Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013050

Physical Location & Seq

Genomic Coordinates Reverse (-)

170458 .. 174391

Gene Structure 3934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00180.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGGTGAAGACAGACGTACAGAAAGTACATATGAAGAAAAAATTGGGATTTTGGAGGGTTCTCACTCATCTCAGGATACAGCAGAGAACCATGATGACTTATCTGCTAAGGATGATCGATAGTGATACTCCTGAACATAAAGGATTGTTGGTTGAGAGTGTAGAACAGCATGCAGAAAAGCAGAAAGAAGAGCCTGTTGCTATATCTGAAACTGACTTTGATTCTGGAAGCAAGGTGCCTCCTGATGAGGGCAAGGATGAATCTGAAAAGACTGAGTCATTGTCCAGGGAAGAGTTAGGCCGCCGTGTTGCTTCTCGTTGGACTGGGGAAGATACCTCAGAGGAAGGAGGGGAAGTTGATGTTGAAAAAGATAATAATCACGAAGAAGTTCCAAAGGACACCCATGATGAGGATGATGGCTATGCTTCAGAAACTGATGATGAGTCCCAAAGATACGATGATGAAGATGTAGAGGAGGAGGCAGATAATGTTTTTGGAGAGGAGGATCACGGGGATTCTAGTTCTTACAAATACGAGTCAGACACTGATTCAGACTTTTCAGATGTAACAACCTCAAGCAAACCATCTTGGTGGGAGAAGATACAAAAAACTGTGCGGGACCTTTTACAGGCTGTTAATTTATTCCAAACTCCAGTGAACCAATCAGAGGCTGCTAGTATACGCAAAGAGTATGATGAATCCAGTGCCAAATATGTTTACAAAGTATGCCCATATAAACAAGCTTCCCAGGTGGAGGGACACTCTACAACCCGTTTAGGGAGCTGGGACAAATTTGAGGACTCGTATAAAATCATGGTCTTTGCAAATGGTGATAAGTGCTGGAATGGGCCTGATAGAAGTTTGAAGGTCAGACTTAAATGTGGTTTGAAAAATGAGGTTGCTGATGTTGATGAACCAAGTCGTTGCGAGTATGTAGCGTTGTTATCTACACCAGCGCTTTGCTCAGAGGAAAAACTTGAGGAACTGCAACACAAATTAGACGTATTGAACAAAGAAGAGCCGCAAGGCCACGATGAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006950 GO:0006952 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0012505 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

PRKCSH-like PRKCSH_1

Protein Analysis

348

Amino Acids

39.72

Weight (kDa)

4.59

Isoelectric Point (pI)

49.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G56360
fragaria_vesca	FvH4_3g45911
malus_domestica	MD03G1001800.v1.1 MD11G1001700.v1.1
prunus_persica	Prupe.6G001700_v2.0.a1 Prupe.6G001700_v2.0.a1
pyrus_communis	pycom03g00180 pycom11g00170
rosa_chinensis	RchiOBHm_Chr5g0084021
rosa_laevigata	RLG00000037073
rosa_multiflora	Rmu_ssc0000372.1_g000082
rosa_roxburghii	Rroxscaffold_1G00000640
rosa_rugosa	Rorug05G0488400
rosa_samantha	Rh5AG541000 Rh5BG566300 Rh5CG588300 Rh5DG574600
rosa_wichuraiana	Rw5G050310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	235
AccI	GTMKAC	1 cut(s)	679
AciI	CCGC	3 cut(s)	301, 616, 1022
AclWI	GGATC	1 cut(s)	513
AcsI	RAATTY	1 cut(s)	791
AcuI	CTGAAG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	18, 27
AfeI	AGCGCT	1 cut(s)	957
AfiI	CCNNNNNNNGG	6 cut(s)	248, 409, 628, 667, 754, 777
AgsI	TTSAA	4 cut(s)	365, 865, 889, 1009
AjnI	CCWGG	2 cut(s)	284, 747
AjuI	GAANNNNNNNTTGG	2 cut(s)	26, 58
AluBI	AGCT	2 cut(s)	743, 783
AluI	AGCT	2 cut(s)	743, 783
AlwI	GGATC	1 cut(s)	513
AlwNI	CAGNNNCTG	3 cut(s)	434, 545, 671
Aor51HI	AGCGCT	1 cut(s)	957
AoxI	GGCC	3 cut(s)	298, 848, 1027
ApeKI	GCWGC	1 cut(s)	671
ApoI	RAATTY	1 cut(s)	791
Asp700I	GAANNNNTTC	1 cut(s)	387
AspLEI	GCGC	1 cut(s)	958
AspS9I	GGNCC	2 cut(s)	619, 848
AsuHPI	GGTGA	2 cut(s)	16, 842
AvaII	GGWCC	1 cut(s)	619
BanI	GGYRCC	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	14
BbvI	GCAGC	1 cut(s)	658
BccI	CCATC	2 cut(s)	410, 592
BceAI	ACGGC	1 cut(s)	288
BciT130I	CCWGG	2 cut(s)	286, 749
BciVI	GTATCC	1 cut(s)	69
BfaI	CTAG	2 cut(s)	519, 675
BfoI	RGCGCY	1 cut(s)	959
BfuI	GTATCC	1 cut(s)	69
BisI	GCNGC	3 cut(s)	301, 672, 1022
BlsI	GCNGC	3 cut(s)	302, 673, 1023
Bme1390I	CCNGG	2 cut(s)	286, 749
Bme18I	GGWCC	1 cut(s)	619
BmgT120I	GGNCC	2 cut(s)	619, 848
BmiI	GGNNCC	2 cut(s)	237, 620
BmrFI	CCNGG	2 cut(s)	286, 749
BmrI	ACTGGG	1 cut(s)	333
BmuI	ACTGGG	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	14
BplI	GAGNNNNNCTC	2 cut(s)	746, 778
BpmI	CTGGAG	1 cut(s)	636
Bpu10I	CCTNAGC	1 cut(s)	107
BpuEI	CTTGAG	2 cut(s)	559, 998
Bsa29I	ATCGAT	1 cut(s)	117
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	2 cut(s)	285, 747
BsaXI	ACNNNNNCTCC	2 cut(s)	339, 369
Bsc4I	CCNNNNNNNGG	6 cut(s)	248, 409, 628, 667, 754, 777
Bse1I	ACTGG	3 cut(s)	328, 653, 702
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	2 cut(s)	286, 749
BseCI	ATCGAT	1 cut(s)	117
BseDI	CCNNGG	2 cut(s)	285, 747
BseGI	GGATG	3 cut(s)	117, 262, 418
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	6 cut(s)	248, 409, 628, 667, 754, 777
BseMII	CTCAG	4 cut(s)	85, 264, 351, 978
BseNI	ACTGG	3 cut(s)	328, 653, 702
BseRI	GAGGAG	3 cut(s)	488, 491, 515
BseXI	GCAGC	1 cut(s)	658
BseYI	CCCAGC	1 cut(s)	783
BshFI	GGCC	3 cut(s)	300, 850, 1029
BshNI	GGYRCC	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	117
BslFI	GGGAC	4 cut(s)	430, 632, 771, 800
BslI	CCNNNNNNNGG	6 cut(s)	248, 409, 628, 667, 754, 777
BsmFI	GGGAC	4 cut(s)	430, 632, 771, 800
BsnI	GGCC	3 cut(s)	300, 850, 1029
Bsp143I	GATC	2 cut(s)	114, 505
BspACI	CCGC	3 cut(s)	301, 616, 1022
BspANI	GGCC	3 cut(s)	300, 850, 1029
BspCNI	CTCAG	4 cut(s)	84, 265, 350, 977
BspDI	ATCGAT	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	237, 620
BspPI	GGATC	1 cut(s)	513
BspQI	GCTCTTC	2 cut(s)	183, 1011
BspT107I	GGYRCC	1 cut(s)	235
BsrI	ACTGG	3 cut(s)	328, 653, 702
BssECI	CCNNGG	2 cut(s)	285, 747
BssMI	GATC	2 cut(s)	114, 505
BssNAI	GTATAC	1 cut(s)	680
Bst1107I	GTATAC	1 cut(s)	680
Bst2UI	CCWGG	2 cut(s)	286, 749
Bst4CI	ACNGT	1 cut(s)	613
Bst6I	CTCTTC	3 cut(s)	183, 285, 1011
BstC8I	GCNNGC	1 cut(s)	171
BstDEI	CTNAG	5 cut(s)	71, 107, 273, 337, 964
BstENI	CCTNNNNNAGG	1 cut(s)	626
BstF5I	GGATG	3 cut(s)	117, 262, 418
BstH2I	RGCGCY	1 cut(s)	959
BstHHI	GCGC	1 cut(s)	958
BstKTI	GATC	2 cut(s)	117, 508
BstMBI	GATC	2 cut(s)	114, 505
BstNI	CCWGG	2 cut(s)	286, 749
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	2 cut(s)	284, 747
BstV1I	GCAGC	1 cut(s)	658
BstV2I	GAAGAC	1 cut(s)	14
BstXI	CCANNNNNNTGG	1 cut(s)	591
BstZ17I	GTATAC	1 cut(s)	680
Bsu15I	ATCGAT	1 cut(s)	117
BsuI	GTATCC	1 cut(s)	69
BsuRI	GGCC	3 cut(s)	300, 850, 1029
BsuTUI	ATCGAT	1 cut(s)	117
BtsCI	GGATG	3 cut(s)	117, 262, 418
BtsIMutI	CAGTG	3 cut(s)	543, 660, 709
Cac8I	GCNNGC	1 cut(s)	171
CaiI	CAGNNNCTG	3 cut(s)	434, 545, 671
CfoI	GCGC	1 cut(s)	958
Cfr13I	GGNCC	2 cut(s)	619, 848
ClaI	ATCGAT	1 cut(s)	117
Csp6I	GTAC	2 cut(s)	17, 26
CviAII	CATG	4 cut(s)	91, 170, 404, 814
CviQI	GTAC	2 cut(s)	17, 26
DdeI	CTNAG	5 cut(s)	71, 107, 273, 337, 964
DpnI	GATC	2 cut(s)	116, 507
DpnII	GATC	2 cut(s)	114, 505
Eam1104I	CTCTTC	3 cut(s)	183, 285, 1011
EarI	CTCTTC	3 cut(s)	183, 285, 1011
Eco47I	GGWCC	1 cut(s)	619
Eco47III	AGCGCT	1 cut(s)	957
Eco57I	CTGAAG	1 cut(s)	411
EcoNI	CCTNNNNNAGG	1 cut(s)	626
EcoO109I	RGGNCCY	1 cut(s)	619
EcoRII	CCWGG	2 cut(s)	284, 747
FaeI	CATG	4 cut(s)	94, 173, 407, 817
FaqI	GGGAC	4 cut(s)	430, 632, 771, 800
FatI	CATG	4 cut(s)	90, 169, 403, 813
FauI	CCCGC	1 cut(s)	609
FauNDI	CATATG	1 cut(s)	30
FblI	GTMKAC	1 cut(s)	679
Fnu4HI	GCNGC	3 cut(s)	301, 672, 1022
FokI	GGATG	3 cut(s)	124, 269, 425
Fsp4HI	GCNGC	3 cut(s)	301, 672, 1022
FspBI	CTAG	2 cut(s)	519, 675
GlaI	GCGC	1 cut(s)	957
GluI	GCNGC	3 cut(s)	301, 672, 1022
GsaI	CCCAGC	1 cut(s)	787
GsuI	CTGGAG	1 cut(s)	636
HaeII	RGCGCY	1 cut(s)	959
HaeIII	GGCC	3 cut(s)	300, 850, 1029
HhaI	GCGC	1 cut(s)	958
Hin1II	CATG	4 cut(s)	94, 173, 407, 817
Hin6I	GCGC	1 cut(s)	956
HinP1I	GCGC	1 cut(s)	956
HindIII	AAGCTT	1 cut(s)	741
HinfI	GANTC	9 cut(s)	221, 260, 275, 443, 515, 536, 548, 698, 800
HphI	GGTGA	2 cut(s)	16, 842
Hpy166II	GTNNAC	3 cut(s)	658, 680, 718
Hpy188III	TCNNGA	5 cut(s)	73, 131, 225, 242, 380
Hpy8I	GTNNAC	3 cut(s)	658, 680, 718
HpyAV	CCTTC	2 cut(s)	338, 859
HpyCH4III	ACNGT	1 cut(s)	613
HpyCH4IV	ACGT	2 cut(s)	15, 1002
HpyCH4V	TGCA	3 cut(s)	173, 824, 988
HpyF3I	CTNAG	5 cut(s)	71, 107, 273, 337, 964
HpySE526I	ACGT	2 cut(s)	15, 1002
Hsp92II	CATG	4 cut(s)	94, 173, 407, 817
HspAI	GCGC	1 cut(s)	956
Kzo9I	GATC	2 cut(s)	114, 505
LguI	GCTCTTC	2 cut(s)	183, 1011
LmnI	GCTCC	1 cut(s)	780
Lsp1109I	GCAGC	1 cut(s)	658
MaeI	CTAG	2 cut(s)	519, 675
MaeII	ACGT	2 cut(s)	15, 1002
MaeIII	GTNAC	1 cut(s)	565
MalI	GATC	2 cut(s)	116, 507
MboI	GATC	2 cut(s)	114, 505
MboII	GAAGA	9 cut(s)	19, 46, 200, 302, 341, 395, 476, 610, 1028
MluCI	AATT	4 cut(s)	41, 637, 791, 995
MlyI	GAGTC	4 cut(s)	284, 452, 545, 794
MmeI	TCCRAC	1 cut(s)	299
MroXI	GAANNNNTTC	1 cut(s)	387
MseI	TTAA	3 cut(s)	636, 876, 1042
MslI	CAYNNNNRTG	1 cut(s)	589
MspR9I	CCNGG	2 cut(s)	286, 749
MvaI	CCWGG	2 cut(s)	286, 749
NdeI	CATATG	1 cut(s)	30
NdeII	GATC	2 cut(s)	114, 505
NlaIII	CATG	4 cut(s)	94, 173, 407, 817
NlaIV	GGNNCC	2 cut(s)	237, 620
NspI	RCATGY	1 cut(s)	173
PaeI	GCATGC	1 cut(s)	173
PciSI	GCTCTTC	2 cut(s)	183, 1011
PdmI	GAANNNNTTC	1 cut(s)	387
PfeI	GAWTC	5 cut(s)	221, 260, 515, 548, 698
PflFI	GACNNNGTC	1 cut(s)	274
PkrI	GCNGC	3 cut(s)	302, 673, 1023
PleI	GAGTC	4 cut(s)	283, 451, 544, 794
PpsI	GAGTC	4 cut(s)	283, 451, 544, 794
PpuMI	RGGWCCY	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	619
Psp6I	CCWGG	2 cut(s)	284, 747
PspFI	CCCAGC	1 cut(s)	783
PspGI	CCWGG	2 cut(s)	284, 747
PspN4I	GGNNCC	2 cut(s)	237, 620
PspPI	GGNCC	2 cut(s)	619, 848
PspPPI	RGGWCCY	1 cut(s)	619
PstNI	CAGNNNCTG	3 cut(s)	434, 545, 671
PsyI	GACNNNGTC	1 cut(s)	274
RsaI	GTAC	2 cut(s)	18, 27
RsaNI	GTAC	2 cut(s)	17, 26
RseI	CAYNNNNRTG	1 cut(s)	589
SapI	GCTCTTC	2 cut(s)	183, 1011
SaqAI	TTAA	3 cut(s)	636, 876, 1042
SatI	GCNGC	3 cut(s)	301, 672, 1022
Sau3AI	GATC	2 cut(s)	114, 505
Sau96I	GGNCC	2 cut(s)	619, 848
SchI	GAGTC	4 cut(s)	284, 452, 545, 794
ScrFI	CCNGG	2 cut(s)	286, 749
SinI	GGWCC	1 cut(s)	619
SmiMI	CAYNNNNRTG	1 cut(s)	589
SmlI	CTYRAG	2 cut(s)	574, 977
SmoI	CTYRAG	2 cut(s)	574, 977
SphI	GCATGC	1 cut(s)	173
Sse9I	AATT	4 cut(s)	41, 637, 791, 995
SsiI	CCGC	3 cut(s)	301, 616, 1022
SspMI	CTAG	2 cut(s)	519, 675
StyD4I	CCNGG	2 cut(s)	284, 747
TaaI	ACNGT	1 cut(s)	613
TaiI	ACGT	2 cut(s)	18, 1005
TaqI	TCGA	1 cut(s)	117
TasI	AATT	4 cut(s)	41, 637, 791, 995
TatI	WGTACW	1 cut(s)	25
TauI	GCSGC	2 cut(s)	303, 1024
TfiI	GAWTC	5 cut(s)	221, 260, 515, 548, 698
Tru1I	TTAA	3 cut(s)	636, 876, 1042
Tru9I	TTAA	3 cut(s)	636, 876, 1042
TscAI	CASTG	3 cut(s)	550, 660, 709
TseI	GCWGC	1 cut(s)	671
TspDTI	ATGAA	5 cut(s)	47, 273, 477, 711, 927
TspRI	CASTG	3 cut(s)	550, 660, 709
Tth111I	GACNNNGTC	1 cut(s)	274
VpaK11BI	GGWCC	1 cut(s)	619
XagI	CCTNNNNNAGG	1 cut(s)	626
XapI	RAATTY	1 cut(s)	791
XceI	RCATGY	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	679
XmnI	GAANNNNTTC	1 cut(s)	387
XspI	CTAG	2 cut(s)	519, 675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.