Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013741

Physical Location & Seq

Genomic Coordinates Reverse (-)

82680239 .. 82683139

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG583400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCTCTCCTCATATGCTCCTGTCATCTCAGCTGCAAAGGCATACCATGAGCAGATCTCTGTTCCTGAGATCACCAATGCAGTTTTTGAGCCCTCAAGCATGATGGCGAAGTGTGATCCCAGGCATGGCAAGTACATGGCGTGCTGCTTAATGTACAGGGGAGATGTTGTTCCCAAGGACGTTAACGCTGCTGTTGCAACTATCAAAACAAAAAGGACTGTACAGTTTGTTGACTGGTGCCCAACTGGCTTCAAGTGCGGTATTAACTATGAACCTCCAACAGTTGTACCTGGGGGTGATCTGGCCAAGGTGCAGCGAGCAGTTTGCATGATCAGCAACAACACAGCAGTGGCTGAGGTGTTCTCACGCATTGACCACAAGTTTGATCTCATGTACTCAAAGAGGGCTTTCGTCCACTGGTATGTTGGTGAAGGCATGGAAGAAGGAGAGTTCTCAGAAGCCCGTGAAGATCTGGCTGCACTTGAGAAAGATTACGAGGAAGTTGGTGCTGAAGGTGTGGATGATGAAGAGGGGGGAAGTGAGGATTACGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

185

Amino Acids

20.5

Weight (kDa)

4.69

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin_C	PF03953	2 - 125	7.6e-48	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013741)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00460 pycom11g00420
rosa_chinensis	RchiOBHm_Chr2g0171661
rosa_multiflora	Rmu_sc0012935.1_g000007 Rmu_ssc0000252.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082710 Rroxscaffold_3G00228380
rosa_rugosa	Rorug02G0555100
rosa_samantha	Rh2AG605800 Rh2AG630100 Rh2BG640600 Rh2BG643100 Rh2CG587100 Rh2DG629400 Rh2DG651700 Rh5AG533300 Rh5CG583400 Rh5DG570000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	237
AciI	CCGC	1 cut(s)	258
AclWI	GGATC	1 cut(s)	110
AcoI	YGGCCR	1 cut(s)	303
AcuI	CTGAAG	1 cut(s)	531
AfaI	GTAC	5 cut(s)	134, 155, 222, 288, 395
AfiI	CCNNNNNNNGG	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	253
AjnI	CCWGG	2 cut(s)	119, 289
AleI	CACNNNNGTG	1 cut(s)	347
AloI	GAACNNNNNNTCC	2 cut(s)	153, 185
AluBI	AGCT	1 cut(s)	32
AluI	AGCT	1 cut(s)	32
AlwI	GGATC	1 cut(s)	110
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	5 cut(s)	32, 144, 188, 313, 476
ArsI	GACNNNNNNTTYG	2 cut(s)	365, 397
AsuHPI	GGTGA	3 cut(s)	64, 308, 440
BaeGI	GKGCMC	1 cut(s)	242
BaeI	ACNNNNGTAYC	2 cut(s)	270, 303
BalI	TGGCCA	1 cut(s)	305
BanI	GGYRCC	1 cut(s)	237
BanII	GRGCYC	1 cut(s)	93
BbvCI	CCTCAGC	1 cut(s)	354
BbvI	GCAGC	5 cut(s)	19, 131, 175, 325, 463
BccI	CCATC	1 cut(s)	97
BcgI	CGANNNNNNTGC	2 cut(s)	306, 340
BciT130I	CCWGG	2 cut(s)	121, 291
BclI	TGATCA	1 cut(s)	330
BglI	GCCNNNNNGGC	1 cut(s)	246
BglII	AGATCT	2 cut(s)	54, 469
BisI	GCNGC	5 cut(s)	33, 145, 189, 314, 477
BlsI	GCNGC	5 cut(s)	34, 146, 190, 315, 478
Bme1390I	CCNGG	2 cut(s)	121, 291
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	2 cut(s)	121, 291
BplI	GAGNNNNNCTC	4 cut(s)	41, 73, 347, 379
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	2 cut(s)	79, 503
BsaJI	CCNNGG	4 cut(s)	119, 174, 290, 306
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
Bse1I	ACTGG	3 cut(s)	239, 250, 422
BseBI	CCWGG	2 cut(s)	121, 291
BseDI	CCNNGG	4 cut(s)	119, 174, 290, 306
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	4 cut(s)	42, 57, 345, 468
BseNI	ACTGG	3 cut(s)	239, 250, 422
BseSI	GKGCMC	1 cut(s)	242
BseXI	GCAGC	5 cut(s)	19, 131, 175, 325, 463
BsgI	GTGCAG	2 cut(s)	332, 462
BshFI	GGCC	1 cut(s)	305
BshNI	GGYRCC	1 cut(s)	237
BslI	CCNNNNNNNGG	1 cut(s)	125
BsnI	GGCC	1 cut(s)	305
Bsp1286I	GDGCHC	2 cut(s)	93, 242
Bsp1407I	TGTACA	2 cut(s)	153, 220
Bsp143I	GATC	7 cut(s)	54, 69, 115, 298, 330, 385, 469
BspACI	CCGC	1 cut(s)	258
BspANI	GGCC	1 cut(s)	305
BspCNI	CTCAG	4 cut(s)	41, 58, 346, 467
BspLI	GGNNCC	1 cut(s)	239
BspPI	GGATC	1 cut(s)	110
BspT107I	GGYRCC	1 cut(s)	237
BsrGI	TGTACA	2 cut(s)	153, 220
BsrI	ACTGG	3 cut(s)	239, 250, 422
BssECI	CCNNGG	4 cut(s)	119, 174, 290, 306
BssMI	GATC	7 cut(s)	54, 69, 115, 298, 330, 385, 469
BssT1I	CCWWGG	2 cut(s)	174, 306
Bst2UI	CCWGG	2 cut(s)	121, 291
Bst4CI	ACNGT	3 cut(s)	220, 225, 283
Bst6I	CTCTTC	1 cut(s)	522
BstAUI	TGTACA	2 cut(s)	153, 220
BstC8I	GCNNGC	2 cut(s)	142, 318
BstDEI	CTNAG	4 cut(s)	28, 66, 354, 454
BstF5I	GGATG	1 cut(s)	526
BstKTI	GATC	7 cut(s)	57, 72, 118, 301, 333, 388, 472
BstMBI	GATC	7 cut(s)	54, 69, 115, 298, 330, 385, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	38, 194, 246, 255, 333
BstNI	CCWGG	2 cut(s)	121, 291
BstSCI	CCNGG	2 cut(s)	119, 289
BstSLI	GKGCMC	1 cut(s)	242
BstV1I	GCAGC	5 cut(s)	19, 131, 175, 325, 463
BstX2I	RGATCY	2 cut(s)	54, 469
BstYI	RGATCY	2 cut(s)	54, 469
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	1 cut(s)	526
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	354, 415
Cac8I	GCNNGC	2 cut(s)	142, 318
CaiI	CAGNNNCTG	1 cut(s)	353
Csp6I	GTAC	5 cut(s)	133, 154, 221, 287, 394
CviAII	CATG	7 cut(s)	47, 100, 125, 136, 328, 391, 436
CviJI	RGCY	8 cut(s)	32, 91, 249, 305, 353, 407, 461, 476
CviKI_1	RGCY	8 cut(s)	32, 91, 249, 305, 353, 407, 461, 476
CviQI	GTAC	5 cut(s)	133, 154, 221, 287, 394
DdeI	CTNAG	4 cut(s)	28, 66, 354, 454
DpnI	GATC	7 cut(s)	56, 71, 117, 300, 332, 387, 471
DpnII	GATC	7 cut(s)	54, 69, 115, 298, 330, 385, 469
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	1 cut(s)	522
EarI	CTCTTC	1 cut(s)	522
Eco130I	CCWWGG	2 cut(s)	174, 306
Eco24I	GRGCYC	1 cut(s)	93
Eco57I	CTGAAG	1 cut(s)	531
EcoRII	CCWGG	2 cut(s)	119, 289
EcoT14I	CCWWGG	2 cut(s)	174, 306
EcoT38I	GRGCYC	1 cut(s)	93
ErhI	CCWWGG	2 cut(s)	174, 306
FaeI	CATG	7 cut(s)	50, 103, 128, 139, 331, 394, 439
FatI	CATG	7 cut(s)	46, 99, 124, 135, 327, 390, 435
FauNDI	CATATG	1 cut(s)	13
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	5 cut(s)	33, 145, 189, 314, 477
FokI	GGATG	1 cut(s)	533
FriOI	GRGCYC	1 cut(s)	93
Fsp4HI	GCNGC	5 cut(s)	33, 145, 189, 314, 477
GluI	GCNGC	5 cut(s)	33, 145, 189, 314, 477
HaeIII	GGCC	1 cut(s)	305
Hin1II	CATG	7 cut(s)	50, 103, 128, 139, 331, 394, 439
HincII	GTYRAC	2 cut(s)	184, 232
HindII	GTYRAC	2 cut(s)	184, 232
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	3 cut(s)	64, 308, 440
Hpy166II	GTNNAC	3 cut(s)	184, 232, 415
Hpy188I	TCNGA	1 cut(s)	457
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	3 cut(s)	184, 232, 415
HpyAV	CCTTC	3 cut(s)	425, 437, 506
HpyCH4III	ACNGT	3 cut(s)	220, 225, 283
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	6 cut(s)	35, 80, 197, 313, 327, 479
HpyF10VI	GCNNNNNNNGC	5 cut(s)	38, 194, 246, 255, 333
HpyF3I	CTNAG	4 cut(s)	28, 66, 354, 454
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	7 cut(s)	50, 103, 128, 139, 331, 394, 439
Ksp22I	TGATCA	1 cut(s)	330
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	54, 69, 115, 298, 330, 385, 469
LmnI	GCTCC	1 cut(s)	22
Lsp1109I	GCAGC	5 cut(s)	19, 131, 175, 325, 463
MaeII	ACGT	1 cut(s)	180
MalI	GATC	7 cut(s)	56, 71, 117, 300, 332, 387, 471
MboI	GATC	7 cut(s)	54, 69, 115, 298, 330, 385, 469
MboII	GAAGA	3 cut(s)	452, 479, 539
MflI	RGATCY	2 cut(s)	54, 469
MhlI	GDGCHC	2 cut(s)	93, 242
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	1 cut(s)	553
MluNI	TGGCCA	1 cut(s)	305
MmeI	TCCRAC	1 cut(s)	302
MnlI	CCTC	8 cut(s)	19, 103, 285, 349, 396, 490, 523, 535
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	3 cut(s)	149, 183, 264
MslI	CAYNNNNRTG	2 cut(s)	347, 420
Msp20I	TGGCCA	1 cut(s)	305
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	2 cut(s)	121, 291
MvaI	CCWGG	2 cut(s)	121, 291
MwoI	GCNNNNNNNGC	5 cut(s)	38, 194, 246, 255, 333
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	7 cut(s)	54, 69, 115, 298, 330, 385, 469
NlaIII	CATG	7 cut(s)	50, 103, 128, 139, 331, 394, 439
NlaIV	GGNNCC	1 cut(s)	239
OliI	CACNNNNGTG	1 cut(s)	347
PkrI	GCNGC	5 cut(s)	34, 146, 190, 315, 478
Psp6I	CCWGG	2 cut(s)	119, 289
PspGI	CCWGG	2 cut(s)	119, 289
PspN4I	GGNNCC	1 cut(s)	239
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	54, 469
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	5 cut(s)	134, 155, 222, 288, 395
RsaNI	GTAC	5 cut(s)	133, 154, 221, 287, 394
RseI	CAYNNNNRTG	2 cut(s)	347, 420
SaqAI	TTAA	3 cut(s)	149, 183, 264
SatI	GCNGC	5 cut(s)	33, 145, 189, 314, 477
Sau3AI	GATC	7 cut(s)	54, 69, 115, 298, 330, 385, 469
ScrFI	CCNGG	2 cut(s)	121, 291
SduI	GDGCHC	2 cut(s)	93, 242
SetI	ASST	7 cut(s)	34, 183, 277, 292, 312, 360, 517
SmiMI	CAYNNNNRTG	2 cut(s)	347, 420
SmlI	CTYRAG	2 cut(s)	94, 482
SmoI	CTYRAG	2 cut(s)	94, 482
Sse9I	AATT	1 cut(s)	553
SsiI	CCGC	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	119, 289
StyI	CCWWGG	2 cut(s)	174, 306
TaaI	ACNGT	3 cut(s)	220, 225, 283
TaiI	ACGT	1 cut(s)	183
TasI	AATT	1 cut(s)	553
TatI	WGTACW	4 cut(s)	132, 153, 220, 393
Tru1I	TTAA	3 cut(s)	149, 183, 264
Tru9I	TTAA	3 cut(s)	149, 183, 264
TscAI	CASTG	2 cut(s)	354, 422
TseI	GCWGC	5 cut(s)	32, 144, 188, 313, 476
TspDTI	ATGAA	2 cut(s)	285, 540
TspRI	CASTG	2 cut(s)	354, 422
XcmI	CCANNNNNNNNNTGG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.