Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013741

Physical Location & Seq

Genomic Coordinates Reverse (-)

85993828 .. 85995009

Gene Structure 1182 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG640600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGTACGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAAGGCATGAAGGAAGGAGAGTTCTCTGAGGCCCGTGAGGATCTCGCTGCTCTGGAGAAGGATTATGAGGAGGTTGATGCCGAGTGTGCTGGGGAAGTTGATGGCGTAGTTTGGTTCAGTTTCCACTGGGTGGTTCCATTTGGGTGTTGGATAATAGGAAAGCAGCGTACTGGCAGATCTATTAGCATTCTCGCTATCTATGGTTTTGCATCCTTTGATGAATTTATACAGGATGGCATTGATCGGACAAGAGTTGAATTTGAAGGCAATCAGGATTGCCTGGGTCTTTTTGAAGGTTCGTTATCGATTAGATATCAGTGGGAAAATAAAGAGGATAAAAGAGTTAACTATGTATCAGATCGACCAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

136

Amino Acids

15.76

Weight (kDa)

4.59

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013741)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00460 pycom11g00420
rosa_chinensis	RchiOBHm_Chr2g0171661
rosa_multiflora	Rmu_sc0012935.1_g000007 Rmu_ssc0000252.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082710 Rroxscaffold_3G00228380
rosa_rugosa	Rorug02G0555100
rosa_samantha	Rh2AG605800 Rh2AG630100 Rh2BG640600 Rh2BG643100 Rh2CG587100 Rh2DG629400 Rh2DG651700 Rh5AG533300 Rh5CG583400 Rh5DG570000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	169
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	260, 296
AdeI	CACNNNGTG	1 cut(s)	169
AfaI	GTAC	2 cut(s)	5, 208
AfiI	CCNNNNNNNGG	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	296, 302, 332
AjnI	CCWGG	1 cut(s)	318
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	2 cut(s)	86, 202
ApoI	RAATTY	2 cut(s)	260, 296
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	73, 214
BccI	CCATC	2 cut(s)	134, 266
BciT130I	CCWGG	1 cut(s)	320
BglII	AGATCT	1 cut(s)	215
BisI	GCNGC	2 cut(s)	87, 203
BlsI	GCNGC	2 cut(s)	88, 204
Bme1390I	CCNGG	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	174
BmrFI	CCNGG	1 cut(s)	320
BmrI	ACTGGG	1 cut(s)	175
BmsI	GCATC	2 cut(s)	106, 257
BmuI	ACTGGG	1 cut(s)	175
BpmI	CTGGAG	1 cut(s)	113
Bsa29I	ATCGAT	1 cut(s)	344
BsaJI	CCNNGG	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	169
Bse1I	ACTGG	2 cut(s)	170, 214
BseBI	CCWGG	1 cut(s)	320
BseCI	ATCGAT	1 cut(s)	344
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	2 cut(s)	248, 277
BseLI	CCNNNNNNNGG	1 cut(s)	169
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	2 cut(s)	170, 214
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	73, 214
BseYI	CCCAGC	1 cut(s)	128
BshFI	GGCC	1 cut(s)	71
BshVI	ATCGAT	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	169
BsmI	GAATGC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	4 cut(s)	79, 215, 280, 397
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	58
BspDI	ATCGAT	1 cut(s)	344
BspLI	GGNNCC	1 cut(s)	174
BspPI	GGATC	1 cut(s)	87
BsrI	ACTGG	2 cut(s)	170, 214
BssECI	CCNNGG	1 cut(s)	319
BssMI	GATC	4 cut(s)	79, 215, 280, 397
Bst2UI	CCWGG	1 cut(s)	320
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	248, 277
BstKTI	GATC	4 cut(s)	82, 218, 283, 400
BstMBI	GATC	4 cut(s)	79, 215, 280, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 125
BstNI	CCWGG	1 cut(s)	320
BstSCI	CCNGG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	73, 214
BstX2I	RGATCY	2 cut(s)	79, 215
BstYI	RGATCY	2 cut(s)	79, 215
Bsu15I	ATCGAT	1 cut(s)	344
BsuRI	GGCC	1 cut(s)	71
BsuTUI	ATCGAT	1 cut(s)	344
BtsCI	GGATG	2 cut(s)	248, 277
BtsIMutI	CAGTG	2 cut(s)	163, 362
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	70
ClaI	ATCGAT	1 cut(s)	344
Csp6I	GTAC	2 cut(s)	4, 207
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	1 cut(s)	71
CviKI_1	RGCY	1 cut(s)	71
CviQI	GTAC	2 cut(s)	4, 207
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	4 cut(s)	81, 217, 282, 399
DpnII	GATC	4 cut(s)	79, 215, 280, 397
DraIII	CACNNNGTG	1 cut(s)	169
Eco32I	GATATC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	318
EcoRV	GATATC	1 cut(s)	353
FaeI	CATG	1 cut(s)	49
FaiI	YATR	6 cut(s)	33, 47, 105, 240, 266, 390
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	87, 203
FokI	GGATG	2 cut(s)	235, 284
Fsp4HI	GCNGC	2 cut(s)	87, 203
GluI	GCNGC	2 cut(s)	87, 203
GsaI	CCCAGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	49
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HpaI	GTTAAC	1 cut(s)	385
HphI	GGTGA	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	3 cut(s)	67, 285, 397
Hpy188III	TCNNGA	2 cut(s)	92, 311
Hpy8I	GTNNAC	1 cut(s)	385
HpyAV	CCTTC	6 cut(s)	35, 43, 47, 91, 296, 326
HpyCH4V	TGCA	2 cut(s)	25, 248
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 125
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	49
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	4 cut(s)	79, 215, 280, 397
LpnPI	CCDG	8 cut(s)	77, 114, 151, 195, 254, 296, 305, 332
Lsp1109I	GCAGC	2 cut(s)	73, 214
LweI	GCATC	2 cut(s)	106, 257
MalI	GATC	4 cut(s)	81, 217, 282, 399
MboI	GATC	4 cut(s)	79, 215, 280, 397
MflI	RGATCY	2 cut(s)	79, 215
MluCI	AATT	3 cut(s)	260, 296, 406
MmeI	TCCRAC	1 cut(s)	167
MnlI	CCTC	5 cut(s)	61, 70, 100, 103, 364
MseI	TTAA	1 cut(s)	384
MslI	CAYNNNNRTG	2 cut(s)	30, 181
MspR9I	CCNGG	1 cut(s)	320
Mva1269I	GAATGC	1 cut(s)	225
MvaI	CCWGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	14, 125
NdeII	GATC	4 cut(s)	79, 215, 280, 397
NlaIII	CATG	1 cut(s)	49
NlaIV	GGNNCC	1 cut(s)	174
NmeAIII	GCCGAG	1 cut(s)	145
PctI	GAATGC	1 cut(s)	225
PflMI	CCANNNNNTGG	1 cut(s)	169
PkrI	GCNGC	2 cut(s)	88, 204
Psp6I	CCWGG	1 cut(s)	318
PspFI	CCCAGC	1 cut(s)	128
PspGI	CCWGG	1 cut(s)	318
PspN4I	GGNNCC	1 cut(s)	174
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	79, 215
RsaI	GTAC	2 cut(s)	5, 208
RsaNI	GTAC	2 cut(s)	4, 207
RseI	CAYNNNNRTG	2 cut(s)	30, 181
SaqAI	TTAA	1 cut(s)	384
SatI	GCNGC	2 cut(s)	87, 203
Sau3AI	GATC	4 cut(s)	79, 215, 280, 397
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	320
SetI	ASST	2 cut(s)	114, 337
SfaNI	GCATC	2 cut(s)	106, 257
SmiMI	CAYNNNNRTG	2 cut(s)	30, 181
Sse9I	AATT	3 cut(s)	260, 296, 406
StyD4I	CCNGG	1 cut(s)	318
TaqI	TCGA	2 cut(s)	344, 400
TasI	AATT	3 cut(s)	260, 296, 406
Tru1I	TTAA	1 cut(s)	384
Tru9I	TTAA	1 cut(s)	384
TscAI	CASTG	2 cut(s)	170, 362
TseI	GCWGC	2 cut(s)	86, 202
TspDTI	ATGAA	2 cut(s)	62, 273
TspRI	CASTG	2 cut(s)	170, 362
Van91I	CCANNNNNTGG	1 cut(s)	169
XapI	RAATTY	2 cut(s)	260, 296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.