Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0013741

Physical Location & Seq

Genomic Coordinates Reverse (-)

86185068 .. 86186346

Gene Structure 1279 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG643100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGTACGCCAAGCGTGCTTTTGTGCATTGGTATGTGGGTGAGGGCATGGAGGAAGGAGAGTTCTCTGAGGCCAGTGAGGATCTCGCTGCTCTGGAGAAGGATTATGAGGAGGTTGATGCCGAAACTATGATAATGAGGGGAAGGAAGAAGGACCAAAGATTTGGTGTTGAGCCAATGATGAAAGAGACTGTGAATTTATACAGGATGGCATTGATCGGACAAGAGTTGAATTTGAAGGCAACCAGGATTGCCTTGGTCTTTTTGAAGTATGATGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tubulin_C

Protein Analysis

92

Amino Acids

10.69

Weight (kDa)

4.9

Isoelectric Point (pI)

28.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0013741)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00460 pycom11g00420
rosa_chinensis	RchiOBHm_Chr2g0171661
rosa_multiflora	Rmu_sc0012935.1_g000007 Rmu_ssc0000252.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082710 Rroxscaffold_3G00228380
rosa_rugosa	Rorug02G0555100
rosa_samantha	Rh2AG605800 Rh2AG630100 Rh2BG640600 Rh2BG643100 Rh2CG587100 Rh2DG629400 Rh2DG651700 Rh5AG533300 Rh5CG583400 Rh5DG570000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	87
AcsI	RAATTY	2 cut(s)	193, 229
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	229, 235, 265
AjnI	CCWGG	1 cut(s)	242
AloI	GAACNNNNNNTCC	2 cut(s)	44, 76
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	87
AoxI	GGCC	1 cut(s)	69
ApeKI	GCWGC	1 cut(s)	86
ApoI	RAATTY	2 cut(s)	193, 229
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspS9I	GGNCC	1 cut(s)	151
AsuHPI	GGTGA	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	73
BccI	CCATC	2 cut(s)	199, 266
BciT130I	CCWGG	1 cut(s)	244
BcoDI	GTCTC	1 cut(s)	179
BisI	GCNGC	1 cut(s)	87
BlsI	GCNGC	1 cut(s)	88
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	252
Bse1I	ACTGG	1 cut(s)	72
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	57
BseNI	ACTGG	1 cut(s)	72
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	1 cut(s)	73
BshFI	GGCC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	179
BsnI	GGCC	1 cut(s)	71
Bsp143I	GATC	2 cut(s)	79, 213
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	58
BspPI	GGATC	1 cut(s)	87
BsrI	ACTGG	1 cut(s)	72
BssECI	CCNNGG	1 cut(s)	252
BssMI	GATC	2 cut(s)	79, 213
BssT1I	CCWWGG	1 cut(s)	252
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	15
BstDEI	CTNAG	1 cut(s)	66
BstF5I	GGATG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	82, 216
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	2 cut(s)	79, 213
BstMWI	GCNNNNNNNGC	1 cut(s)	14
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	1 cut(s)	73
BstX2I	RGATCY	1 cut(s)	79
BstXI	CCANNNNNNTGG	1 cut(s)	161
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	1 cut(s)	71
BtsCI	GGATG	1 cut(s)	210
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	1 cut(s)	46
CviJI	RGCY	2 cut(s)	71, 172
CviKI_1	RGCY	2 cut(s)	71, 172
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	66
DpnI	GATC	2 cut(s)	81, 215
DpnII	GATC	2 cut(s)	79, 213
Eco130I	CCWWGG	1 cut(s)	252
Eco47I	GGWCC	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	252
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	49
FaiI	YATR	6 cut(s)	33, 47, 105, 128, 199, 270
FatI	CATG	1 cut(s)	45
Fnu4HI	GCNGC	1 cut(s)	87
FokI	GGATG	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	87
GluI	GCNGC	1 cut(s)	87
GsuI	CTGGAG	1 cut(s)	113
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	67, 218
Hpy188III	TCNNGA	1 cut(s)	92
HpyAV	CCTTC	5 cut(s)	47, 91, 135, 142, 229
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	1 cut(s)	25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	14
HpyF3I	CTNAG	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	49
Kzo9I	GATC	2 cut(s)	79, 213
LpnPI	CCDG	5 cut(s)	77, 85, 187, 229, 256
Lsp1109I	GCAGC	1 cut(s)	73
LweI	GCATC	1 cut(s)	106
MalI	GATC	2 cut(s)	81, 215
MboI	GATC	2 cut(s)	79, 213
MboII	GAAGA	1 cut(s)	157
MflI	RGATCY	1 cut(s)	79
MluCI	AATT	2 cut(s)	193, 229
MnlI	CCTC	7 cut(s)	34, 43, 61, 70, 100, 103, 129
MslI	CAYNNNNRTG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	14
NdeII	GATC	2 cut(s)	79, 213
NlaIII	CATG	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	30
SatI	GCNGC	1 cut(s)	87
Sau3AI	GATC	2 cut(s)	79, 213
Sau96I	GGNCC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	244
SetI	ASST	1 cut(s)	114
SfaNI	GCATC	1 cut(s)	106
SinI	GGWCC	1 cut(s)	151
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	2 cut(s)	193, 229
StyD4I	CCNGG	1 cut(s)	242
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	1 cut(s)	190
TasI	AATT	2 cut(s)	193, 229
TscAI	CASTG	1 cut(s)	79
TseI	GCWGC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	79
VpaK11BI	GGWCC	1 cut(s)	151
XapI	RAATTY	2 cut(s)	193, 229
XcmI	CCANNNNNNNNNTGG	1 cut(s)	250

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.