Rw0G006770

ABC transporter D family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00247
OG0006235
Physical Location & Seq
Reverse (-)
38112 .. 52703
14592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006770.1

Sequence Viewer

Length: 4041 bp
ATGCCTTCGCTTCAGCTGTTGCAATTAACTGAGCATGGTCGGAGTTTCATTGCATCAAGGAGGAAAACCTTGCTTCTTGCTACTGGTATTGTAGTTGCTGGTGGGGCTGCTGCATATGTTCAATCGAGATTAACCCATAAAAAGCACAATTCTTTTGGTCAATATAATGGGCTGAATGAAAATAAAGTGACAGAGAATGTCGTGGCGAATGATCATAAGAAAAAGAAACTTCCACAAAAGAGAGGGGGATTGAAGTCTCTTCAAGTCCTTGCTGCAATTCTTTTGTCTGAAATGGGCCAAATGGGTGCGAGGGACCTCTTATCTTTGGTCGGAATAGTGGTGTTGCGAACTGCTTTGAGCAACAGACTTGCAAAAGTCCAAGGGTTTTTATTCCGTGCAGCTTTTCTTCGACGTGTTCCATTATTTGTCCGGCTGATTTCAGAGAATATTCTATTATGTTTCCTTGCCTCAACTATGCATTCAACTTCACAGTACATAACAGGGACCTTAAGTCTGCGGTTCAGAAAAATATTGACAAAACGTATCCATTCCCATTATTTTGAGAATATTGCATACTACAAAATGTCACATGTCGATGGTCGGATAACTAATCCGGAACAGCGAATTGCAAGTGATGTACCAAGGTTCTGTTCAGAGTTGAGTGAAATCGTACAAGATGATTTAACAGCTGTTACTGATGGTCTCCTTTACTCTTGGCGGCTGTGTTCCTACACCAGTCCTAAATATATATTCTGGATATTGGCATATGTATTGGGAGCAGGGGGGATGATAAGAAAGTTCTCTCCTCCTTTTGGGACATTAATGTCCAAAGAACAACAATTGGAAGGGGAGTACCGACAGCTTCATTCACGATTAAGAACCCATGCAGAAAGTGTGGCATTCTATGGTGGAGAAAGTAGGGAGGAATCTCATATTCAGAAGAAGTTTAACACACTGGTTGGGCATCTGCGTGTTGTCCTTCATGATCATTGGTGGTTTGGCATGATTCAAGACTTCCTGTTGAAGTATCTTGGTGCCACAGTTGCTGTTATATTGATTATTGAGCCCTTCTTTTCGGGCAGTCTGAGGCCTGACACTTCAACTTTAGGCCGCGCAGAGATGTTAAGCAACTTAAGATATCATACCAGTGTCATAATTTCACTTTTCCAGTCTATGGGAACTCTCGCTTCAAGTTCGAGAAAACTCAATCGTCTCAGTGGTTACGCTGATCGCATTCATGAATTAATGGTCATAGCAAGAGAGCTAAGTGCTGTTGATGACAAATCTTCTGGGAGTAAAAATTGCTCTAGTGAGGCTGATTACATTGAATTTGCTGGGGTCAAGGTATCTATAAGTTGTTACCCCACGGATAATGTTTTGGTGGATAATTTGTCACTTAGGGTTGAACCAGGATCTAATCTTTTGATTACAGGTCCAAATGGCAGTGGAAAGAGCTCGCTTTTCCGAGTTTTAGGAGGCCTGTGGCCCTTGGTATCTGGCCATATTGTCAAACCTGGTGTTGGAACTGATCTCAACAAAGAAATTTTCTATGTTCCACAAAGACCATACACAGCTGTCGGAACACTTCGAGACCAGTTGATTTATCCTCTTACTGCAGATCAAGAGGTCAAACCACTTACACGTGGAGAAATGGCGGAGCTATTGAGAAATGTTGATCTTCAGTATTTATTAGACCGTTATCCACCTGAGGAAGAGATAAATTGGGGTGATGAATTATCTCTTGGTGAGCAACAAAGATTGGGGATGGCTAGACTTTTCTATCATAAGCCCAAATTTGCAATTCTTGATGAGTGCACAAGTGCTGTCACAACTGACATGGAGGAACGATTCTGTGCTAAAGTTCGAGCAATGGGAACATCATGCATTACTATCTCGCATCGTCCAGCACTAGTTGCATTTCATGATGTAGTGCTGTCCTTGGATGGTGAAGGCGGTTGGCGTGTTCATGATAAAAGGGAGGATTCTCTAGTACGTAATGAAGGTGGGAGAAGTATGTTGAAGCTTTCTGAAACGAACCGGCAGAGTGATGCATTGACAGTTCAGCGAGCATTCGCCTCGACCAAAAAGGATTCCGCAATCTCAAACTCAAAGTCCCAGTCATACATTGCTGAGGTGATAGCAGTTTCTCCCTCTGCCGAGCATAATGTTACAGTTCCGTCTTTCCCACATCTCCAAAGTGCTCCGGCAGCACTGCCATTGAGAGCATCTGCCATGGTCAAAGTACTGATTCCCACTGTTATTGATAAACAAGGAGCACAACTGCTTGCAGTTGCTTTTCTCGTAGTATCGAGGACATGGATTTCTGATCGTATTGCTTCATTAAATGGAACCACTGTGAAGTTTGTTTTGGAACAAGATAAGGCATCATTTATTCATCTAATTGGTGTTAGCGTACTTCAGAGTGCGGCATCTTCTTTCATTGCACCTTCTATAAGGCACTTAAAAGCTAGGCTGGCTCTTGGGTGGAGGACTCGTTTGACTCAACATTTACTTAAAAACTACTTGAGAAATAATGCGTTCTATAAGGTATTCAACATGTCAAGCAAAAACATAGACGCAGATCAGAGAGTTACACAGGACCTTGAAAAGTTAACCACTGACTTGTCGGGATTGGTTACTGGATTGGTAAAGCCATCTGTGGACATTCTTTGGTTCACCTGGAGAATGAAGCTTTTGACTGGTCAGAGAGGAGTAACTATATTGTACGCGTATATGTTACTGGGTCTTGGTTTGCTCAGGGCTGCTACCCCAGAATTTGGTGATTTGACAAGTCGTCAACAACAACTTGAAGGAACCTTTAGGTTTATGCATGAAAGACTGCGTGCTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTTATAGAGAGAAAGCTATGGTTGAATCAAAGTTCAAGGAGCTACTCCATCACTCCTCGTCTCTTTTGAAGAAGCAATGGTTATTTGGTATTCTAGATGATTTTATCACGAAACAACTCCCACATAATGTGACTTGGGGATTGAGCTTGCTATATGCCATTGAACACAAGGGAGACCGAGCATTAATATCTACTCAAGGTGAGCTGGCACATGCATTGCGTTTCTTGGCATCTGTGGTATCTCAAAGCTTTTTAGCTTTCGGTGACATTCTTGAATTGCATAGAAAATTCCTGGAACTCTCTGGCAGCATCAACAGGGTTTTTGAACTTGAAGAGCTTTTAGACGCTGCACAATCTGTGGTTGGCTATTCTGGGGATTCTGAAGCTGGTAACTCGTCATCATCTGAAAGGGAAGGTTTTCAATTTGAAGATGCCATTAACTTCTCTGAAGTTGATATCATAACCCCGTCACGGAAATTGTTGGCTAGGAAATTAACATGTGATATAGTACCTGGGAAAAGCTTGCTTGTTACTGGTCCAAACGGGAGTGGAAAAAGTTCTGTGTTTAGAGTTCTTAGAGGTCTTTGGCCCATCATGAGTGGAAGAATCACTAGACCATCTCAAGATATTAACGGAGTTAGTAGAGATGTTGGATCTGGTTGCGGAGTTTTTTATGTTCCTCAGCGACCTTACACATGCTTGGGAACACTCAGGGATCAAATTATATATCCTCTCTCTTTTGATGAGGCGGAGAAAAGGGCATTGAAGTTGTATCAAGAAGGTGGAAAATTTGCTGACAGCACAAACATTCTGGACATGTGTTTGGGAACTATTCTGGAGAATGTCCGATTAAGTTATCTTTTGGAAAGGGAGGAAGGTGGTTGGGATGCTAATCTCAATTGGGAGGACACTCTCTCTCTCGGAGAACAGCAGAGATTAGGCATGGCACGCTTATTTTTTCATAAACCAAAATTCGCCATCCTTGATGAATGCACCAATGCTACAAGTGTTGATGTTGAAGAACAACTCTATCGGCTTGCAAAAGACATGGGTATCACAGTTGTTACCTCCTCACAACGTCCTGCTCTAATACCATTCCATTCCCTGGAATTACGGCTTATTGATGGTGAGGGTAACTGGGAGCTTCGATCAATAAAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006629 GO:0008150 GO:0008152 GO:0009056 GO:0016042 GO:0044238 GO:0071704 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko02010 ko04146 map02010 map04146
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

1346

Amino Acids

150.31

Weight (kDa)

9.07

Isoelectric Point (pI)

45.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 90 - 358 1e-87 ABC transporter transmembrane region 2
ABC_tran PF00005 462 - 607 6.1e-20 ABC transporter
ABC_membrane_2 PF06472 745 - 1011 2.6e-81 ABC transporter transmembrane region 2
ABC_tran PF00005 1123 - 1292 5.4e-15 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 823
AccB1I GGYRCC 1 cut(s) 1034
AccB7I CCANNNNNTGG 3 cut(s) 1174, 2777, 3982
AccII CGCG 2 cut(s) 1113, 2729
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 9 cut(s) 517, 718, 1111, 1655, 1953, 2094, 2426, 3540, 3626
AclWI GGATC 3 cut(s) 1420, 3538, 3600
AcoI YGGCCR 1 cut(s) 1498
AcsI RAATTY 7 cut(s) 1328, 1542, 1793, 2774, 3164, 3665, 3848
AcuI CTGAAG 4 cut(s) 1664, 2402, 3279, 3345
AcvI CACGTG 1 cut(s) 1643
AfaI GTAC 9 cut(s) 494, 639, 672, 854, 1992, 2244, 2415, 2726, 3387
AfiI CCNNNNNNNGG 6 cut(s) 812, 1174, 1520, 2777, 3348, 3982
AflII CTTAAG 2 cut(s) 508, 1132
AflIII ACRYGT 7 cut(s) 412, 589, 1640, 2556, 2727, 3374, 3693
AhdI GACNNNNNGTC 2 cut(s) 510, 2793
AhlI ACTAGT 1 cut(s) 1909
AjiI CACGTC 1 cut(s) 413
AjnI CCWGG 6 cut(s) 1408, 1513, 2678, 3168, 3388, 3981
AjuI GAANNNNNNNTTGG 6 cut(s) 634, 666, 1725, 1757, 2351, 2383
Alw21I GWGCWC 5 cut(s) 1457, 1817, 2203, 2278, 2848
Alw26I GTCTC 6 cut(s) 261, 707, 1217, 1584, 2943, 3045
Alw44I GTGCAC 1 cut(s) 1813
AlwI GGATC 3 cut(s) 1420, 3538, 3600
AlwNI CAGNNNCTG 1 cut(s) 1046
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 7 cut(s) 295, 1088, 1108, 1477, 1484, 1498, 3464
ApaLI GTGCAC 1 cut(s) 1813
ApeKI GCWGC 8 cut(s) 107, 110, 272, 398, 2207, 2762, 3183, 3224
ApoI RAATTY 7 cut(s) 1328, 1542, 1793, 2774, 3164, 3665, 3848
ArsI GACNNNNNNTTYG 4 cut(s) 2096, 2102, 2128, 2134
AseI ATTAAT 3 cut(s) 821, 1244, 3062
Asp700I GAANNNNTTC 2 cut(s) 3294, 3433
AspLEI GCGC 1 cut(s) 1115
AspS9I GGNCC 8 cut(s) 295, 313, 504, 1433, 1485, 2599, 3413, 3465
AsuHPI GGTGA 9 cut(s) 1739, 1757, 1958, 2146, 2668, 2792, 3089, 3152, 4016
AvaII GGWCC 5 cut(s) 313, 504, 1433, 2599, 3413
AxyI CCTNAGG 1 cut(s) 1707
BaeGI GKGCMC 1 cut(s) 1817
BaeI ACNNNNGTAYC 2 cut(s) 3913, 3946
BalI TGGCCA 1 cut(s) 1500
BanI GGYRCC 1 cut(s) 1034
BanII GRGCYC 2 cut(s) 1068, 1457
BbrPI CACGTG 1 cut(s) 1643
Bbv12I GWGCWC 5 cut(s) 1457, 1817, 2203, 2278, 2848
BbvCI CCTCAGC 2 cut(s) 2130, 3558
BbvI GCAGC 8 cut(s) 94, 97, 259, 410, 2219, 2749, 3195, 3211
BceAI ACGGC 1 cut(s) 4007
BcgI CGANNNNNNTGC 2 cut(s) 2058, 2092
BciT130I CCWGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
BciVI GTATCC 1 cut(s) 554
BclI TGATCA 2 cut(s) 211, 985
BcoDI GTCTC 6 cut(s) 261, 707, 1217, 1584, 2943, 3045
BcuI ACTAGT 1 cut(s) 1909
BfaI CTAG 8 cut(s) 1308, 1770, 1910, 1988, 2469, 2972, 3363, 3489
BfmI CTRYAG 1 cut(s) 1614
BfrI CTTAAG 2 cut(s) 508, 1132
BfuI GTATCC 1 cut(s) 554
BmcAI AGTACT 1 cut(s) 2244
Bme1390I CCNGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
Bme18I GGWCC 5 cut(s) 313, 504, 1433, 2599, 3413
BmeRI GACNNNNNGTC 2 cut(s) 510, 2793
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 8 cut(s) 295, 313, 504, 1433, 1485, 2599, 3413, 3465
BmiI GGNNCC 5 cut(s) 314, 505, 1036, 2350, 2815
BmrFI CCNGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
BmrI ACTGGG 3 cut(s) 2110, 2750, 4024
BmuI ACTGGG 3 cut(s) 2110, 2750, 4024
BpmI CTGGAG 2 cut(s) 2701, 3734
Bpu10I CCTNAGC 3 cut(s) 2130, 2756, 3558
BpuEI CTTGAG 3 cut(s) 2545, 3057, 3483
BsaAI YACGTR 2 cut(s) 1643, 1994
BsaBI GATNNNNATC 1 cut(s) 3768
BsaI GGTCTC 3 cut(s) 707, 1584, 3045
BsaJI CCNNGG 8 cut(s) 379, 641, 1365, 1488, 1938, 2232, 3389, 3981
BsaWI WCCGGW 1 cut(s) 613
BsaXI ACNNNNNCTCC 2 cut(s) 2479, 2509
Bsc4I CCNNNNNNNGG 6 cut(s) 812, 1174, 1520, 2777, 3348, 3982
Bse118I RCCGGY 1 cut(s) 2037
Bse21I CCTNAGG 1 cut(s) 1707
Bse3DI GCAATG 6 cut(s) 48, 1875, 2124, 2439, 2960, 3092
Bse8I GATNNNNATC 1 cut(s) 3768
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
BseDI CCNNGG 8 cut(s) 379, 641, 1365, 1488, 1938, 2232, 3389, 3981
BseGI GGATG 5 cut(s) 792, 1770, 1948, 3769, 3855
BseJI GATNNNNATC 1 cut(s) 3768
BseLI CCNNNNNNNGG 6 cut(s) 812, 1174, 1520, 2777, 3348, 3982
BseMI GCAATG 6 cut(s) 48, 1875, 2124, 2439, 2960, 3092
BseMII CTCAG 8 cut(s) 21, 1076, 1228, 1698, 2121, 2770, 3572, 3601
BseRI GAGGAG 4 cut(s) 795, 2724, 2923, 3937
BseSI GKGCMC 1 cut(s) 1817
BseXI GCAGC 8 cut(s) 94, 97, 259, 410, 2219, 2749, 3195, 3211
BseYI CCCAGC 1 cut(s) 1334
BsgI GTGCAG 2 cut(s) 417, 3210
Bsh1236I CGCG 2 cut(s) 1113, 2729
BshFI GGCC 7 cut(s) 297, 1090, 1110, 1479, 1486, 1500, 3466
BshNI GGYRCC 1 cut(s) 1034
BsiHKAI GWGCWC 5 cut(s) 1457, 1817, 2203, 2278, 2848
BsiSI CCGG 4 cut(s) 430, 614, 2038, 2204
BslFI GGGAC 4 cut(s) 326, 517, 829, 2098
BslI CCNNNNNNNGG 6 cut(s) 812, 1174, 1520, 2777, 3348, 3982
BsmAI GTCTC 6 cut(s) 261, 707, 1217, 1584, 2943, 3045
BsmBI CGTCTC 2 cut(s) 1217, 2943
BsmFI GGGAC 4 cut(s) 326, 517, 829, 2098
BsmI GAATGC 5 cut(s) 478, 899, 1233, 2069, 3872
BsnI GGCC 7 cut(s) 297, 1090, 1110, 1479, 1486, 1500, 3466
Bso31I GGTCTC 3 cut(s) 707, 1584, 3045
Bsp1286I GDGCHC 6 cut(s) 1068, 1457, 1817, 2203, 2278, 2848
Bsp13I TCCGGA 1 cut(s) 613
Bsp19I CCATGG 1 cut(s) 2232
BspACI CCGC 9 cut(s) 517, 718, 1111, 1655, 1953, 2094, 2426, 3540, 3626
BspANI GGCC 7 cut(s) 297, 1090, 1110, 1479, 1486, 1500, 3466
BspCNI CTCAG 8 cut(s) 22, 1077, 1227, 1699, 2122, 2769, 3571, 3600
BspEI TCCGGA 1 cut(s) 613
BspFNI CGCG 2 cut(s) 1113, 2729
BspHI TCATGA 5 cut(s) 982, 1237, 1921, 1966, 3471
BspLI GGNNCC 5 cut(s) 314, 505, 1036, 2350, 2815
BspMAI CTGCAG 1 cut(s) 1618
BspPI GGATC 3 cut(s) 1420, 3538, 3600
BspQI GCTCTTC 1 cut(s) 3204
BspT107I GGYRCC 1 cut(s) 1034
BspTI CTTAAG 2 cut(s) 508, 1132
BspTNI GGTCTC 3 cut(s) 707, 1584, 3045
BsrDI GCAATG 6 cut(s) 48, 1875, 2124, 2439, 2960, 3092
BsrFI RCCGGY 1 cut(s) 2037
BssAI RCCGGY 1 cut(s) 2037
BssECI CCNNGG 8 cut(s) 379, 641, 1365, 1488, 1938, 2232, 3389, 3981
BssT1I CCWWGG 5 cut(s) 379, 641, 1488, 1938, 2232
Bst2UI CCWGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
Bst4CI ACNGT 8 cut(s) 492, 1042, 1697, 2059, 2173, 2257, 2356, 3937
Bst6I CTCTTC 3 cut(s) 264, 1707, 3204
BstAFI CTTAAG 2 cut(s) 508, 1132
BstAPI GCANNNNNTGC 1 cut(s) 1913
BstBAI YACGTR 2 cut(s) 1643, 1994
BstDSI CCRYGG 2 cut(s) 1365, 2232
BstF5I GGATG 5 cut(s) 792, 1770, 1948, 3769, 3855
BstFNI CGCG 2 cut(s) 1113, 2729
BstHHI GCGC 1 cut(s) 1115
BstMAI GTCTC 6 cut(s) 261, 707, 1217, 1584, 2943, 3045
BstMWI GCNNNNNNNGC 6 cut(s) 104, 1043, 1913, 2207, 2474, 3825
BstNI CCWGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
BstNSI RCATGY 6 cut(s) 593, 2560, 3092, 3378, 3576, 3697
BstSCI CCNGG 6 cut(s) 1408, 1513, 2678, 3168, 3388, 3981
BstSFI CTRYAG 1 cut(s) 1614
BstSLI GKGCMC 1 cut(s) 1817
BstSNI TACGTA 1 cut(s) 1994
BstUI CGCG 2 cut(s) 1113, 2729
BstV1I GCAGC 8 cut(s) 94, 97, 259, 410, 2219, 2749, 3195, 3211
BstX2I RGATCY 2 cut(s) 1412, 3530
BstYI RGATCY 2 cut(s) 1412, 3530
Bsu36I CCTNAGG 1 cut(s) 1707
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 7 cut(s) 297, 1090, 1110, 1479, 1486, 1500, 3466
BtgI CCRYGG 2 cut(s) 1365, 2232
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 5 cut(s) 792, 1770, 1948, 3769, 3855
BtsI GCAGTG 2 cut(s) 1450, 2210
BtsIMutI CAGTG 8 cut(s) 953, 1153, 1222, 1450, 2210, 2253, 2352, 2616
CaiI CAGNNNCTG 1 cut(s) 1046
CciI TCATGA 5 cut(s) 982, 1237, 1921, 1966, 3471
CfoI GCGC 1 cut(s) 1115
Cfr10I RCCGGY 1 cut(s) 2037
Cfr13I GGNCC 8 cut(s) 295, 313, 504, 1433, 1485, 2599, 3413, 3465
CseI GACGC 2 cut(s) 2585, 3230
CsiI ACCWGGT 1 cut(s) 1513
Csp6I GTAC 9 cut(s) 493, 638, 671, 853, 1991, 2243, 2414, 2725, 3386
CspCI CAANNNNNGTGG 2 cut(s) 2242, 2277
CviQI GTAC 9 cut(s) 493, 638, 671, 853, 1991, 2243, 2414, 2725, 3386
DrdI GACNNNNNNGTC 1 cut(s) 823
DriI GACNNNNNGTC 2 cut(s) 510, 2793
DseDI GACNNNNNNGTC 1 cut(s) 823
EaeI YGGCCR 1 cut(s) 1498
Eam1104I CTCTTC 3 cut(s) 264, 1707, 3204
Eam1105I GACNNNNNGTC 2 cut(s) 510, 2793
EarI CTCTTC 3 cut(s) 264, 1707, 3204
EciI GGCGGA 2 cut(s) 1670, 3641
Ecl136II GAGCTC 1 cut(s) 1455
Eco105I TACGTA 1 cut(s) 1994
Eco130I CCWWGG 5 cut(s) 379, 641, 1488, 1938, 2232
Eco147I AGGCCT 2 cut(s) 1090, 1479
Eco24I GRGCYC 2 cut(s) 1068, 1457
Eco31I GGTCTC 3 cut(s) 707, 1584, 3045
Eco32I GATATC 2 cut(s) 1139, 3334
Eco47I GGWCC 5 cut(s) 313, 504, 1433, 2599, 3413
Eco53kI GAGCTC 1 cut(s) 1455
Eco57I CTGAAG 4 cut(s) 1664, 2402, 3279, 3345
Eco72I CACGTG 1 cut(s) 1643
Eco81I CCTNAGG 1 cut(s) 1707
EcoICRI GAGCTC 1 cut(s) 1455
EcoO109I RGGNCCY 3 cut(s) 313, 504, 2599
EcoRII CCWGG 6 cut(s) 1408, 1513, 2678, 3168, 3388, 3981
EcoRV GATATC 2 cut(s) 1139, 3334
EcoT14I CCWWGG 5 cut(s) 379, 641, 1488, 1938, 2232
EcoT22I ATGCAT 5 cut(s) 480, 1886, 2053, 2832, 3094
EcoT38I GRGCYC 2 cut(s) 1068, 1457
ErhI CCWWGG 5 cut(s) 379, 641, 1488, 1938, 2232
Esp3I CGTCTC 2 cut(s) 1217, 2943
FaqI GGGAC 4 cut(s) 326, 517, 829, 2098
FauNDI CATATG 2 cut(s) 115, 766
FbaI TGATCA 2 cut(s) 211, 985
FokI GGATG 5 cut(s) 799, 1777, 1955, 3776, 3842
FriOI GRGCYC 2 cut(s) 1068, 1457
FspBI CTAG 8 cut(s) 1308, 1770, 1910, 1988, 2469, 2972, 3363, 3489
GlaI GCGC 1 cut(s) 1114
GsaI CCCAGC 1 cut(s) 1338
GsuI CTGGAG 2 cut(s) 2701, 3734
HaeIII GGCC 7 cut(s) 297, 1090, 1110, 1479, 1486, 1500, 3466
HapII CCGG 4 cut(s) 430, 614, 2038, 2204
HgaI GACGC 2 cut(s) 2585, 3230
HhaI GCGC 1 cut(s) 1115
Hin6I GCGC 1 cut(s) 1113
HinP1I GCGC 1 cut(s) 1113
HincII GTYRAC 2 cut(s) 2613, 2798
HindII GTYRAC 2 cut(s) 2613, 2798
HindIII AAGCTT 4 cut(s) 2021, 2690, 3124, 3397
HpaI GTTAAC 1 cut(s) 2613
HpaII CCGG 4 cut(s) 430, 614, 2038, 2204
HphI GGTGA 9 cut(s) 1739, 1757, 1958, 2146, 2668, 2792, 3089, 3152, 4016
Hpy166II GTNNAC 5 cut(s) 1815, 2613, 2662, 2676, 2798
Hpy8I GTNNAC 5 cut(s) 1815, 2613, 2662, 2676, 2798
Hpy99I CGWCG 1 cut(s) 414
HpyCH4III ACNGT 8 cut(s) 492, 1042, 1697, 2059, 2173, 2257, 2356, 3937
HpyCH4IV ACGT 5 cut(s) 412, 541, 1642, 1993, 3955
HpyF10VI GCNNNNNNNGC 6 cut(s) 104, 1043, 1913, 2207, 2474, 3825
HpySE526I ACGT 5 cut(s) 412, 541, 1642, 1993, 3955
HspAI GCGC 1 cut(s) 1113
Kpn2I TCCGGA 1 cut(s) 613
Ksp22I TGATCA 2 cut(s) 211, 985
KspAI GTTAAC 1 cut(s) 2613
LguI GCTCTTC 1 cut(s) 3204
LmnI GCTCC 6 cut(s) 776, 1657, 2206, 2273, 2917, 4018
Lsp1109I GCAGC 8 cut(s) 94, 97, 259, 410, 2219, 2749, 3195, 3211
MabI ACCWGGT 1 cut(s) 1513
MaeI CTAG 8 cut(s) 1308, 1770, 1910, 1988, 2469, 2972, 3363, 3489
MaeII ACGT 5 cut(s) 412, 541, 1642, 1993, 3955
MfeI CAATTG 2 cut(s) 839, 3775
MflI RGATCY 2 cut(s) 1412, 3530
MhlI GDGCHC 6 cut(s) 1068, 1457, 1817, 2203, 2278, 2848
MlsI TGGCCA 1 cut(s) 1500
MluI ACGCGT 1 cut(s) 2727
MluNI TGGCCA 1 cut(s) 1500
MlyI GAGTC 2 cut(s) 2485, 2494
MmeI TCCRAC 6 cut(s) 20, 310, 581, 1501, 1558, 3508
Mox20I TGGCCA 1 cut(s) 1500
Mph1103I ATGCAT 5 cut(s) 480, 1886, 2053, 2832, 3094
MroI TCCGGA 1 cut(s) 613
MroXI GAANNNNTTC 2 cut(s) 3294, 3433
MscI TGGCCA 1 cut(s) 1500
MslI CAYNNNNRTG 3 cut(s) 594, 969, 1146
Msp20I TGGCCA 1 cut(s) 1500
MspA1I CMGCKG 3 cut(s) 16, 689, 1574
MspCI CTTAAG 2 cut(s) 508, 1132
MspI CCGG 4 cut(s) 430, 614, 2038, 2204
MspR9I CCNGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
MunI CAATTG 2 cut(s) 839, 3775
Mva1269I GAATGC 5 cut(s) 478, 899, 1233, 2069, 3872
MvaI CCWGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
MvnI CGCG 2 cut(s) 1113, 2729
MwoI GCNNNNNNNGC 6 cut(s) 104, 1043, 1913, 2207, 2474, 3825
NcoI CCATGG 1 cut(s) 2232
NdeI CATATG 2 cut(s) 115, 766
NlaIV GGNNCC 5 cut(s) 314, 505, 1036, 2350, 2815
NmeAIII GCCGAG 1 cut(s) 2182
NmuCI GTSAC 7 cut(s) 187, 585, 1392, 1825, 3007, 3140, 3345
NsiI ATGCAT 5 cut(s) 480, 1886, 2053, 2832, 3094
NspI RCATGY 6 cut(s) 593, 2560, 3092, 3378, 3576, 3697
PagI TCATGA 5 cut(s) 982, 1237, 1921, 1966, 3471
PceI AGGCCT 2 cut(s) 1090, 1479
PciI ACATGT 4 cut(s) 589, 2556, 3374, 3693
PciSI GCTCTTC 1 cut(s) 3204
PctI GAATGC 5 cut(s) 478, 899, 1233, 2069, 3872
PdmI GAANNNNTTC 2 cut(s) 3294, 3433
PflMI CCANNNNNTGG 3 cut(s) 1174, 2777, 3982
PfoI TCCNGGA 1 cut(s) 3168
PleI GAGTC 2 cut(s) 2485, 2494
PmaCI CACGTG 1 cut(s) 1643
PmlI CACGTG 1 cut(s) 1643
PpsI GAGTC 2 cut(s) 2485, 2494
Ppu21I YACGTR 2 cut(s) 1643, 1994
PpuMI RGGWCCY 3 cut(s) 313, 504, 2599
PscI ACATGT 4 cut(s) 589, 2556, 3374, 3693
PshBI ATTAAT 3 cut(s) 821, 1244, 3062
Psp124BI GAGCTC 1 cut(s) 1457
Psp5II RGGWCCY 3 cut(s) 313, 504, 2599
Psp6I CCWGG 6 cut(s) 1408, 1513, 2678, 3168, 3388, 3981
PspCI CACGTG 1 cut(s) 1643
PspFI CCCAGC 1 cut(s) 1334
PspGI CCWGG 6 cut(s) 1408, 1513, 2678, 3168, 3388, 3981
PspN4I GGNNCC 5 cut(s) 314, 505, 1036, 2350, 2815
PspPI GGNCC 8 cut(s) 295, 313, 504, 1433, 1485, 2599, 3413, 3465
PspPPI RGGWCCY 3 cut(s) 313, 504, 2599
PstI CTGCAG 1 cut(s) 1618
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 2 cut(s) 1412, 3530
PvuII CAGCTG 3 cut(s) 16, 689, 1574
RsaI GTAC 9 cut(s) 494, 639, 672, 854, 1992, 2244, 2415, 2726, 3387
RsaNI GTAC 9 cut(s) 493, 638, 671, 853, 1991, 2243, 2414, 2725, 3386
RseI CAYNNNNRTG 3 cut(s) 594, 969, 1146
SacI GAGCTC 1 cut(s) 1457
SapI GCTCTTC 1 cut(s) 3204
Sau96I GGNCC 8 cut(s) 295, 313, 504, 1433, 1485, 2599, 3413, 3465
ScaI AGTACT 1 cut(s) 2244
SchI GAGTC 2 cut(s) 2485, 2494
ScrFI CCNGG 6 cut(s) 1410, 1515, 2680, 3170, 3390, 3983
SduI GDGCHC 6 cut(s) 1068, 1457, 1817, 2203, 2278, 2848
SexAI ACCWGGT 1 cut(s) 1513
SfcI CTRYAG 1 cut(s) 1614
SinI GGWCC 5 cut(s) 313, 504, 1433, 2599, 3413
SmiMI CAYNNNNRTG 3 cut(s) 594, 969, 1146
SmlI CTYRAG 5 cut(s) 508, 1132, 2524, 3072, 3498
SmoI CTYRAG 5 cut(s) 508, 1132, 2524, 3072, 3498
SnaBI TACGTA 1 cut(s) 1994
SpeI ACTAGT 1 cut(s) 1909
SseBI AGGCCT 2 cut(s) 1090, 1479
SsiI CCGC 9 cut(s) 517, 718, 1111, 1655, 1953, 2094, 2426, 3540, 3626
SspI AATATT 3 cut(s) 448, 531, 568
SspMI CTAG 8 cut(s) 1308, 1770, 1910, 1988, 2469, 2972, 3363, 3489
SstI GAGCTC 1 cut(s) 1457
StuI AGGCCT 2 cut(s) 1090, 1479
StyD4I CCNGG 6 cut(s) 1408, 1513, 2678, 3168, 3388, 3981
StyI CCWWGG 5 cut(s) 379, 641, 1488, 1938, 2232
TaaI ACNGT 8 cut(s) 492, 1042, 1697, 2059, 2173, 2257, 2356, 3937
TaiI ACGT 5 cut(s) 415, 544, 1645, 1996, 3958
TaqI TCGA 9 cut(s) 125, 409, 594, 1196, 1588, 1864, 2078, 2309, 4024
TaqII GACCGA 1 cut(s) 3069
TatI WGTACW 2 cut(s) 492, 2242
TauI GCSGC 3 cut(s) 721, 1113, 2429
TscAI CASTG 8 cut(s) 960, 1153, 1222, 1450, 2217, 2260, 2359, 2623
TseFI GTSAC 7 cut(s) 187, 585, 1392, 1825, 3007, 3140, 3345
TseI GCWGC 8 cut(s) 107, 110, 272, 398, 2207, 2762, 3183, 3224
Tsp45I GTSAC 7 cut(s) 187, 585, 1392, 1825, 3007, 3140, 3345
TspGWI ACGGA 5 cut(s) 383, 1382, 2166, 3364, 3525
TspRI CASTG 8 cut(s) 960, 1153, 1222, 1450, 2217, 2260, 2359, 2623
Van91I CCANNNNNTGG 3 cut(s) 1174, 2777, 3982
Vha464I CTTAAG 2 cut(s) 508, 1132
VneI GTGCAC 1 cut(s) 1813
VpaK11BI GGWCC 5 cut(s) 313, 504, 1433, 2599, 3413
VspI ATTAAT 3 cut(s) 821, 1244, 3062
XapI RAATTY 7 cut(s) 1328, 1542, 1793, 2774, 3164, 3665, 3848
XbaI TCTAGA 1 cut(s) 2971
XceI RCATGY 6 cut(s) 593, 2560, 3092, 3378, 3576, 3697
XmnI GAANNNNTTC 2 cut(s) 3294, 3433
XspI CTAG 8 cut(s) 1308, 1770, 1910, 1988, 2469, 2972, 3363, 3489
ZrmI AGTACT 1 cut(s) 2244
Zsp2I ATGCAT 5 cut(s) 480, 1886, 2053, 2832, 3094
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.