Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013741

Physical Location & Seq

Genomic Coordinates Forward (+)

381009 .. 381697

Gene Structure 689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00460.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGTACAGGGGTGATGTAGTTCCCAAGGATGTCAATGCTGCCGTTGCAACTATCAAAACAAAAAGGACTGTGCAGTTTGTTGACTGGTGCCCAACAGGTTTCAAATGTGGTATTAACTATCAGCCTCCAACAGTTGTACCAGGGGGTGATCTTGCCAAGGTTCAGCGAGCAGTGTGCATGATCAGTAACAACACGGCAGTGGCTGAGGTGTTCTCACGCATTGACCACAAATTTGACCTCATGTATTCCAAGAGGGCATTCGTTCACTGGTATGTTGGTGAGGGAATGGAAGAAGGAGAGTTTTCAGAAGCTCGTGAAGATCTGGCTGCTCTAGAGAAAGATTACGAGGAAGTTGGCGCCGAAGGTGTTGATGATGAAGAGGGAAGTGAAGGTTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

133

Amino Acids

14.68

Weight (kDa)

4.6

Isoelectric Point (pI)

31.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013741)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00460 pycom11g00420
rosa_chinensis	RchiOBHm_Chr2g0171661
rosa_multiflora	Rmu_sc0012935.1_g000007 Rmu_ssc0000252.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082710 Rroxscaffold_3G00228380
rosa_rugosa	Rorug02G0555100
rosa_samantha	Rh2AG605800 Rh2AG630100 Rh2BG640600 Rh2BG643100 Rh2CG587100 Rh2DG629400 Rh2DG651700 Rh5AG533300 Rh5CG583400 Rh5DG570000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	87, 356
AcsI	RAATTY	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	357
AfaI	GTAC	2 cut(s)	5, 138
AgsI	TTSAA	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	139
AjuI	GAANNNNNNNTTGG	2 cut(s)	242, 274
AleI	CACNNNNGTG	1 cut(s)	197
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
AlwNI	CAGNNNCTG	1 cut(s)	203
ApeKI	GCWGC	2 cut(s)	38, 326
ApoI	RAATTY	1 cut(s)	230
ArsI	GACNNNNNNTTYG	2 cut(s)	215, 247
AspLEI	GCGC	1 cut(s)	359
AsuHPI	GGTGA	3 cut(s)	23, 158, 290
BaeGI	GKGCMC	1 cut(s)	92
BaeI	ACNNNNGTAYC	2 cut(s)	120, 153
BanI	GGYRCC	2 cut(s)	87, 356
BauI	CACGAG	1 cut(s)	312
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	2 cut(s)	25, 313
BceAI	ACGGC	2 cut(s)	26, 210
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BciT130I	CCWGG	1 cut(s)	141
BclI	TGATCA	1 cut(s)	180
BfaI	CTAG	2 cut(s)	332, 397
BfoI	RGCGCY	1 cut(s)	360
BglII	AGATCT	1 cut(s)	319
BisI	GCNGC	2 cut(s)	39, 327
BlsI	GCNGC	2 cut(s)	40, 328
Bme1390I	CCNGG	1 cut(s)	141
BmiI	GGNNCC	2 cut(s)	89, 358
BmrFI	CCNGG	1 cut(s)	141
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu10I	CCTNAGC	1 cut(s)	204
BsaHI	GRCGYC	1 cut(s)	357
BsaJI	CCNNGG	3 cut(s)	24, 140, 156
Bse1I	ACTGG	2 cut(s)	89, 272
BseBI	CCWGG	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	24, 140, 156
BseGI	GGATG	1 cut(s)	34
BseMII	CTCAG	1 cut(s)	195
BseNI	ACTGG	2 cut(s)	89, 272
BseSI	GKGCMC	1 cut(s)	92
BseXI	GCAGC	2 cut(s)	25, 313
BsgI	GTGCAG	1 cut(s)	92
BshNI	GGYRCC	2 cut(s)	87, 356
BsmI	GAATGC	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	3 cut(s)	148, 180, 319
BspCNI	CTCAG	1 cut(s)	196
BspLI	GGNNCC	2 cut(s)	89, 358
BspT107I	GGYRCC	2 cut(s)	87, 356
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	2 cut(s)	89, 272
BssECI	CCNNGG	3 cut(s)	24, 140, 156
BssMI	GATC	3 cut(s)	148, 180, 319
BssNI	GRCGYC	1 cut(s)	357
BssSI	CACGAG	1 cut(s)	312
BssT1I	CCWWGG	2 cut(s)	24, 156
Bst2BI	CACGAG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	2 cut(s)	70, 133
Bst6I	CTCTTC	1 cut(s)	372
BstACI	GRCGYC	1 cut(s)	357
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	168
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	34
BstH2I	RGCGCY	1 cut(s)	360
BstHHI	GCGC	1 cut(s)	359
BstKTI	GATC	3 cut(s)	151, 183, 322
BstMBI	GATC	3 cut(s)	148, 180, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	44
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstSLI	GKGCMC	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	25, 313
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	34
BtsI	GCAGTG	2 cut(s)	177, 204
BtsIMutI	CAGTG	3 cut(s)	177, 204, 265
Cac8I	GCNNGC	1 cut(s)	168
CaiI	CAGNNNCTG	1 cut(s)	203
CfoI	GCGC	1 cut(s)	359
Csp6I	GTAC	2 cut(s)	4, 137
CviAII	CATG	2 cut(s)	178, 241
CviJI	RGCY	4 cut(s)	124, 203, 311, 326
CviKI_1	RGCY	4 cut(s)	124, 203, 311, 326
CviQI	GTAC	2 cut(s)	4, 137
DdeI	CTNAG	1 cut(s)	204
DinI	GGCGCC	1 cut(s)	358
DpnI	GATC	3 cut(s)	150, 182, 321
DpnII	GATC	3 cut(s)	148, 180, 319
Eam1104I	CTCTTC	1 cut(s)	372
EarI	CTCTTC	1 cut(s)	372
Eco130I	CCWWGG	2 cut(s)	24, 156
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	2 cut(s)	24, 156
EgeI	GGCGCC	1 cut(s)	358
EheI	GGCGCC	1 cut(s)	358
ErhI	CCWWGG	2 cut(s)	24, 156
FaeI	CATG	2 cut(s)	181, 244
FaiI	YATR	3 cut(s)	179, 242, 273
FatI	CATG	2 cut(s)	177, 240
FbaI	TGATCA	1 cut(s)	180
Fnu4HI	GCNGC	2 cut(s)	39, 327
FokI	GGATG	1 cut(s)	41
Fsp4HI	GCNGC	2 cut(s)	39, 327
FspBI	CTAG	2 cut(s)	332, 397
GlaI	GCGC	1 cut(s)	358
GluI	GCNGC	2 cut(s)	39, 327
HaeII	RGCGCY	1 cut(s)	360
HhaI	GCGC	1 cut(s)	359
Hin1I	GRCGYC	1 cut(s)	357
Hin1II	CATG	2 cut(s)	181, 244
Hin6I	GCGC	1 cut(s)	357
HinP1I	GCGC	1 cut(s)	357
HincII	GTYRAC	1 cut(s)	82
HindII	GTYRAC	1 cut(s)	82
HphI	GGTGA	3 cut(s)	23, 158, 290
Hpy166II	GTNNAC	2 cut(s)	82, 265
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	2 cut(s)	314, 332
Hpy8I	GTNNAC	2 cut(s)	82, 265
HpyAV	CCTTC	3 cut(s)	287, 356, 383
HpyCH4III	ACNGT	2 cut(s)	70, 133
HpyCH4V	TGCA	3 cut(s)	47, 73, 177
HpyF10VI	GCNNNNNNNGC	1 cut(s)	44
HpyF3I	CTNAG	1 cut(s)	204
Hsp92I	GRCGYC	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	181, 244
HspAI	GCGC	1 cut(s)	357
KasI	GGCGCC	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	180
Kzo9I	GATC	3 cut(s)	148, 180, 319
LpnPI	CCDG	6 cut(s)	70, 81, 126, 153, 253, 308
Lsp1109I	GCAGC	2 cut(s)	25, 313
MaeI	CTAG	2 cut(s)	332, 397
MaeIII	GTNAC	2 cut(s)	185, 392
MalI	GATC	3 cut(s)	150, 182, 321
MboI	GATC	3 cut(s)	148, 180, 319
MboII	GAAGA	3 cut(s)	302, 329, 389
MflI	RGATCY	1 cut(s)	319
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	1 cut(s)	230
Mly113I	GGCGCC	1 cut(s)	357
MmeI	TCCRAC	1 cut(s)	152
MnlI	CCTC	7 cut(s)	135, 199, 246, 248, 274, 340, 373
MseI	TTAA	1 cut(s)	114
MslI	CAYNNNNRTG	2 cut(s)	197, 270
MspR9I	CCNGG	1 cut(s)	141
Mva1269I	GAATGC	1 cut(s)	257
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	44
NarI	GGCGCC	1 cut(s)	357
NdeII	GATC	3 cut(s)	148, 180, 319
NlaIII	CATG	2 cut(s)	181, 244
NlaIV	GGNNCC	2 cut(s)	89, 358
OliI	CACNNNNGTG	1 cut(s)	197
PctI	GAATGC	1 cut(s)	257
PkrI	GCNGC	2 cut(s)	40, 328
PluTI	GGCGCC	1 cut(s)	360
Psp6I	CCWGG	1 cut(s)	139
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	89, 358
PstNI	CAGNNNCTG	1 cut(s)	203
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	5, 138
RsaNI	GTAC	2 cut(s)	4, 137
RseI	CAYNNNNRTG	2 cut(s)	197, 270
SaqAI	TTAA	1 cut(s)	114
SatI	GCNGC	2 cut(s)	39, 327
Sau3AI	GATC	3 cut(s)	148, 180, 319
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	100, 162, 210, 240, 313, 367, 394
SfoI	GGCGCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	197, 270
Sse9I	AATT	1 cut(s)	230
SspDI	GGCGCC	1 cut(s)	356
SspMI	CTAG	2 cut(s)	332, 397
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	2 cut(s)	24, 156
TaaI	ACNGT	2 cut(s)	70, 133
TasI	AATT	1 cut(s)	230
TatI	WGTACW	1 cut(s)	3
Tru1I	TTAA	1 cut(s)	114
Tru9I	TTAA	1 cut(s)	114
TscAI	CASTG	3 cut(s)	177, 204, 272
TseI	GCWGC	2 cut(s)	38, 326
TspDTI	ATGAA	1 cut(s)	390
TspRI	CASTG	3 cut(s)	177, 204, 272
XapI	RAATTY	1 cut(s)	230
XbaI	TCTAGA	1 cut(s)	331
XspI	CTAG	2 cut(s)	332, 397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.