pycom02g21620

Copper transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr2
OG0015908
Physical Location & Seq
Reverse (-)
19872354 .. 19874802
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 360 bp
ATGCAAGCTTCTACTTGTGGAAATTGCAAATACAACATTTACAAGTGGAGAAGATTATCGCTACAGCTTTCTTGTAATCCCAAATACCCTAATATGGCTTCTCAGACCACTACAGTCCTCAAGGTTGGTATGTCATGCCAAGGCTGTGTTGGGGCCGTCAAACGGGTTCTTGGCAAACTTGAAGGTGTAGAATCATATGACATTGATTTCGACGCTCAGAAGGTGACAGTGAAAAGCAATTTACCACCCGAGACAGTGCTGCAAACTGTTTCCAAAACTGGCAAGAAGACTGCTTATTGGGAAGCAGAAGCATCAGCAGAACCCGAAGCAAAGCCCGCAGAAACTGTGGCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04978 map04978
Pfam Domains
Protein Families
HMA

Protein Analysis

120

Amino Acids

12.91

Weight (kDa)

8.81

Isoelectric Point (pI)

39.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HMA PF00403 40 - 96 2.9e-18 Heavy-metal-associated domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015908)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G66240
fragaria_vesca FvH4_7g05820 FvH4_7g05820
malus_domestica MD02G1255400.v1.1 MD07G1066200.v1.1
prunus_persica Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.1G523200_v2.0.a1 Prupe.2G083400_v2.0.a1
pyrus_communis pycom02g21620
rosa_multiflora Rmu_co8296235.1_g000001
rosa_roxburghii Rroxscaffold_4G00317880
rosa_rugosa Rorug01G0102100 Rorug01G0102300
rosa_samantha Rh1DG134500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 336
AfiI CCNNNNNNNGG 2 cut(s) 94, 162
AgsI TTSAA 1 cut(s) 182
AluBI AGCT 2 cut(s) 8, 67
AluI AGCT 2 cut(s) 8, 67
Alw26I GTCTC 1 cut(s) 245
AlwNI CAGNNNCTG 1 cut(s) 344
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 1 cut(s) 153
ApeKI GCWGC 3 cut(s) 259, 350, 353
ArsI GACNNNNNNTTYG 2 cut(s) 191, 223
AspS9I GGNCC 1 cut(s) 153
AsuHPI GGTGA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 248
BbsI GAAGAC 1 cut(s) 293
BbvI GCAGC 3 cut(s) 246, 337, 340
BceAI ACGGC 1 cut(s) 140
BcoDI GTCTC 1 cut(s) 245
BfmI CTRYAG 2 cut(s) 62, 111
BisI GCNGC 3 cut(s) 260, 351, 354
BlsI GCNGC 3 cut(s) 261, 352, 355
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 153
BmiI GGNNCC 1 cut(s) 154
BmsI GCATC 1 cut(s) 320
BpiI GAAGAC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 94, 162
Bse1I ACTGG 1 cut(s) 283
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 94, 162
BseMII CTCAG 2 cut(s) 116, 230
BseNI ACTGG 1 cut(s) 283
BseXI GCAGC 3 cut(s) 246, 337, 340
BshFI GGCC 1 cut(s) 155
BsiHKCI CYCGRG 1 cut(s) 248
BslI CCNNNNNNNGG 2 cut(s) 94, 162
BsmAI GTCTC 1 cut(s) 245
BsnI GGCC 1 cut(s) 155
BsoBI CYCGRG 1 cut(s) 248
BspACI CCGC 1 cut(s) 336
BspANI GGCC 1 cut(s) 155
BspCNI CTCAG 2 cut(s) 115, 229
BspLI GGNNCC 1 cut(s) 154
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 5 cut(s) 115, 229, 256, 268, 346
BstC8I GCNNGC 2 cut(s) 6, 336
BstDEI CTNAG 3 cut(s) 102, 216, 357
BstMAI GTCTC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 335
BstSFI CTRYAG 2 cut(s) 62, 111
BstV1I GCAGC 3 cut(s) 246, 337, 340
BstV2I GAAGAC 1 cut(s) 293
BsuRI GGCC 1 cut(s) 155
BtsIMutI CAGTG 2 cut(s) 234, 261
Cac8I GCNNGC 2 cut(s) 6, 336
CaiI CAGNNNCTG 1 cut(s) 344
Cfr13I GGNCC 1 cut(s) 153
CseI GACGC 1 cut(s) 221
CviAII CATG 1 cut(s) 135
CviJI RGCY 7 cut(s) 8, 67, 98, 144, 155, 334, 350
CviKI_1 RGCY 7 cut(s) 8, 67, 98, 144, 155, 334, 350
DdeI CTNAG 3 cut(s) 102, 216, 357
Eco130I CCWWGG 1 cut(s) 139
Eco88I CYCGRG 1 cut(s) 248
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 1 cut(s) 138
FaiI YATR 5 cut(s) 95, 131, 136, 196, 198
FatI CATG 1 cut(s) 134
FauI CCCGC 1 cut(s) 343
FauNDI CATATG 1 cut(s) 196
Fnu4HI GCNGC 3 cut(s) 260, 351, 354
Fsp4HI GCNGC 3 cut(s) 260, 351, 354
GluI GCNGC 3 cut(s) 260, 351, 354
HaeIII GGCC 1 cut(s) 155
HgaI GACGC 1 cut(s) 221
Hin1II CATG 1 cut(s) 138
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 1 cut(s) 191
HphI GGTGA 1 cut(s) 235
Hpy188I TCNGA 2 cut(s) 105, 219
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 176, 214
HpyCH4III ACNGT 5 cut(s) 115, 229, 256, 268, 346
HpyCH4V TGCA 3 cut(s) 4, 27, 262
HpyF10VI GCNNNNNNNGC 1 cut(s) 335
HpyF3I CTNAG 3 cut(s) 102, 216, 357
Hsp92II CATG 1 cut(s) 138
LpnPI CCDG 1 cut(s) 264
Lsp1109I GCAGC 3 cut(s) 246, 337, 340
LweI GCATC 1 cut(s) 320
MaeIII GTNAC 1 cut(s) 223
MboII GAAGA 2 cut(s) 63, 298
MluCI AATT 2 cut(s) 22, 238
MnlI CCTC 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 335
NdeI CATATG 1 cut(s) 196
NlaIII CATG 1 cut(s) 138
NlaIV GGNNCC 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 223
PfeI GAWTC 1 cut(s) 191
PkrI GCNGC 3 cut(s) 261, 352, 355
PspN4I GGNNCC 1 cut(s) 154
PspPI GGNCC 1 cut(s) 153
PstNI CAGNNNCTG 1 cut(s) 344
SatI GCNGC 3 cut(s) 260, 351, 354
Sau96I GGNCC 1 cut(s) 153
SetI ASST 5 cut(s) 10, 69, 126, 187, 225
SfaNI GCATC 1 cut(s) 320
SfcI CTRYAG 2 cut(s) 62, 111
SmlI CTYRAG 1 cut(s) 119
SmoI CTYRAG 1 cut(s) 119
Sse9I AATT 2 cut(s) 22, 238
SsiI CCGC 1 cut(s) 336
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 5 cut(s) 115, 229, 256, 268, 346
TaqI TCGA 1 cut(s) 210
TasI AATT 2 cut(s) 22, 238
TfiI GAWTC 1 cut(s) 191
TscAI CASTG 2 cut(s) 234, 261
TseFI GTSAC 1 cut(s) 223
TseI GCWGC 3 cut(s) 259, 350, 353
Tsp45I GTSAC 1 cut(s) 223
TspRI CASTG 2 cut(s) 234, 261
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.