI	TTAA	1 cut(s)	663
MspCI	CTTAAG	1 cut(s)	662
MspI	CCGG	2 cut(s)	251, 302
MspR9I	CCNGG	3 cut(s)	303, 744, 980
MvaI	CCWGG	2 cut(s)	744, 980
MwoI	GCNNNNNNNGC	6 cut(s)	21, 221, 548, 578, 815, 1012
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	6 cut(s)	83, 196, 767, 934, 946, 950
NlaIII	CATG	1 cut(s)	596
NlaIV	GGNNCC	5 cut(s)	124, 249, 289, 307, 618
NspI	RCATGY	1 cut(s)	596
PceI	AGGCCT	1 cut(s)	738
PdmI	GAANNNNTTC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	322, 506
PflMI	CCANNNNNTGG	1 cut(s)	118
PfoI	TCCNGGA	1 cut(s)	978
PkrI	GCNGC	9 cut(s)	26, 214, 264, 343, 558, 571, 583, 669, 808
Psp124BI	GAGCTC	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	742, 978
PspGI	CCWGG	2 cut(s)	742, 978
PspN4I	GGNNCC	5 cut(s)	124, 249, 289, 307, 618
PspPI	GGNCC	3 cut(s)	4, 174, 817
PstI	CTGCAG	2 cut(s)	26, 574
PstNI	CAGNNNCTG	1 cut(s)	118
RsaI	GTAC	3 cut(s)	606, 785, 970
RsaNI	GTAC	3 cut(s)	605, 784, 969
SacI	GAGCTC	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	663
SatI	GCNGC	9 cut(s)	25, 213, 263, 342, 557, 570, 582, 668, 807
Sau3AI	GATC	6 cut(s)	83, 196, 767, 934, 946, 950
Sau96I	GGNCC	3 cut(s)	4, 174, 817
ScaI	AGTACT	1 cut(s)	785
ScrFI	CCNGG	3 cut(s)	303, 744, 980
SduI	GDGCHC	3 cut(s)	37, 290, 621
SetI	ASST	9 cut(s)	37, 150, 217, 602, 672, 756, 762, 811, 963
SfaNI	GCATC	3 cut(s)	51, 670, 993
SfcI	CTRYAG	2 cut(s)	22, 570
SinI	GGWCC	1 cut(s)	174
SmlI	CTYRAG	1 cut(s)	662
SmoI	CTYRAG	1 cut(s)	662
Sse9I	AATT	5 cut(s)	91, 130, 327, 771, 855
SseBI	AGGCCT	1 cut(s)	738
SsiI	CCGC	2 cut(s)	200, 556
SspMI	CTAG	3 cut(s)	597, 1016, 1027
SstI	GAGCTC	1 cut(s)	37
StuI	AGGCCT	1 cut(s)	738
StyD4I	CCNGG	3 cut(s)	301, 742, 978
StyI	CCWWGG	2 cut(s)	424, 532
TaaI	ACNGT	5 cut(s)	178, 208, 247, 364, 923
TaqI	TCGA	4 cut(s)	195, 320, 325, 949
TasI	AATT	5 cut(s)	91, 130, 327, 771, 855
TatI	WGTACW	3 cut(s)	604, 783, 968
TauI	GCSGC	1 cut(s)	559
TfiI	GAWTC	2 cut(s)	322, 506
Tru1I	TTAA	1 cut(s)	663
Tru9I	TTAA	1 cut(s)	663
TscAI	CASTG	2 cut(s)	918, 928
TseI	GCWGC	8 cut(s)	24, 212, 262, 341, 569, 581, 667, 806
TspDTI	ATGAA	3 cut(s)	386, 519, 531
TspGWI	ACGGA	3 cut(s)	499, 707, 855
TspRI	CASTG	2 cut(s)	918, 928
Van91I	CCANNNNNTGG	1 cut(s)	118
Vha464I	CTTAAG	1 cut(s)	662
VpaK11BI	GGWCC	1 cut(s)	174
XapI	RAATTY	3 cut(s)	91, 130, 327
XceI	RCATGY	1 cut(s)	596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	868
XmnI	GAANNNNTTC	1 cut(s)	393
XspI	CTAG	3 cut(s)	597, 1016, 1027
ZrmI	AGTACT	1 cut(s)	785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.