Rh2DG629400

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0013741
Physical Location & Seq
Reverse (-)
85892104 .. 85898037
5934 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG629400.1

Sequence Viewer

Length: 552 bp
ATGCTTTCATCCTATGCACCAGTGATCTCTGCCGAGAAGGCCTACCATGAGCAACTCTCTGTGGCTGAAATCACCAACAGCGCCTTTGAGCCGGCCTCTATGATGGCCAAATGTGATCCTAGGCATGGGAAGTATATGGCTTGCTGCCTGATGTACAGAGGAGATGTGGTACCAAAGGATGTGAATGCTGCTGTGGCCACAATCAAGACCAAGAGGACCATTCAGTTTGTGGATTGGTGCCCAACTGGGTTCAAGTGTGGTATCAACTACCAGCCCCCTACTGTTGTACCTGGTGGTGACTTGGCTAAGGTTCAGAGGGCTGTGTGCATGATTTCCAACTCCACAAGTGTTGCTGAAGTGTTTTCAAGGATTGATCACAAGTTTGATCTGATGTATGCTAAGCGTGCTTTTGTGCACTGGTATGTTGGTGAGGGTATGGAGGAGGGTGAGTTTTCGGAAGCTAGGGAGGACTTGGCTGCTCTTGAGAAGGATTATGAAGAAGTTGGGTTGGAGTCAGCTGAGGGTGAAGATGGTGAGGATGAGGAGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

183

Amino Acids

20.35

Weight (kDa)

4.7

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin_C PF03953 2 - 125 4.4e-48 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 169
AccB1I GGYRCC 2 cut(s) 169, 237
AclWI GGATC 1 cut(s) 110
AcoI YGGCCR 2 cut(s) 105, 195
AcuI CTGAAG 1 cut(s) 375
AfaI GTAC 4 cut(s) 155, 171, 288, 548
AfiI CCNNNNNNNGG 1 cut(s) 125
AgsI TTSAA 2 cut(s) 253, 366
AjnI CCWGG 1 cut(s) 289
AluBI AGCT 2 cut(s) 461, 518
AluI AGCT 2 cut(s) 461, 518
Alw21I GWGCWC 1 cut(s) 417
Alw44I GTGCAC 1 cut(s) 413
AlwI GGATC 1 cut(s) 110
AoxI GGCC 4 cut(s) 39, 93, 105, 195
ApaLI GTGCAC 1 cut(s) 413
ApeKI GCWGC 3 cut(s) 144, 188, 476
Asp718I GGTACC 1 cut(s) 169
AspA2I CCTAGG 1 cut(s) 119
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 216
AsuHPI GGTGA 6 cut(s) 64, 308, 440, 458, 536, 545
AvaII GGWCC 1 cut(s) 216
AvrII CCTAGG 1 cut(s) 119
BaeGI GKGCMC 2 cut(s) 242, 417
BaeI ACNNNNGTAYC 2 cut(s) 270, 303
BalI TGGCCA 2 cut(s) 107, 197
BanI GGYRCC 2 cut(s) 169, 237
Bbv12I GWGCWC 1 cut(s) 417
BbvCI CCTCAGC 1 cut(s) 519
BbvI GCAGC 3 cut(s) 131, 175, 463
BccI CCATC 2 cut(s) 97, 524
BciT130I CCWGG 1 cut(s) 291
BclI TGATCA 1 cut(s) 373
BfaI CTAG 3 cut(s) 120, 462, 550
BfoI RGCGCY 1 cut(s) 84
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 3 cut(s) 145, 189, 477
BlnI CCTAGG 1 cut(s) 119
BlpI GCTNAGC 1 cut(s) 399
BlsI GCNGC 3 cut(s) 146, 190, 478
BmcAI AGTACT 1 cut(s) 548
Bme1390I CCNGG 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmiI GGNNCC 2 cut(s) 171, 239
BmrFI CCNGG 1 cut(s) 291
BmrI ACTGGG 1 cut(s) 255
BmuI ACTGGG 1 cut(s) 255
BplI GAGNNNNNCTC 4 cut(s) 41, 73, 80, 112
Bpu10I CCTNAGC 2 cut(s) 306, 519
Bpu1102I GCTNAGC 1 cut(s) 399
BpuEI CTTGAG 1 cut(s) 503
BsaJI CCNNGG 1 cut(s) 119
BsaXI ACNNNNNCTCC 4 cut(s) 153, 183, 434, 464
Bsc4I CCNNNNNNNGG 1 cut(s) 125
Bse118I RCCGGY 1 cut(s) 91
Bse1I ACTGG 3 cut(s) 20, 250, 422
BseBI CCWGG 1 cut(s) 291
BseDI CCNNGG 1 cut(s) 119
BseGI GGATG 3 cut(s) 8, 184, 544
BseLI CCNNNNNNNGG 1 cut(s) 125
BseMII CTCAG 1 cut(s) 510
BseNI ACTGG 3 cut(s) 20, 250, 422
BseRI GAGGAG 2 cut(s) 174, 455
BseSI GKGCMC 2 cut(s) 242, 417
BseXI GCAGC 3 cut(s) 131, 175, 463
BshFI GGCC 4 cut(s) 41, 95, 107, 197
BshNI GGYRCC 2 cut(s) 169, 237
BsiHKAI GWGCWC 1 cut(s) 417
BsiSI CCGG 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 125
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 4 cut(s) 41, 95, 107, 197
Bsp1286I GDGCHC 2 cut(s) 242, 417
Bsp1407I TGTACA 1 cut(s) 153
Bsp143I GATC 4 cut(s) 24, 115, 373, 385
Bsp1720I GCTNAGC 1 cut(s) 399
BspANI GGCC 4 cut(s) 41, 95, 107, 197
BspCNI CTCAG 1 cut(s) 511
BspLI GGNNCC 2 cut(s) 171, 239
BspPI GGATC 1 cut(s) 110
BspT107I GGYRCC 2 cut(s) 169, 237
BsrFI RCCGGY 1 cut(s) 91
BsrGI TGTACA 1 cut(s) 153
BsrI ACTGG 3 cut(s) 20, 250, 422
BssAI RCCGGY 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 119
BssMI GATC 4 cut(s) 24, 115, 373, 385
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 291
Bst4CI ACNGT 1 cut(s) 283
BstAUI TGTACA 1 cut(s) 153
BstC8I GCNNGC 3 cut(s) 93, 142, 405
BstDEI CTNAG 3 cut(s) 306, 399, 519
BstF5I GGATG 3 cut(s) 8, 184, 544
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 4 cut(s) 27, 118, 376, 388
BstMBI GATC 4 cut(s) 24, 115, 373, 385
BstMWI GCNNNNNNNGC 3 cut(s) 38, 194, 404
BstNI CCWGG 1 cut(s) 291
BstSCI CCNGG 1 cut(s) 289
BstSLI GKGCMC 2 cut(s) 242, 417
BstV1I GCAGC 3 cut(s) 131, 175, 463
BsuRI GGCC 4 cut(s) 41, 95, 107, 197
BtsCI GGATG 3 cut(s) 8, 184, 544
BtsIMutI CAGTG 2 cut(s) 27, 415
Cac8I GCNNGC 3 cut(s) 93, 142, 405
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 216
CsiI ACCWGGT 1 cut(s) 289
Csp6I GTAC 4 cut(s) 154, 170, 287, 547
CspCI CAANNNNNGTGG 2 cut(s) 331, 366
CviAII CATG 3 cut(s) 47, 125, 328
CviQI GTAC 4 cut(s) 154, 170, 287, 547
DdeI CTNAG 3 cut(s) 306, 399, 519
DpnI GATC 4 cut(s) 26, 117, 375, 387
DpnII GATC 4 cut(s) 24, 115, 373, 385
EaeI YGGCCR 2 cut(s) 105, 195
Eco130I CCWWGG 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 41
Eco47I GGWCC 1 cut(s) 216
Eco57I CTGAAG 1 cut(s) 375
EcoRII CCWGG 1 cut(s) 289
EcoT14I CCWWGG 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 119
FaeI CATG 3 cut(s) 50, 128, 331
FatI CATG 3 cut(s) 46, 124, 327
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 3 cut(s) 145, 189, 477
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 3 cut(s) 145, 189, 477
FspBI CTAG 3 cut(s) 120, 462, 550
GlaI GCGC 1 cut(s) 82
GluI GCNGC 3 cut(s) 145, 189, 477
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 4 cut(s) 41, 95, 107, 197
HapII CCGG 1 cut(s) 92
HhaI GCGC 1 cut(s) 83
Hin1II CATG 3 cut(s) 50, 128, 331
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HinfI GANTC 1 cut(s) 512
HpaII CCGG 1 cut(s) 92
HphI GGTGA 6 cut(s) 64, 308, 440, 458, 536, 545
Hpy166II GTNNAC 1 cut(s) 415
Hpy188I TCNGA 3 cut(s) 315, 390, 457
Hpy188III TCNNGA 2 cut(s) 205, 482
Hpy8I GTNNAC 1 cut(s) 415
HpyAV CCTTC 2 cut(s) 31, 481
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 3 cut(s) 17, 327, 415
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 194, 404
HpyF3I CTNAG 3 cut(s) 306, 399, 519
Hsp92II CATG 3 cut(s) 50, 128, 331
HspAI GCGC 1 cut(s) 81
KpnI GGTACC 1 cut(s) 173
KroI GCCGGC 1 cut(s) 91
KroNI GCCGGC 1 cut(s) 93
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 4 cut(s) 24, 115, 373, 385
LpnPI CCDG 8 cut(s) 33, 105, 161, 231, 276, 284, 303, 403
Lsp1109I GCAGC 3 cut(s) 131, 175, 463
MabI ACCWGGT 1 cut(s) 289
MaeI CTAG 3 cut(s) 120, 462, 550
MaeIII GTNAC 1 cut(s) 296
MalI GATC 4 cut(s) 26, 117, 375, 387
MboI GATC 4 cut(s) 24, 115, 373, 385
MboII GAAGA 2 cut(s) 509, 539
MhlI GDGCHC 2 cut(s) 242, 417
MlsI TGGCCA 2 cut(s) 107, 197
MluNI TGGCCA 2 cut(s) 107, 197
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 2 cut(s) 360, 489
Mox20I TGGCCA 2 cut(s) 107, 197
MroNI GCCGGC 1 cut(s) 91
MscI TGGCCA 2 cut(s) 107, 197
MslI CAYNNNNRTG 1 cut(s) 420
Msp20I TGGCCA 2 cut(s) 107, 197
MspA1I CMGCKG 1 cut(s) 518
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 291
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 1 cut(s) 291
MwoI GCNNNNNNNGC 3 cut(s) 38, 194, 404
NaeI GCCGGC 1 cut(s) 93
NdeII GATC 4 cut(s) 24, 115, 373, 385
NgoMIV GCCGGC 1 cut(s) 91
NlaIII CATG 3 cut(s) 50, 128, 331
NlaIV GGNNCC 2 cut(s) 171, 239
NmeAIII GCCGAG 1 cut(s) 58
NmuCI GTSAC 1 cut(s) 296
PceI AGGCCT 1 cut(s) 41
PctI GAATGC 1 cut(s) 190
PdiI GCCGGC 1 cut(s) 93
PkrI GCNGC 3 cut(s) 146, 190, 478
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
Psp6I CCWGG 1 cut(s) 289
PspGI CCWGG 1 cut(s) 289
PspN4I GGNNCC 2 cut(s) 171, 239
PspPI GGNCC 1 cut(s) 216
PvuII CAGCTG 1 cut(s) 518
RsaI GTAC 4 cut(s) 155, 171, 288, 548
RsaNI GTAC 4 cut(s) 154, 170, 287, 547
RseI CAYNNNNRTG 1 cut(s) 420
SatI GCNGC 3 cut(s) 145, 189, 477
Sau3AI GATC 4 cut(s) 24, 115, 373, 385
Sau96I GGNCC 1 cut(s) 216
ScaI AGTACT 1 cut(s) 548
SchI GAGTC 1 cut(s) 521
ScrFI CCNGG 1 cut(s) 291
SduI GDGCHC 2 cut(s) 242, 417
SetI ASST 4 cut(s) 292, 312, 463, 520
SexAI ACCWGGT 1 cut(s) 289
SinI GGWCC 1 cut(s) 216
SmiMI CAYNNNNRTG 1 cut(s) 420
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
SseBI AGGCCT 1 cut(s) 41
SspMI CTAG 3 cut(s) 120, 462, 550
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 289
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 283
TatI WGTACW 2 cut(s) 153, 546
TscAI CASTG 2 cut(s) 27, 422
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 3 cut(s) 144, 188, 476
Tsp45I GTSAC 1 cut(s) 296
TspDTI ATGAA 1 cut(s) 510
TspRI CASTG 2 cut(s) 27, 422
VneI GTGCAC 1 cut(s) 413
VpaK11BI GGWCC 1 cut(s) 216
XcmI CCANNNNNNNNNTGG 1 cut(s) 226
XmaJI CCTAGG 1 cut(s) 119
XspI CTAG 3 cut(s) 120, 462, 550
ZrmI AGTACT 1 cut(s) 548
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.