Rorug03G0214800

ABC transporter D family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0006235
Physical Location & Seq
Forward (+)
19431371 .. 19432248
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0214800.1

Sequence Viewer

Length: 660 bp
ATGGCGGACGAGGTTATTCTATTGAACGCTTATGCGAGCGTGTTTGGGATGAGGGTCAGAGTAGCTCTGGCCGAGAAGGGAATCAAATATGACTACAGAGAAGAAGACCTGAGGAACAAGAGCCAACTGCTTCTTAAGATGAACCCGGTCCACAAGAAGATCCCGGTGCTCATCCATAATGGCAAACCAGTCTGTGAATCGCTCATCATTGTGCATTATATTGATGAGGTATGGAAGGATAAGGCTCCTCTGCTTCCCTCTGATCCTTACCAGAGAGCCCAGGCCAGATTCTGGGCCGATTTCATTGATAAGAAGTTATATGATGCAATCAGGAAGATATGGCCTGCAAAAGGAGAAGAGCAGGAGGCAGGAAAGAAGGAATTCATTGAAGTCCTGAAGGTGTTGGAAGGAGAGCTTGGGGGCAAGCCTTATTTCATGGGTGAGAGATTTGGGTTCCTGGACATTGCTCTCATCACATTCTACAGCTGGTTTCATGCTTGTGAGACACTTGGAAACTTCAGTATAGAGGCCGAGTGCCCCAAGCTGATTTCATGGGCCAAGAGATGCTTGCAGAAGGAGAGTGTTTCGAAGTCTCTTGCTGACCCGAAAAAGGTTTATGAGAATCTTCTTGAGATGCAGAAGAGGCTTGGTGTGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006629 GO:0008150 GO:0008152 GO:0009056 GO:0016042 GO:0044238 GO:0071704 GO:1901575
KEGG Pathways
Metabolic & Signaling
ko02010 ko04146 map02010 map04146
Pfam Domains
Protein Families
ABC_membrane_2 ABC_tran

Protein Analysis

219

Amino Acids

25.31

Weight (kDa)

8.21

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 5 - 76 5.6e-19 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 7 - 76 2.8e-15 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 13 - 76 2e-13 Glutathione S-transferase, N-terminal domain
GST_C PF00043 116 - 192 7.3e-08 Glutathione S-transferase, C-terminal domain
GST_C_2 PF13410 121 - 188 3.2e-10 Glutathione S-transferase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 291
AciI CCGC 1 cut(s) 5
AclWI GGATC 2 cut(s) 154, 257
AcoI YGGCCR 1 cut(s) 69
AcsI RAATTY 1 cut(s) 380
AcuI CTGAAG 2 cut(s) 416, 502
AfiI CCNNNNNNNGG 3 cut(s) 291, 350, 610
AflII CTTAAG 1 cut(s) 134
AgsI TTSAA 2 cut(s) 25, 389
AjnI CCWGG 2 cut(s) 279, 456
AjuI GAANNNNNNNTTGG 2 cut(s) 399, 431
AluBI AGCT 4 cut(s) 65, 415, 486, 544
AluI AGCT 4 cut(s) 65, 415, 486, 544
Alw21I GWGCWC 1 cut(s) 171
Alw26I GTCTC 2 cut(s) 497, 597
AlwI GGATC 2 cut(s) 154, 257
AlwNI CAGNNNCTG 1 cut(s) 291
AoxI GGCC 6 cut(s) 69, 282, 294, 341, 528, 555
ApoI RAATTY 1 cut(s) 380
Asp700I GAANNNNTTC 1 cut(s) 380
AspS9I GGNCC 3 cut(s) 148, 294, 555
AsuC2I CCSGG 2 cut(s) 146, 164
AsuHPI GGTGA 1 cut(s) 452
AsuII TTCGAA 1 cut(s) 587
AvaII GGWCC 1 cut(s) 148
AxyI CCTNAGG 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 539
BanII GRGCYC 1 cut(s) 280
BbsI GAAGAC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 171
BciT130I CCWGG 2 cut(s) 281, 458
BcnI CCSGG 2 cut(s) 146, 164
BcoDI GTCTC 2 cut(s) 497, 597
BfmI CTRYAG 2 cut(s) 94, 481
BfrI CTTAAG 1 cut(s) 134
Bme1390I CCNGG 4 cut(s) 146, 164, 281, 458
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 148, 294, 555
BmiI GGNNCC 2 cut(s) 246, 455
BmrFI CCNGG 4 cut(s) 146, 164, 281, 458
BmsI GCATC 3 cut(s) 313, 554, 624
BpiI GAAGAC 1 cut(s) 111
Bpu14I TTCGAA 1 cut(s) 587
BpuEI CTTGAG 1 cut(s) 650
BpuMI CCSGG 2 cut(s) 146, 164
BsaJI CCNNGG 1 cut(s) 279
Bsc4I CCNNNNNNNGG 3 cut(s) 291, 350, 610
Bse1I ACTGG 1 cut(s) 188
Bse21I CCTNAGG 1 cut(s) 110
Bse3DI GCAATG 1 cut(s) 462
BseBI CCWGG 2 cut(s) 281, 458
BseDI CCNNGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 54, 171
BseLI CCNNNNNNNGG 3 cut(s) 291, 350, 610
BseMI GCAATG 1 cut(s) 462
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 188
BseRI GAGGAG 1 cut(s) 237
BseSI GKGCMC 1 cut(s) 539
BshFI GGCC 6 cut(s) 71, 284, 296, 343, 530, 557
BsiHKAI GWGCWC 1 cut(s) 171
BsiSI CCGG 2 cut(s) 146, 164
BslI CCNNNNNNNGG 3 cut(s) 291, 350, 610
BsmAI GTCTC 2 cut(s) 497, 597
BsnI GGCC 6 cut(s) 71, 284, 296, 343, 530, 557
Bsp119I TTCGAA 1 cut(s) 587
Bsp1286I GDGCHC 3 cut(s) 171, 280, 539
Bsp143I GATC 2 cut(s) 159, 262
BspACI CCGC 1 cut(s) 5
BspANI GGCC 6 cut(s) 71, 284, 296, 343, 530, 557
BspCNI CTCAG 1 cut(s) 102
BspLI GGNNCC 2 cut(s) 246, 455
BspPI GGATC 2 cut(s) 154, 257
BspQI GCTCTTC 1 cut(s) 351
BspT104I TTCGAA 1 cut(s) 587
BspTI CTTAAG 1 cut(s) 134
BsrDI GCAATG 1 cut(s) 462
BsrI ACTGG 1 cut(s) 188
BssECI CCNNGG 1 cut(s) 279
BssMI GATC 2 cut(s) 159, 262
Bst2UI CCWGG 2 cut(s) 281, 458
Bst6I CTCTTC 2 cut(s) 351, 635
BstAFI CTTAAG 1 cut(s) 134
BstBI TTCGAA 1 cut(s) 587
BstC8I GCNNGC 4 cut(s) 37, 345, 425, 569
BstDEI CTNAG 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 54, 171
BstKTI GATC 2 cut(s) 162, 265
BstMAI GTCTC 2 cut(s) 497, 597
BstMBI GATC 2 cut(s) 159, 262
BstMWI GCNNNNNNNGC 1 cut(s) 643
BstNI CCWGG 2 cut(s) 281, 458
BstSCI CCNGG 4 cut(s) 144, 162, 279, 456
BstSFI CTRYAG 2 cut(s) 94, 481
BstSLI GKGCMC 1 cut(s) 539
BstV2I GAAGAC 1 cut(s) 111
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
Bsu36I CCTNAGG 1 cut(s) 110
BsuRI GGCC 6 cut(s) 71, 284, 296, 343, 530, 557
BtsCI GGATG 2 cut(s) 54, 171
Cac8I GCNNGC 4 cut(s) 37, 345, 425, 569
CaiI CAGNNNCTG 1 cut(s) 291
Cfr13I GGNCC 3 cut(s) 148, 294, 555
CviAII CATG 3 cut(s) 436, 494, 552
DdeI CTNAG 1 cut(s) 110
DpnI GATC 2 cut(s) 161, 264
DpnII GATC 2 cut(s) 159, 262
EaeI YGGCCR 1 cut(s) 69
Eam1104I CTCTTC 2 cut(s) 351, 635
EarI CTCTTC 2 cut(s) 351, 635
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 280
Eco47I GGWCC 1 cut(s) 148
Eco57I CTGAAG 2 cut(s) 416, 502
Eco81I CCTNAGG 1 cut(s) 110
EcoNI CCTNNNNNAGG 1 cut(s) 348
EcoRI GAATTC 1 cut(s) 380
EcoRII CCWGG 2 cut(s) 279, 456
EcoT38I GRGCYC 1 cut(s) 280
FaeI CATG 3 cut(s) 439, 497, 555
FalI AAGNNNNNCTT 4 cut(s) 399, 431, 551, 583
FatI CATG 3 cut(s) 435, 493, 551
FokI GGATG 2 cut(s) 61, 158
FriOI GRGCYC 1 cut(s) 280
HaeIII GGCC 6 cut(s) 71, 284, 296, 343, 530, 557
HapII CCGG 2 cut(s) 146, 164
Hin1II CATG 3 cut(s) 439, 497, 555
HinfI GANTC 4 cut(s) 81, 197, 288, 622
HpaII CCGG 2 cut(s) 146, 164
HphI GGTGA 1 cut(s) 452
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 59, 262
Hpy188III TCNNGA 3 cut(s) 331, 394, 629
Hpy8I GTNNAC 1 cut(s) 151
HpyAV CCTTC 6 cut(s) 70, 229, 370, 391, 401, 568
HpyCH4V TGCA 5 cut(s) 214, 326, 347, 571, 637
HpyF10VI GCNNNNNNNGC 1 cut(s) 643
HpyF3I CTNAG 1 cut(s) 110
Hsp92II CATG 3 cut(s) 439, 497, 555
Kzo9I GATC 2 cut(s) 159, 262
LguI GCTCTTC 1 cut(s) 351
LmnI GCTCC 1 cut(s) 250
LweI GCATC 3 cut(s) 313, 554, 624
MalI GATC 2 cut(s) 161, 264
MboI GATC 2 cut(s) 159, 262
MboII GAAGA 7 cut(s) 113, 116, 169, 346, 368, 617, 652
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 3 cut(s) 171, 280, 539
MluCI AATT 1 cut(s) 380
MmeI TCCRAC 1 cut(s) 384
MnlI CCTC 9 cut(s) 4, 45, 105, 220, 258, 268, 358, 520, 636
MroXI GAANNNNTTC 1 cut(s) 380
MseI TTAA 1 cut(s) 135
MslI CAYNNNNRTG 2 cut(s) 209, 498
MspA1I CMGCKG 1 cut(s) 486
MspCI CTTAAG 1 cut(s) 134
MspI CCGG 2 cut(s) 146, 164
MspR9I CCNGG 4 cut(s) 146, 164, 281, 458
MvaI CCWGG 2 cut(s) 281, 458
MwoI GCNNNNNNNGC 1 cut(s) 643
NciI CCSGG 2 cut(s) 146, 164
NdeII GATC 2 cut(s) 159, 262
NlaIII CATG 3 cut(s) 439, 497, 555
NlaIV GGNNCC 2 cut(s) 246, 455
NmeAIII GCCGAG 2 cut(s) 97, 556
NspV TTCGAA 1 cut(s) 587
PciSI GCTCTTC 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 380
PfeI GAWTC 4 cut(s) 81, 197, 288, 622
PflMI CCANNNNNTGG 1 cut(s) 291
PfoI TCCNGGA 1 cut(s) 456
Psp6I CCWGG 2 cut(s) 279, 456
PspGI CCWGG 2 cut(s) 279, 456
PspN4I GGNNCC 2 cut(s) 246, 455
PspPI GGNCC 3 cut(s) 148, 294, 555
PstNI CAGNNNCTG 1 cut(s) 291
PsuI RGATCY 1 cut(s) 159
PvuII CAGCTG 1 cut(s) 486
RseI CAYNNNNRTG 2 cut(s) 209, 498
SapI GCTCTTC 1 cut(s) 351
SaqAI TTAA 1 cut(s) 135
Sau3AI GATC 2 cut(s) 159, 262
Sau96I GGNCC 3 cut(s) 148, 294, 555
ScrFI CCNGG 4 cut(s) 146, 164, 281, 458
SduI GDGCHC 3 cut(s) 171, 280, 539
SetI ASST 9 cut(s) 15, 67, 111, 231, 402, 417, 488, 546, 615
SfaNI GCATC 3 cut(s) 313, 554, 624
SfcI CTRYAG 2 cut(s) 94, 481
SfuI TTCGAA 1 cut(s) 587
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 2 cut(s) 209, 498
SmlI CTYRAG 2 cut(s) 134, 629
SmoI CTYRAG 2 cut(s) 134, 629
Sse9I AATT 1 cut(s) 380
SsiI CCGC 1 cut(s) 5
StyD4I CCNGG 4 cut(s) 144, 162, 279, 456
TaqI TCGA 1 cut(s) 587
TasI AATT 1 cut(s) 380
TfiI GAWTC 4 cut(s) 81, 197, 288, 622
Tru1I TTAA 1 cut(s) 135
Tru9I TTAA 1 cut(s) 135
TspDTI ATGAA 6 cut(s) 155, 292, 373, 424, 482, 540
Van91I CCANNNNNTGG 1 cut(s) 291
Vha464I CTTAAG 1 cut(s) 134
VpaK11BI GGWCC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 348
XapI RAATTY 1 cut(s) 380
XmnI GAANNNNTTC 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.