pycom02g21600

ABC transporter D family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0006235
Physical Location & Seq
Reverse (-)
19857392 .. 19863321
5930 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1467 bp
ATGCCGTCGCTTCAGCTGCTGCAATTGACTGAGCATGGCCGCAATTTCATGGCGTCGAGGAGGAAAACTTTACTACTTGCCACTGGTATCGTAGTTGCTGGTGGAACGGCTGCATATGTTCAATCGCGATTAAACCATAACAAGCATGGTTTTCATGGTCAATACAATGGGCTTGATGATAGTGAAGAGACAACGGAGAGGGCCATGTTGAGTGATCACAAGTTAAAGAAACCTCCACGTAAGAAAGGGGGATTGAAGTCGCTTCAAGTCCTTGCTGCAATTCTCTTATCCGATATGGGTCAAATGGGTGTGAGGGATCTTTTATCTTTACTCTCCATAGTGGTGTTGCGAACTGCTTTGAGCAACAGACTAGCAAAAGTCCAAGGATTTCTATTCCGTGCAGCTTTCCTTCGACGCATGCCATTATTTTTCCGGTTGATTTCTGAAAATATTTTATTATGTTTCCTTGTATCAACGATGCATTCTACTTCAAAGTACATCACCGGAACCTTAAGTCTGCGATTCAGAAAAATATTGACAAACCTTATCCATTCCCATTATTTTGAGAATATCACATACTACAAAATGTCTCATGTCGATGGTCGAATAACAAATCCTGAACAGCGAATTGCAAGTGATGTGCCAAAGTTCTGTTCAGAGTTGAGTGAAATCGTGCAGGATGATTTGACAGCTGTTACTGATGGTGTACTTTATACTTGGCGGTTGTGCTCTTATGCCAGTCCTAAATATGTATTCTGGATATTGGCATATGTATTAGGGGCAGGGGCCATGATAAGAAATTTTTCTCCTGCTTTTGGGAAACTAATGTCCAAAGAACAACAATTGGAAGGGGAGTACCGGCAGCTTCATTCTCGATTAAGGACCCATGCAGAAAGCGTGGCATTTTATGGTGGGGAGAATAGAGAAGAATCTCATATTAAGAAGAAGTTTGAGACACTGATTAGGCATATGCGTGTTGTCCTTCATGACCATTGGTGGTTTGGCATGATTCAAGACTTTCTATTGAAGTATCTTGGTGCTACAGTTGCTGTTATACTGATTATTGAGCCTTTCTTTTCGGGACATCTGAGGCCTGACACTTCAACTTTAGGTCGCGCAGAGATGTTAAGCAATTTAAGATACCATACTAGTGTCATAATTTCACTATTTCAGTCTCTGGGAACTCTTTCGATAAGTTCAAGGAAGCTAAATCGGCTCAGTGGTTACGCCGATCGCATTCATGAATTATTGGCCATATCAAAAGAGCTCAGTGTGGCTAATAGTAAATCTTCCGGGACCAGAAATTGCTTTAGTGAAGCTGATTACATTGAATTTTCTGGTGTCAAGGTTGTTACACCCACGGGTAATGTTTTGGTGGATAATTTGTCACTTAGGGTCGAATCAGGATCTAATCTTTTGATTACAGGTCCAAACGGTAGTGGGAAGAGCTCACTTTCCGAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006629 GO:0008150 GO:0008152 GO:0009056 GO:0016042 GO:0044238 GO:0071704 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko02010 ko04146 map02010 map04146
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

489

Amino Acids

54.87

Weight (kDa)

9.65

Isoelectric Point (pI)

41.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 91 - 359 2.8e-88 ABC transporter transmembrane region 2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 127, 1116
AciI CCGC 2 cut(s) 40, 721
AclWI GGATC 2 cut(s) 324, 1414
AcoI YGGCCR 2 cut(s) 37, 1251
AcsI RAATTY 2 cut(s) 799, 1331
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 3 cut(s) 497, 708, 857
AfiI CCNNNNNNNGG 1 cut(s) 815
AflII CTTAAG 1 cut(s) 511
AgsI TTSAA 9 cut(s) 122, 256, 266, 492, 1013, 1027, 1104, 1200, 1331
AhlI ACTAGT 1 cut(s) 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 637, 669
AluBI AGCT 8 cut(s) 16, 404, 692, 865, 1207, 1267, 1319, 1449
AluI AGCT 8 cut(s) 16, 404, 692, 865, 1207, 1267, 1319, 1449
Alw21I GWGCWC 3 cut(s) 731, 1269, 1451
Alw26I GTCTC 4 cut(s) 182, 594, 947, 1179
AlwI GGATC 2 cut(s) 324, 1414
AlwNI CAGNNNCTG 3 cut(s) 19, 1049, 1177
AoxI GGCC 5 cut(s) 37, 201, 786, 1091, 1251
ApeKI GCWGC 6 cut(s) 16, 19, 110, 275, 401, 862
ApoI RAATTY 2 cut(s) 799, 1331
Asp700I GAANNNNTTC 2 cut(s) 802, 1186
AspLEI GCGC 1 cut(s) 1118
AspS9I GGNCC 5 cut(s) 201, 786, 882, 1296, 1427
AsuC2I CCSGG 1 cut(s) 1294
AsuHPI GGTGA 1 cut(s) 493
AvaII GGWCC 3 cut(s) 882, 1296, 1427
BalI TGGCCA 1 cut(s) 1253
BanII GRGCYC 2 cut(s) 1269, 1451
Bbv12I GWGCWC 3 cut(s) 731, 1269, 1451
BbvI GCAGC 6 cut(s) 3, 6, 97, 262, 413, 874
BccI CCATC 2 cut(s) 593, 695
BceAI ACGGC 1 cut(s) 123
BclI TGATCA 1 cut(s) 214
BcnI CCSGG 1 cut(s) 1294
BcoDI GTCTC 4 cut(s) 182, 594, 947, 1179
BcuI ACTAGT 1 cut(s) 1148
BfaI CTAG 3 cut(s) 371, 1149, 1465
BfmI CTRYAG 1 cut(s) 1041
BfrI CTTAAG 1 cut(s) 511
BisI GCNGC 7 cut(s) 17, 20, 40, 111, 276, 402, 863
BlsI GCNGC 7 cut(s) 18, 21, 41, 112, 277, 403, 864
Bme1390I CCNGG 1 cut(s) 1294
Bme18I GGWCC 3 cut(s) 882, 1296, 1427
BmgT120I GGNCC 5 cut(s) 201, 786, 882, 1296, 1427
BmiI GGNNCC 4 cut(s) 508, 787, 884, 1297
BmrFI CCNGG 1 cut(s) 1294
BmsI GCATC 1 cut(s) 468
BpuMI CCSGG 1 cut(s) 1294
BsaAI YACGTR 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 2 cut(s) 382, 1359
BsaWI WCCGGW 2 cut(s) 432, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 815
Bse118I RCCGGY 1 cut(s) 858
Bse1I ACTGG 2 cut(s) 88, 738
BseDI CCNNGG 2 cut(s) 382, 1359
BseGI GGATG 1 cut(s) 685
BseLI CCNNNNNNNGG 1 cut(s) 815
BseMII CTCAG 4 cut(s) 21, 1079, 1231, 1282
BseNI ACTGG 2 cut(s) 88, 738
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 6 cut(s) 3, 6, 97, 262, 413, 874
BsgI GTGCAG 2 cut(s) 420, 695
Bsh1236I CGCG 2 cut(s) 127, 1116
Bsh1285I CGRYCG 1 cut(s) 1234
BshFI GGCC 5 cut(s) 39, 203, 788, 1093, 1253
BsiEI CGRYCG 1 cut(s) 1234
BsiHKAI GWGCWC 3 cut(s) 731, 1269, 1451
BsiSI CCGG 4 cut(s) 433, 504, 859, 1293
BslFI GGGAC 2 cut(s) 1095, 1309
BslI CCNNNNNNNGG 1 cut(s) 815
BsmAI GTCTC 4 cut(s) 182, 594, 947, 1179
BsmFI GGGAC 2 cut(s) 1095, 1309
BsmI GAATGC 2 cut(s) 481, 1236
BsnI GGCC 5 cut(s) 39, 203, 788, 1093, 1253
Bsp1286I GDGCHC 3 cut(s) 731, 1269, 1451
Bsp143I GATC 4 cut(s) 214, 316, 1231, 1406
Bsp68I TCGCGA 1 cut(s) 127
BspACI CCGC 2 cut(s) 40, 721
BspANI GGCC 5 cut(s) 39, 203, 788, 1093, 1253
BspCNI CTCAG 4 cut(s) 22, 1080, 1230, 1281
BspFNI CGCG 2 cut(s) 127, 1116
BspHI TCATGA 2 cut(s) 985, 1240
BspLI GGNNCC 4 cut(s) 508, 787, 884, 1297
BspPI GGATC 2 cut(s) 324, 1414
BspQI GCTCTTC 1 cut(s) 1439
BspTI CTTAAG 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 858
BsrI ACTGG 2 cut(s) 88, 738
BssAI RCCGGY 1 cut(s) 858
BssECI CCNNGG 2 cut(s) 382, 1359
BssMI GATC 4 cut(s) 214, 316, 1231, 1406
BssNI GRCGYC 1 cut(s) 53
BssT1I CCWWGG 1 cut(s) 382
Bst4CI ACNGT 2 cut(s) 1045, 1436
Bst6I CTCTTC 2 cut(s) 180, 1439
BstACI GRCGYC 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 511
BstBAI YACGTR 1 cut(s) 239
BstC8I GCNNGC 1 cut(s) 419
BstDEI CTNAG 5 cut(s) 30, 1088, 1217, 1268, 1391
BstDSI CCRYGG 1 cut(s) 1359
BstF5I GGATG 1 cut(s) 685
BstFNI CGCG 2 cut(s) 127, 1116
BstHHI GCGC 1 cut(s) 1118
BstKTI GATC 4 cut(s) 217, 319, 1234, 1409
BstMAI GTCTC 4 cut(s) 182, 594, 947, 1179
BstMBI GATC 4 cut(s) 214, 316, 1231, 1406
BstMCI CGRYCG 1 cut(s) 1234
BstMWI GCNNNNNNNGC 3 cut(s) 16, 1046, 1213
BstNSI RCATGY 1 cut(s) 421
BstSCI CCNGG 1 cut(s) 1292
BstSFI CTRYAG 1 cut(s) 1041
BstUI CGCG 2 cut(s) 127, 1116
BstV1I GCAGC 6 cut(s) 3, 6, 97, 262, 413, 874
BstX2I RGATCY 2 cut(s) 316, 1406
BstYI RGATCY 2 cut(s) 316, 1406
BsuRI GGCC 5 cut(s) 39, 203, 788, 1093, 1253
BtgI CCRYGG 1 cut(s) 1359
BtsCI GGATG 1 cut(s) 685
BtsIMutI CAGTG 4 cut(s) 81, 956, 1225, 1276
BtuMI TCGCGA 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 419
CaiI CAGNNNCTG 3 cut(s) 19, 1049, 1177
CciI TCATGA 2 cut(s) 985, 1240
CfoI GCGC 1 cut(s) 1118
Cfr10I RCCGGY 1 cut(s) 858
Cfr13I GGNCC 5 cut(s) 201, 786, 882, 1296, 1427
CseI GACGC 2 cut(s) 42, 423
Csp6I GTAC 3 cut(s) 496, 707, 856
CviQI GTAC 3 cut(s) 496, 707, 856
DdeI CTNAG 5 cut(s) 30, 1088, 1217, 1268, 1391
DpnI GATC 4 cut(s) 216, 318, 1233, 1408
DpnII GATC 4 cut(s) 214, 316, 1231, 1406
EaeI YGGCCR 2 cut(s) 37, 1251
Eam1104I CTCTTC 2 cut(s) 180, 1439
EarI CTCTTC 2 cut(s) 180, 1439
Ecl136II GAGCTC 2 cut(s) 1267, 1449
Eco130I CCWWGG 1 cut(s) 382
Eco147I AGGCCT 1 cut(s) 1093
Eco24I GRGCYC 2 cut(s) 1269, 1451
Eco47I GGWCC 3 cut(s) 882, 1296, 1427
Eco53kI GAGCTC 2 cut(s) 1267, 1449
EcoICRI GAGCTC 2 cut(s) 1267, 1449
EcoO109I RGGNCCY 1 cut(s) 882
EcoT14I CCWWGG 1 cut(s) 382
EcoT22I ATGCAT 1 cut(s) 483
EcoT38I GRGCYC 2 cut(s) 1269, 1451
ErhI CCWWGG 1 cut(s) 382
FaqI GGGAC 2 cut(s) 1095, 1309
FauNDI CATATG 3 cut(s) 115, 769, 969
FbaI TGATCA 1 cut(s) 214
Fnu4HI GCNGC 7 cut(s) 17, 20, 40, 111, 276, 402, 863
FokI GGATG 1 cut(s) 692
FriOI GRGCYC 2 cut(s) 1269, 1451
Fsp4HI GCNGC 7 cut(s) 17, 20, 40, 111, 276, 402, 863
FspBI CTAG 3 cut(s) 371, 1149, 1465
GlaI GCGC 1 cut(s) 1117
GluI GCNGC 7 cut(s) 17, 20, 40, 111, 276, 402, 863
HaeIII GGCC 5 cut(s) 39, 203, 788, 1093, 1253
HapII CCGG 4 cut(s) 433, 504, 859, 1293
HgaI GACGC 2 cut(s) 42, 423
HhaI GCGC 1 cut(s) 1118
Hin1I GRCGYC 1 cut(s) 53
Hin6I GCGC 1 cut(s) 1116
HinP1I GCGC 1 cut(s) 1116
HinfI GANTC 4 cut(s) 522, 929, 1009, 1400
HpaII CCGG 4 cut(s) 433, 504, 859, 1293
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 1 cut(s) 707
Hpy188I TCNGA 6 cut(s) 292, 445, 527, 658, 1089, 1459
Hpy188III TCNNGA 9 cut(s) 126, 617, 757, 873, 986, 1013, 1080, 1241, 1404
Hpy8I GTNNAC 1 cut(s) 707
Hpy99I CGWCG 3 cut(s) 10, 58, 417
HpyAV CCTTC 3 cut(s) 419, 842, 992
HpyCH4III ACNGT 2 cut(s) 1045, 1436
HpyCH4IV ACGT 1 cut(s) 238
HpyCH4V TGCA 8 cut(s) 22, 113, 278, 401, 481, 632, 676, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 1046, 1213
HpyF3I CTNAG 5 cut(s) 30, 1088, 1217, 1268, 1391
HpySE526I ACGT 1 cut(s) 238
Hsp92I GRCGYC 1 cut(s) 53
HspAI GCGC 1 cut(s) 1116
Ksp22I TGATCA 1 cut(s) 214
Kzo9I GATC 4 cut(s) 214, 316, 1231, 1406
LguI GCTCTTC 1 cut(s) 1439
Lsp1109I GCAGC 6 cut(s) 3, 6, 97, 262, 413, 874
LweI GCATC 1 cut(s) 468
MaeI CTAG 3 cut(s) 371, 1149, 1465
MaeII ACGT 1 cut(s) 238
MaeIII GTNAC 4 cut(s) 694, 1223, 1351, 1386
MalI GATC 4 cut(s) 216, 318, 1233, 1408
MboI GATC 4 cut(s) 214, 316, 1231, 1406
MboII GAAGA 5 cut(s) 197, 938, 955, 1281, 1456
MfeI CAATTG 2 cut(s) 23, 842
MflI RGATCY 2 cut(s) 316, 1406
MhlI GDGCHC 3 cut(s) 731, 1269, 1451
MlsI TGGCCA 1 cut(s) 1253
MluNI TGGCCA 1 cut(s) 1253
MnlI CCTC 6 cut(s) 51, 54, 192, 243, 306, 1083
Mox20I TGGCCA 1 cut(s) 1253
Mph1103I ATGCAT 1 cut(s) 483
MroXI GAANNNNTTC 2 cut(s) 802, 1186
MscI TGGCCA 1 cut(s) 1253
MseI TTAA 7 cut(s) 131, 224, 512, 878, 939, 1127, 1136
MslI CAYNNNNRTG 4 cut(s) 341, 597, 972, 1149
Msp20I TGGCCA 1 cut(s) 1253
MspA1I CMGCKG 2 cut(s) 16, 692
MspCI CTTAAG 1 cut(s) 511
MspI CCGG 4 cut(s) 433, 504, 859, 1293
MspR9I CCNGG 1 cut(s) 1294
MunI CAATTG 2 cut(s) 23, 842
Mva1269I GAATGC 2 cut(s) 481, 1236
MvnI CGCG 2 cut(s) 127, 1116
MwoI GCNNNNNNNGC 3 cut(s) 16, 1046, 1213
NciI CCSGG 1 cut(s) 1294
NdeI CATATG 3 cut(s) 115, 769, 969
NdeII GATC 4 cut(s) 214, 316, 1231, 1406
NlaIV GGNNCC 4 cut(s) 508, 787, 884, 1297
NmuCI GTSAC 1 cut(s) 1386
NruI TCGCGA 1 cut(s) 127
NsiI ATGCAT 1 cut(s) 483
NspI RCATGY 1 cut(s) 421
PaeI GCATGC 1 cut(s) 421
PagI TCATGA 2 cut(s) 985, 1240
PceI AGGCCT 1 cut(s) 1093
PciSI GCTCTTC 1 cut(s) 1439
PctI GAATGC 2 cut(s) 481, 1236
PdmI GAANNNNTTC 2 cut(s) 802, 1186
PfeI GAWTC 4 cut(s) 522, 929, 1009, 1400
PfoI TCCNGGA 1 cut(s) 1292
PkrI GCNGC 7 cut(s) 18, 21, 41, 112, 277, 403, 864
Ple19I CGATCG 1 cut(s) 1234
Ppu21I YACGTR 1 cut(s) 239
PpuMI RGGWCCY 1 cut(s) 882
Psp124BI GAGCTC 2 cut(s) 1269, 1451
Psp5II RGGWCCY 1 cut(s) 882
PspN4I GGNNCC 4 cut(s) 508, 787, 884, 1297
PspPI GGNCC 5 cut(s) 201, 786, 882, 1296, 1427
PspPPI RGGWCCY 1 cut(s) 882
PstNI CAGNNNCTG 3 cut(s) 19, 1049, 1177
PsuI RGATCY 2 cut(s) 316, 1406
PvuI CGATCG 1 cut(s) 1234
PvuII CAGCTG 2 cut(s) 16, 692
RruI TCGCGA 1 cut(s) 127
RsaI GTAC 3 cut(s) 497, 708, 857
RsaNI GTAC 3 cut(s) 496, 707, 856
RseI CAYNNNNRTG 4 cut(s) 341, 597, 972, 1149
SacI GAGCTC 2 cut(s) 1269, 1451
SapI GCTCTTC 1 cut(s) 1439
SaqAI TTAA 7 cut(s) 131, 224, 512, 878, 939, 1127, 1136
SatI GCNGC 7 cut(s) 17, 20, 40, 111, 276, 402, 863
Sau3AI GATC 4 cut(s) 214, 316, 1231, 1406
Sau96I GGNCC 5 cut(s) 201, 786, 882, 1296, 1427
ScrFI CCNGG 1 cut(s) 1294
SduI GDGCHC 3 cut(s) 731, 1269, 1451
SfaNI GCATC 1 cut(s) 468
SfcI CTRYAG 1 cut(s) 1041
SinI GGWCC 3 cut(s) 882, 1296, 1427
SmiMI CAYNNNNRTG 4 cut(s) 341, 597, 972, 1149
SmlI CTYRAG 1 cut(s) 511
SmoI CTYRAG 1 cut(s) 511
SpeI ACTAGT 1 cut(s) 1148
SphI GCATGC 1 cut(s) 421
SseBI AGGCCT 1 cut(s) 1093
SsiI CCGC 2 cut(s) 40, 721
SspI AATATT 2 cut(s) 451, 534
SspMI CTAG 3 cut(s) 371, 1149, 1465
SstI GAGCTC 2 cut(s) 1269, 1451
StuI AGGCCT 1 cut(s) 1093
StyD4I CCNGG 1 cut(s) 1292
StyI CCWWGG 1 cut(s) 382
TaaI ACNGT 2 cut(s) 1045, 1436
TaiI ACGT 1 cut(s) 241
TaqI TCGA 7 cut(s) 56, 412, 597, 604, 874, 1190, 1398
TatI WGTACW 2 cut(s) 495, 706
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 4 cut(s) 522, 929, 1009, 1400
Tru1I TTAA 7 cut(s) 131, 224, 512, 878, 939, 1127, 1136
Tru9I TTAA 7 cut(s) 131, 224, 512, 878, 939, 1127, 1136
TscAI CASTG 4 cut(s) 88, 963, 1225, 1276
TseFI GTSAC 1 cut(s) 1386
TseI GCWGC 6 cut(s) 16, 19, 110, 275, 401, 862
Tsp45I GTSAC 1 cut(s) 1386
TspDTI ATGAA 6 cut(s) 37, 143, 857, 974, 1229, 1257
TspGWI ACGGA 2 cut(s) 209, 386
TspRI CASTG 4 cut(s) 88, 963, 1225, 1276
Vha464I CTTAAG 1 cut(s) 511
VpaK11BI GGWCC 3 cut(s) 882, 1296, 1427
XapI RAATTY 2 cut(s) 799, 1331
XceI RCATGY 1 cut(s) 421
XcmI CCANNNNNNNNNTGG 2 cut(s) 143, 998
XmnI GAANNNNTTC 2 cut(s) 802, 1186
XspI CTAG 3 cut(s) 371, 1149, 1465
Zsp2I ATGCAT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.