RLG00000023180

ABC transporter D family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006235
Physical Location & Seq
Reverse (-)
19512086 .. 19527996
15911 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023180

Sequence Viewer

Length: 4149 bp
ATGCATTCGCTTCAGCTGTTGCAATTAACTGAGCATGGTCGGAGTTTCATTGCATCAAGGAGGAAAACCTTGCTTCTTGCTACTGGTATTGTAGTTGCTGGTGGGGCTGCTGCATATGTTCAATCGAGATTAACCCATAAAAAGCACAATTCTTTTGGTCAATATAATGGGCTGAATGAAAATAAAGTGACAGAGAATGTCGTGGCGAATGATCATAAGAAAAAGAAACTTCCACAAAAGAGAGGGGGGTTGAAATCTCTTCAAGTCCTTGCTGCAATTCTTTTGTCTGAAATGGGCCAAATGGGTGCAAGGGACCTCTTATCTTTGGTCGGAATAGTGGTGTTGCGAACTGCTTTGAGCAACAGACTTGCGAAAGTCCAAGGGTTTTTATTCCGTGCAGCTTTTCTTCGACGTGTTCCATTATTTGTCCGGCTGATTTCTGAGAATATTCTATTATGTTTCCTTGCCTCAACTGTGCATTCAACTTCACAGTACATAACAGGGACCTTAAGTCTGCGGTTCAGAAAAATATTGACAAAACGTATCCATTCCCATTATTTTGAGAATATTGCATACTACAAAATGTCAAACGTCGACGGTCGGATAACTAATCCAGAACAGCGAATTGCAAGTGATGTACCAAGGTTCTGTTCAGAGTTGAGTGAAATCGTACAAGATGATTTAACAGCTGTTACTGATGGTCTCCTTTACTCTTGGCGGCTGTGTTCCTACGCCAGTCCTAAATATATATTCTGGATATTGGCATATGTATTGGGAGCAGGGGGGATGATTAGAAAGTTCTCTCCTCCTTTTGGGAAATTAATGTCCAAAGAACAACAATTGGAAGGGGAGTACCGACAGCTTCATTCACGATTAAGAACCCATGCAGAAAGTGTGGCATTCTATGGTGGAGAAAGTAGAGAGGAATCTCATATTCAGAAGAAGTTTAATACACTGGTTGGGCATCTGCATGTTGTCCTTCATGATCATTGGTGGTTTGGCATGATTCAAGACTTCCTGTTGAAGTATCTTGGTGCCACAGTTGCTGTTATATTGATTATTGAGCCCTTCTTTTCGGGCAGTCTCAGGCCCGACACTTCAACTTTAGGCCGCGCAGAGATGTTAAGCAACTTAAGATATCATACCAGTGTCATAATTTCACTTTTCCAGTCTATGGGAACTCTCGCTTCAAGTTCGAGAAAACTCAATCGTCTCAGTGGTTACGCTGATCGCATTCATGAATTAATGGTCATATCAAGAGAGCTAAGTGCTGTTGATGACAAATCTTCTGGGAGTAAAAATTGCTCTAGTGAGGCTGATTACATTGAATTTGCTGGGGTCAAGGTTGTTACCCCGACGGGTAATGTTTTGGTGGATAAATTGTCACTTAGGGTTGAACCAGGATCTAATCTCTTGATTACAGGTCCAAATGGCAGTGGAAAGAGCTCGCTTTTCCGAGTTTTAGGAGGCCTGTGGCCCTTGGTATCTGGCCATATTGTGAAACCTGGTGTTGGAACTGATCTCAACAAAGAAATTTTCTATGTTCCACAAAGACCATACACAGCTGTCGGAACACTTCGAGACCAGTTGATTTATCCTCTTACTGCAGATCAAGAGGTCAAACCACTTACACGTGAAGAAATGGCGGAGCTATTGAGAAATGTTGATCTTCAGTATTTATTAGACCGTTATCCACCTGAGGAAGAGATAAATTGGGGTGATGAATTATCTCTTGGTGAGCAACAAAGATTGGGGATGGCTAGACTTTTCTATCATAAGCCCAAATTTGCAATTCTTGATGAGTGCACAAGTGCTGTCACAACTGACATGGAGGAACGATTCTGTGCTAAAGTTCGAGCAATGGGAACATCATGCATTACTATCTCGCATCGCCCAGCGCTAGTTGCATTTCATGATGTAGTGCTGTCCTTGGATGGTGAAGGCGGTTGGAGTGTTCATGAGAAAAGGGAGGATTCTCTAGTACGTAATGAAGGTGGGAGAAGTATGTTGCAGCTTTCTGAAACGAACCGGCAGAGTGATGCAATGACAGTTCAGCGAGCATTCGCCTCGACCAAAAAGGATTCCGCAATCTCAAACTCAAAGTCCCAGTCGTACATTGCTGAGGTGATAGCAGTTTCTCCCTCTGCCGAGCATAATGTTACAGTTCCGTCTTTCCCACATCTCCAAAGTGCTCCCGCAGCACTGCCATTGAGAGCATCTGCCATGTTCAAAGTACTGATTCCCACTGTTATTGATAAACAAGGAGCACAACTGCTTGCAGTTGCTTTTCTCGTAGTATCGAGGACATGGATTTCTGATCGTATTGCTTCATTAAATGGAACCACTGTGAAGTTTGTTTTGGAACAAGATAAGGCATCATTTATTCATCTAATTGGTGTTAGCGTACTTCAGAGTGCGGCATCTTCTTTCATTGCACCTTCTATAAGGCACTTAAAAGCTAGGCTGGCTCTTGGGTGGAGGACTCGTTTGACTCAACATTTACTTAAAAACTACTTGAGAAATAATGCATTCTATAAGGTATTCAACATGGCAAGCAAAAACATAGACGCAGATCAGAGAGTTACACAGGACCTTGAAAAGTTAACCACTGACTTGTCGGGATTGGTTACTGGATTGGTAAAGCCATCTGTGGACATTCTTTGGTTCACCTGGAGAATGAAGCTTTTGACTGGTCGGAGAGGAGTAACTATATTGTACGCGTATATGTTACTGGGTCTTGGTTTGCTCAGGGCTGCTACCCCAGAATTTGGTGATTTGACAAGTCGTCAACAGCAACTTGAAGGAACCTTTAGGTTTATGCATGAAAGACTGCGTGCTCATGCTGAATCTGTTGCTTTCTTTGGGGGTGGTTATAGAGAGAAAGCTATGGTTGAATCAAAGTTCAAGGAGCTACTCCATCACTCCTCGTCTCTTTTGAAGAAGCAATGGTTATTCGGCATTCTAGATGATTTTATCACGAAACAACTCCCACATAATGTGACTTGGGGATTGAGCTTGCTATATGCCATTGAACATAAGGGAGACCGAGCATTAATATCTACTCAAGGTGAGCTGGCACATGCATTGCGTTTCTTGGCATCTGTGGTATCTCAAAGCTTTTTAGCTTTCGGTGACATTCTTGAATTGCATAGAAAATTCCTGGAACTCTCTGGCGGCATCAACAGGGTTTTTGAACTTGAAGAGCTTTTAGACGCTGCACAATCTGTGGTTGGCTATTCTGGGGATTCTGAAGCTGGTAACTCATCATCATCTGAGAGGGAAGGTTTTCAATTTGAAGATGCCATTAACTTCTCTGAAGTTGATATCATAACCCCGTCACAGAAATTGTTGGCTAGGAAATTAACATGTGATATAGTACCTGGGAAAAGCTTGCTTGTTACTGGTCCAAATGGGAGTGGAAAAAGTTCTGTGTTTAGAGTTCTTAGAGGTCTTTGGCCCATCATGAGTGGAAGAATCACTAGACCATCTCAGGATGTTAACGGAGTTAGTAGAGATGTTGGATCTGGTTGCGGAGTTTTTTATGTTCCTCAGCGACCATACACATGCTTGGGAACACTCAGGGATCAAATTATATATCCTCTCTCTTTTGATGAGGCAGAGATAAGGGCATTGAAGTTGTATCAAGAAGGTGGAAAATTTGCTGACAGCACCAACATTCTGGACATGCGTTTGAGAACTATTCTGGAGAATGTCCGATTAAGTTATCTTTTGGAAAGGGAGGAAGGTGGTTGGGATGCTAATCTCAATTGGGAGGACACTCTCTCTCTCGGAGAACAGCAGAGATTAGGCATGGCACGCCTATTTTTTCACAAACCAAAATTCGCCATCCTTGATGAATGCACCAATGCTACAAGTGTTGATGTTGAAGAACAACTCTATCGGCTTGCAAAAGACATGGGCATCACGGTTGTTACCTCCTCACAACGTCCTGCTCTAATACCATTCCATTCCCTGGAATTACGGCTTATTGATGGTGAGGACGCTTCGTGTGGTATTGTTTCGAGGTCTCATTTGCTTAATTTGCTCATGGGTAAGATCTTTACGAGGGAGAGGGTTCTTTGTGGAGAAGAGATCTTGCGCACGGTTGGTGCATTTGATGATTTGATTTTGCCAAGGCTGGATCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006629 GO:0008150 GO:0008152 GO:0009056 GO:0016042 GO:0044238 GO:0071704 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko02010 ko04146 map02010 map04146
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

1383

Amino Acids

154.3

Weight (kDa)

9.01

Isoelectric Point (pI)

44.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABC_membrane_2 PF06472 90 - 358 4.4e-88 ABC transporter transmembrane region 2
ABC_tran PF00005 459 - 604 7.5e-20 ABC transporter
ABC_membrane_2 PF06472 742 - 1008 4.6e-81 ABC transporter transmembrane region 2
ABC_tran PF00005 1120 - 1289 8.4e-16 ABC transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 4100
AccB1I GGYRCC 1 cut(s) 1034
AccB7I CCANNNNNTGG 3 cut(s) 1174, 2768, 3973
AccI GTMKAC 1 cut(s) 594
AccII CGCG 2 cut(s) 1113, 2720
AclWI GGATC 3 cut(s) 1411, 3529, 3591
AcoI YGGCCR 1 cut(s) 1489
AcsI RAATTY 7 cut(s) 1328, 1533, 1784, 2765, 3155, 3656, 3839
AcuI CTGAAG 4 cut(s) 1655, 2393, 3270, 3336
AcvI CACGTG 1 cut(s) 1634
AfeI AGCGCT 1 cut(s) 1899
AfiI CCNNNNNNNGG 5 cut(s) 812, 1174, 1511, 2768, 3973
AflII CTTAAG 2 cut(s) 508, 1132
AflIII ACRYGT 4 cut(s) 412, 1631, 2718, 3365
AhdI GACNNNNNGTC 2 cut(s) 510, 2784
AjiI CACGTC 1 cut(s) 413
AjnI CCWGG 6 cut(s) 1399, 1504, 2669, 3159, 3379, 3972
AjuI GAANNNNNNNTTGG 6 cut(s) 634, 666, 1716, 1748, 2342, 2374
Alw21I GWGCWC 5 cut(s) 1448, 1808, 2194, 2269, 2839
Alw26I GTCTC 7 cut(s) 707, 1088, 1217, 1575, 2934, 3036, 4032
Alw44I GTGCAC 1 cut(s) 1804
AlwI GGATC 3 cut(s) 1411, 3529, 3591
AlwNI CAGNNNCTG 1 cut(s) 1046
Aor51HI AGCGCT 1 cut(s) 1899
AoxI GGCC 7 cut(s) 295, 1088, 1108, 1468, 1475, 1489, 3455
ApaLI GTGCAC 1 cut(s) 1804
ApeKI GCWGC 8 cut(s) 107, 110, 272, 398, 2011, 2198, 2753, 3215
ApoI RAATTY 7 cut(s) 1328, 1533, 1784, 2765, 3155, 3656, 3839
ArsI GACNNNNNNTTYG 4 cut(s) 2087, 2093, 2119, 2125
AseI ATTAAT 3 cut(s) 821, 1244, 3053
Asp700I GAANNNNTTC 2 cut(s) 3285, 3424
AspLEI GCGC 3 cut(s) 1115, 1900, 4101
AspS9I GGNCC 9 cut(s) 295, 313, 504, 1089, 1424, 1476, 2590, 3404, 3456
AsuHPI GGTGA 9 cut(s) 1730, 1748, 1949, 2137, 2659, 2783, 3080, 3143, 4007
AvaII GGWCC 5 cut(s) 313, 504, 1424, 2590, 3404
AxyI CCTNAGG 1 cut(s) 1698
BaeGI GKGCMC 1 cut(s) 1808
BalI TGGCCA 1 cut(s) 1491
BanI GGYRCC 1 cut(s) 1034
BanII GRGCYC 2 cut(s) 1068, 1448
BbrPI CACGTG 1 cut(s) 1634
Bbv12I GWGCWC 5 cut(s) 1448, 1808, 2194, 2269, 2839
BbvCI CCTCAGC 2 cut(s) 2121, 3549
BbvI GCAGC 8 cut(s) 94, 97, 259, 410, 2023, 2210, 2740, 3202
BccI CCATC 9 cut(s) 692, 1750, 1928, 2653, 2925, 3467, 3493, 3854, 3986
BceAI ACGGC 1 cut(s) 3998
BcgI CGANNNNNNTGC 2 cut(s) 2049, 2083
BciT130I CCWGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
BciVI GTATCC 1 cut(s) 554
BclI TGATCA 2 cut(s) 211, 985
BcoDI GTCTC 7 cut(s) 707, 1088, 1217, 1575, 2934, 3036, 4032
BfaI CTAG 8 cut(s) 1308, 1761, 1901, 1979, 2460, 2963, 3354, 3480
BfmI CTRYAG 1 cut(s) 1605
BfoI RGCGCY 1 cut(s) 1901
BfrI CTTAAG 2 cut(s) 508, 1132
BfuI GTATCC 1 cut(s) 554
BglII AGATCT 2 cut(s) 4056, 4092
BmcAI AGTACT 1 cut(s) 2235
Bme1390I CCNGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
Bme18I GGWCC 5 cut(s) 313, 504, 1424, 2590, 3404
BmeRI GACNNNNNGTC 2 cut(s) 510, 2784
BmgBI CACGTC 1 cut(s) 413
BmgT120I GGNCC 9 cut(s) 295, 313, 504, 1089, 1424, 1476, 2590, 3404, 3456
BmiI GGNNCC 5 cut(s) 314, 505, 1036, 2341, 2806
BmrFI CCNGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
BmrI ACTGGG 2 cut(s) 2101, 2741
BmuI ACTGGG 2 cut(s) 2101, 2741
BpmI CTGGAG 2 cut(s) 2692, 3725
Bpu10I CCTNAGC 3 cut(s) 2121, 2747, 3549
BpuEI CTTGAG 2 cut(s) 2536, 3048
BsaAI YACGTR 2 cut(s) 1634, 1985
BsaBI GATNNNNATC 1 cut(s) 3759
BsaI GGTCTC 4 cut(s) 707, 1575, 3036, 4032
BsaJI CCNNGG 7 cut(s) 379, 641, 1479, 1929, 3380, 3972, 4133
BsaXI ACNNNNNCTCC 2 cut(s) 2470, 2500
Bsc4I CCNNNNNNNGG 5 cut(s) 812, 1174, 1511, 2768, 3973
Bse118I RCCGGY 1 cut(s) 2028
Bse21I CCTNAGG 1 cut(s) 1698
Bse3DI GCAATG 7 cut(s) 48, 1866, 2049, 2115, 2430, 2951, 3083
Bse8I GATNNNNATC 1 cut(s) 3759
BseBI CCWGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
BseDI CCNNGG 7 cut(s) 379, 641, 1479, 1929, 3380, 3972, 4133
BseGI GGATG 6 cut(s) 792, 1761, 1939, 3499, 3760, 3846
BseJI GATNNNNATC 1 cut(s) 3759
BseLI CCNNNNNNNGG 5 cut(s) 812, 1174, 1511, 2768, 3973
BseMI GCAATG 7 cut(s) 48, 1866, 2049, 2115, 2430, 2951, 3083
BseRI GAGGAG 4 cut(s) 795, 2715, 2914, 3928
BseSI GKGCMC 1 cut(s) 1808
BseXI GCAGC 8 cut(s) 94, 97, 259, 410, 2023, 2210, 2740, 3202
BseYI CCCAGC 2 cut(s) 1334, 1894
BsgI GTGCAG 2 cut(s) 417, 3201
Bsh1236I CGCG 2 cut(s) 1113, 2720
Bsh1285I CGRYCG 1 cut(s) 601
BshFI GGCC 7 cut(s) 297, 1090, 1110, 1470, 1477, 1491, 3457
BshNI GGYRCC 1 cut(s) 1034
BsiEI CGRYCG 1 cut(s) 601
BsiHKAI GWGCWC 5 cut(s) 1448, 1808, 2194, 2269, 2839
BsiSI CCGG 2 cut(s) 430, 2029
BslFI GGGAC 3 cut(s) 326, 517, 2089
BslI CCNNNNNNNGG 5 cut(s) 812, 1174, 1511, 2768, 3973
BsmAI GTCTC 7 cut(s) 707, 1088, 1217, 1575, 2934, 3036, 4032
BsmBI CGTCTC 2 cut(s) 1217, 2934
BsmFI GGGAC 3 cut(s) 326, 517, 2089
BsmI GAATGC 8 cut(s) 4, 478, 899, 1233, 2060, 2528, 2958, 3863
BsnI GGCC 7 cut(s) 297, 1090, 1110, 1470, 1477, 1491, 3457
Bso31I GGTCTC 4 cut(s) 707, 1575, 3036, 4032
Bsp1286I GDGCHC 6 cut(s) 1068, 1448, 1808, 2194, 2269, 2839
BspANI GGCC 7 cut(s) 297, 1090, 1110, 1470, 1477, 1491, 3457
BspFNI CGCG 2 cut(s) 1113, 2720
BspHI TCATGA 5 cut(s) 982, 1237, 1912, 1957, 3462
BspLI GGNNCC 5 cut(s) 314, 505, 1036, 2341, 2806
BspMAI CTGCAG 1 cut(s) 1609
BspPI GGATC 3 cut(s) 1411, 3529, 3591
BspQI GCTCTTC 1 cut(s) 3195
BspT107I GGYRCC 1 cut(s) 1034
BspTI CTTAAG 2 cut(s) 508, 1132
BspTNI GGTCTC 4 cut(s) 707, 1575, 3036, 4032
BsrDI GCAATG 7 cut(s) 48, 1866, 2049, 2115, 2430, 2951, 3083
BsrFI RCCGGY 1 cut(s) 2028
BssAI RCCGGY 1 cut(s) 2028
BssECI CCNNGG 7 cut(s) 379, 641, 1479, 1929, 3380, 3972, 4133
BssT1I CCWWGG 5 cut(s) 379, 641, 1479, 1929, 4133
Bst2UI CCWGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
Bst6I CTCTTC 4 cut(s) 264, 1698, 3195, 4083
BstAFI CTTAAG 2 cut(s) 508, 1132
BstBAI YACGTR 2 cut(s) 1634, 1985
BstF5I GGATG 6 cut(s) 792, 1761, 1939, 3499, 3760, 3846
BstFNI CGCG 2 cut(s) 1113, 2720
BstH2I RGCGCY 1 cut(s) 1901
BstHHI GCGC 3 cut(s) 1115, 1900, 4101
BstMAI GTCTC 7 cut(s) 707, 1088, 1217, 1575, 2934, 3036, 4032
BstMCI CGRYCG 1 cut(s) 601
BstMWI GCNNNNNNNGC 7 cut(s) 104, 1043, 1904, 2198, 2465, 3816, 4042
BstNI CCWGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
BstNSI RCATGY 5 cut(s) 974, 3083, 3369, 3567, 3688
BstSCI CCNGG 6 cut(s) 1399, 1504, 2669, 3159, 3379, 3972
BstSFI CTRYAG 1 cut(s) 1605
BstSLI GKGCMC 1 cut(s) 1808
BstSNI TACGTA 1 cut(s) 1985
BstUI CGCG 2 cut(s) 1113, 2720
BstV1I GCAGC 8 cut(s) 94, 97, 259, 410, 2023, 2210, 2740, 3202
BstX2I RGATCY 4 cut(s) 1403, 3521, 4056, 4092
BstXI CCANNNNNNTGG 1 cut(s) 3679
BstYI RGATCY 4 cut(s) 1403, 3521, 4056, 4092
Bsu36I CCTNAGG 1 cut(s) 1698
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 7 cut(s) 297, 1090, 1110, 1470, 1477, 1491, 3457
BtgZI GCGATG 1 cut(s) 1874
BtrI CACGTC 1 cut(s) 413
BtsCI GGATG 6 cut(s) 792, 1761, 1939, 3499, 3760, 3846
BtsI GCAGTG 2 cut(s) 1441, 2201
BtsIMutI CAGTG 8 cut(s) 953, 1153, 1222, 1441, 2201, 2244, 2343, 2607
CaiI CAGNNNCTG 1 cut(s) 1046
CciI TCATGA 5 cut(s) 982, 1237, 1912, 1957, 3462
CfoI GCGC 3 cut(s) 1115, 1900, 4101
Cfr10I RCCGGY 1 cut(s) 2028
Cfr13I GGNCC 9 cut(s) 295, 313, 504, 1089, 1424, 1476, 2590, 3404, 3456
CseI GACGC 3 cut(s) 2576, 3221, 4010
CsiI ACCWGGT 1 cut(s) 1504
CspCI CAANNNNNGTGG 2 cut(s) 2233, 2268
DriI GACNNNNNGTC 2 cut(s) 510, 2784
EaeI YGGCCR 1 cut(s) 1489
Eam1104I CTCTTC 4 cut(s) 264, 1698, 3195, 4083
Eam1105I GACNNNNNGTC 2 cut(s) 510, 2784
EarI CTCTTC 4 cut(s) 264, 1698, 3195, 4083
EciI GGCGGA 1 cut(s) 1661
Ecl136II GAGCTC 1 cut(s) 1446
Eco105I TACGTA 1 cut(s) 1985
Eco130I CCWWGG 5 cut(s) 379, 641, 1479, 1929, 4133
Eco147I AGGCCT 1 cut(s) 1470
Eco24I GRGCYC 2 cut(s) 1068, 1448
Eco31I GGTCTC 4 cut(s) 707, 1575, 3036, 4032
Eco32I GATATC 2 cut(s) 1139, 3325
Eco47I GGWCC 5 cut(s) 313, 504, 1424, 2590, 3404
Eco47III AGCGCT 1 cut(s) 1899
Eco53kI GAGCTC 1 cut(s) 1446
Eco57I CTGAAG 4 cut(s) 1655, 2393, 3270, 3336
Eco72I CACGTG 1 cut(s) 1634
Eco81I CCTNAGG 1 cut(s) 1698
EcoICRI GAGCTC 1 cut(s) 1446
EcoO109I RGGNCCY 3 cut(s) 313, 504, 2590
EcoRII CCWGG 6 cut(s) 1399, 1504, 2669, 3159, 3379, 3972
EcoRV GATATC 2 cut(s) 1139, 3325
EcoT14I CCWWGG 5 cut(s) 379, 641, 1479, 1929, 4133
EcoT22I ATGCAT 5 cut(s) 6, 1877, 2530, 2823, 3085
EcoT38I GRGCYC 2 cut(s) 1068, 1448
ErhI CCWWGG 5 cut(s) 379, 641, 1479, 1929, 4133
Esp3I CGTCTC 2 cut(s) 1217, 2934
FaqI GGGAC 3 cut(s) 326, 517, 2089
FauI CCCGC 1 cut(s) 2203
FauNDI CATATG 2 cut(s) 115, 766
FbaI TGATCA 2 cut(s) 211, 985
FblI GTMKAC 1 cut(s) 594
FokI GGATG 6 cut(s) 799, 1768, 1946, 3506, 3767, 3833
FriOI GRGCYC 2 cut(s) 1068, 1448
FspBI CTAG 8 cut(s) 1308, 1761, 1901, 1979, 2460, 2963, 3354, 3480
FspI TGCGCA 1 cut(s) 4100
GlaI GCGC 3 cut(s) 1114, 1899, 4100
GsaI CCCAGC 2 cut(s) 1338, 1898
GsuI CTGGAG 2 cut(s) 2692, 3725
HaeII RGCGCY 1 cut(s) 1901
HaeIII GGCC 7 cut(s) 297, 1090, 1110, 1470, 1477, 1491, 3457
HapII CCGG 2 cut(s) 430, 2029
HgaI GACGC 3 cut(s) 2576, 3221, 4010
HhaI GCGC 3 cut(s) 1115, 1900, 4101
Hin6I GCGC 3 cut(s) 1113, 1898, 4099
HinP1I GCGC 3 cut(s) 1113, 1898, 4099
HincII GTYRAC 4 cut(s) 595, 2604, 2789, 3499
HindII GTYRAC 4 cut(s) 595, 2604, 2789, 3499
HindIII AAGCTT 3 cut(s) 2681, 3115, 3388
HpaI GTTAAC 2 cut(s) 2604, 3499
HpaII CCGG 2 cut(s) 430, 2029
HphI GGTGA 9 cut(s) 1730, 1748, 1949, 2137, 2659, 2783, 3080, 3143, 4007
Hpy166II GTNNAC 7 cut(s) 595, 1806, 2604, 2653, 2667, 2789, 3499
Hpy8I GTNNAC 7 cut(s) 595, 1806, 2604, 2653, 2667, 2789, 3499
Hpy99I CGWCG 4 cut(s) 414, 596, 599, 1360
HpyCH4IV ACGT 6 cut(s) 412, 541, 591, 1633, 1984, 3946
HpyF10VI GCNNNNNNNGC 7 cut(s) 104, 1043, 1904, 2198, 2465, 3816, 4042
HpySE526I ACGT 6 cut(s) 412, 541, 591, 1633, 1984, 3946
HspAI GCGC 3 cut(s) 1113, 1898, 4099
Ksp22I TGATCA 2 cut(s) 211, 985
KspAI GTTAAC 2 cut(s) 2604, 3499
LguI GCTCTTC 1 cut(s) 3195
LmnI GCTCC 5 cut(s) 776, 1648, 2197, 2264, 2908
Lsp1109I GCAGC 8 cut(s) 94, 97, 259, 410, 2023, 2210, 2740, 3202
MabI ACCWGGT 1 cut(s) 1504
MaeI CTAG 8 cut(s) 1308, 1761, 1901, 1979, 2460, 2963, 3354, 3480
MaeII ACGT 6 cut(s) 412, 541, 591, 1633, 1984, 3946
MfeI CAATTG 2 cut(s) 839, 3766
MflI RGATCY 4 cut(s) 1403, 3521, 4056, 4092
MhlI GDGCHC 6 cut(s) 1068, 1448, 1808, 2194, 2269, 2839
MlsI TGGCCA 1 cut(s) 1491
MluI ACGCGT 1 cut(s) 2718
MluNI TGGCCA 1 cut(s) 1491
MlyI GAGTC 2 cut(s) 2476, 2485
MmeI TCCRAC 8 cut(s) 20, 310, 581, 1492, 1549, 1928, 2675, 3499
Mox20I TGGCCA 1 cut(s) 1491
Mph1103I ATGCAT 5 cut(s) 6, 1877, 2530, 2823, 3085
MroXI GAANNNNTTC 2 cut(s) 3285, 3424
MscI TGGCCA 1 cut(s) 1491
MslI CAYNNNNRTG 3 cut(s) 969, 1146, 3562
Msp20I TGGCCA 1 cut(s) 1491
MspA1I CMGCKG 3 cut(s) 16, 689, 1565
MspCI CTTAAG 2 cut(s) 508, 1132
MspI CCGG 2 cut(s) 430, 2029
MspR9I CCNGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
MunI CAATTG 2 cut(s) 839, 3766
Mva1269I GAATGC 8 cut(s) 4, 478, 899, 1233, 2060, 2528, 2958, 3863
MvaI CCWGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
MvnI CGCG 2 cut(s) 1113, 2720
MwoI GCNNNNNNNGC 7 cut(s) 104, 1043, 1904, 2198, 2465, 3816, 4042
NdeI CATATG 2 cut(s) 115, 766
NlaIV GGNNCC 5 cut(s) 314, 505, 1036, 2341, 2806
NmeAIII GCCGAG 1 cut(s) 2173
NmuCI GTSAC 6 cut(s) 187, 1383, 1816, 2998, 3131, 3336
NsbI TGCGCA 1 cut(s) 4100
NsiI ATGCAT 5 cut(s) 6, 1877, 2530, 2823, 3085
NspI RCATGY 5 cut(s) 974, 3083, 3369, 3567, 3688
PagI TCATGA 5 cut(s) 982, 1237, 1912, 1957, 3462
PceI AGGCCT 1 cut(s) 1470
PciI ACATGT 1 cut(s) 3365
PciSI GCTCTTC 1 cut(s) 3195
PctI GAATGC 8 cut(s) 4, 478, 899, 1233, 2060, 2528, 2958, 3863
PdmI GAANNNNTTC 2 cut(s) 3285, 3424
PflMI CCANNNNNTGG 3 cut(s) 1174, 2768, 3973
PfoI TCCNGGA 1 cut(s) 3159
PleI GAGTC 2 cut(s) 2476, 2485
PmaCI CACGTG 1 cut(s) 1634
PmlI CACGTG 1 cut(s) 1634
PpsI GAGTC 2 cut(s) 2476, 2485
Ppu21I YACGTR 2 cut(s) 1634, 1985
PpuMI RGGWCCY 3 cut(s) 313, 504, 2590
PscI ACATGT 1 cut(s) 3365
PshBI ATTAAT 3 cut(s) 821, 1244, 3053
Psp124BI GAGCTC 1 cut(s) 1448
Psp5II RGGWCCY 3 cut(s) 313, 504, 2590
Psp6I CCWGG 6 cut(s) 1399, 1504, 2669, 3159, 3379, 3972
PspCI CACGTG 1 cut(s) 1634
PspFI CCCAGC 2 cut(s) 1334, 1894
PspGI CCWGG 6 cut(s) 1399, 1504, 2669, 3159, 3379, 3972
PspN4I GGNNCC 5 cut(s) 314, 505, 1036, 2341, 2806
PspPI GGNCC 9 cut(s) 295, 313, 504, 1089, 1424, 1476, 2590, 3404, 3456
PspPPI RGGWCCY 3 cut(s) 313, 504, 2590
PstI CTGCAG 1 cut(s) 1609
PstNI CAGNNNCTG 1 cut(s) 1046
PsuI RGATCY 4 cut(s) 1403, 3521, 4056, 4092
PvuII CAGCTG 3 cut(s) 16, 689, 1565
RseI CAYNNNNRTG 3 cut(s) 969, 1146, 3562
SacI GAGCTC 1 cut(s) 1448
SalI GTCGAC 1 cut(s) 593
SapI GCTCTTC 1 cut(s) 3195
Sau96I GGNCC 9 cut(s) 295, 313, 504, 1089, 1424, 1476, 2590, 3404, 3456
ScaI AGTACT 1 cut(s) 2235
SchI GAGTC 2 cut(s) 2476, 2485
ScrFI CCNGG 6 cut(s) 1401, 1506, 2671, 3161, 3381, 3974
SduI GDGCHC 6 cut(s) 1068, 1448, 1808, 2194, 2269, 2839
SexAI ACCWGGT 1 cut(s) 1504
SfcI CTRYAG 1 cut(s) 1605
SgrDI CGTCGACG 1 cut(s) 593
SinI GGWCC 5 cut(s) 313, 504, 1424, 2590, 3404
SmiMI CAYNNNNRTG 3 cut(s) 969, 1146, 3562
SmlI CTYRAG 4 cut(s) 508, 1132, 2515, 3063
SmoI CTYRAG 4 cut(s) 508, 1132, 2515, 3063
SnaBI TACGTA 1 cut(s) 1985
SseBI AGGCCT 1 cut(s) 1470
SspI AATATT 3 cut(s) 448, 531, 568
SspMI CTAG 8 cut(s) 1308, 1761, 1901, 1979, 2460, 2963, 3354, 3480
SstI GAGCTC 1 cut(s) 1448
StuI AGGCCT 1 cut(s) 1470
StyD4I CCNGG 6 cut(s) 1399, 1504, 2669, 3159, 3379, 3972
StyI CCWWGG 5 cut(s) 379, 641, 1479, 1929, 4133
TaiI ACGT 6 cut(s) 415, 544, 594, 1636, 1987, 3949
TaqI TCGA 9 cut(s) 125, 409, 594, 1196, 1579, 1855, 2069, 2300, 4022
TaqII GACCGA 1 cut(s) 3060
TatI WGTACW 2 cut(s) 492, 2233
TauI GCSGC 4 cut(s) 721, 1113, 2420, 3177
TscAI CASTG 8 cut(s) 960, 1153, 1222, 1441, 2208, 2251, 2350, 2614
TseFI GTSAC 6 cut(s) 187, 1383, 1816, 2998, 3131, 3336
TseI GCWGC 8 cut(s) 107, 110, 272, 398, 2011, 2198, 2753, 3215
Tsp45I GTSAC 6 cut(s) 187, 1383, 1816, 2998, 3131, 3336
TspGWI ACGGA 3 cut(s) 383, 2157, 3516
TspRI CASTG 8 cut(s) 960, 1153, 1222, 1441, 2208, 2251, 2350, 2614
Van91I CCANNNNNTGG 3 cut(s) 1174, 2768, 3973
Vha464I CTTAAG 2 cut(s) 508, 1132
VneI GTGCAC 1 cut(s) 1804
VpaK11BI GGWCC 5 cut(s) 313, 504, 1424, 2590, 3404
VspI ATTAAT 3 cut(s) 821, 1244, 3053
XapI RAATTY 7 cut(s) 1328, 1533, 1784, 2765, 3155, 3656, 3839
XbaI TCTAGA 1 cut(s) 2962
XceI RCATGY 5 cut(s) 974, 3083, 3369, 3567, 3688
XmiI GTMKAC 1 cut(s) 594
XmnI GAANNNNTTC 2 cut(s) 3285, 3424
XspI CTAG 8 cut(s) 1308, 1761, 1901, 1979, 2460, 2963, 3354, 3480
ZrmI AGTACT 1 cut(s) 2235
Zsp2I ATGCAT 5 cut(s) 6, 1877, 2530, 2823, 3085
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.