Rmu_ssc0000252.1_g000008

structural constituent of cytoskeleton

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000252.1
OG0013741
Physical Location & Seq
Reverse (-)
36341 .. 39120
2780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000252.1_g000008.1.cds

Sequence Viewer

Length: 831 bp
atgacagtttggctgctttgtcgtctttgcagtcaggggaagagaaccggtctttggatcggccggcgtaattgggtcttcgatggcggaactggtctatgggttgctctcttgcagagtggtggttggcttttgcactggtggatggccttgatgcatgtgatgctggagtcactggtgttgtacggattgtgggtttgtctgatcagggtttgggttgatctggtggtgtacggtggcgactggtttctggttttgtggtggcccgaaagtcaacttggtaagacgtcaacaccggaaatacagaggctaacgaagcttgtcgtgcaacatcgtggccgggtgtctgacgggagatgggtgtacagatcagttctggccaaattattgggcttcttttgggcccaaatcaggatctttgtgatgggtttatgctctccagcagggtggatttgggacggcggtagaaaggccaagcgtcggcggtggtcggatcagggcgcaggactgaccttcaagcatagcctaaggagcaacctgtttccgaggttgttggctactgaggaggctgaggatggtgtcggtagcaatactgttggtgatagactgaagaaagaagaagaagagagaatctgtatgatagttatattatgtgatatcaactatgtaccagccacccacactgttgttcccggcggtgaccttgctaagcgtgcttttgtgcattggtatgtgggtgagggcatggaggaaggagagttctctgaggcccgtgaggatctcgctgctctggagaaggattatgaggaggttgatgccgagtgtgcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130
Pfam Domains
Protein Families
Tubulin Tubulin_C

Protein Analysis

276

Amino Acids

31.62

Weight (kDa)

6.61

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 290
AciI CCGC 4 cut(s) 87, 462, 484, 696
AclWI GGATC 4 cut(s) 65, 422, 501, 786
AcoI YGGCCR 3 cut(s) 61, 337, 378
AcuI CTGAAG 1 cut(s) 629
AcyI GRCGYC 1 cut(s) 287
AfaI GTAC 4 cut(s) 185, 233, 365, 669
AfiI CCNNNNNNNGG 3 cut(s) 54, 411, 480
AgeI ACCGGT 1 cut(s) 47
AgsI TTSAA 1 cut(s) 517
AjuI GAANNNNNNNTTGG 4 cut(s) 37, 69, 261, 293
AloI GAACNNNNNNTCC 2 cut(s) 743, 775
AluBI AGCT 1 cut(s) 319
AluI AGCT 1 cut(s) 319
AlwI GGATC 4 cut(s) 65, 422, 501, 786
AoxI GGCC 8 cut(s) 61, 147, 263, 337, 378, 402, 471, 768
ApaI GGGCCC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 13, 785
AsiGI ACCGGT 1 cut(s) 47
AspLEI GCGC 1 cut(s) 503
AspS9I GGNCC 4 cut(s) 264, 402, 403, 769
AsuC2I CCSGG 2 cut(s) 341, 693
AsuHPI GGTGA 3 cut(s) 611, 710, 749
AxyI CCTNAGG 1 cut(s) 527
BaeGI GKGCMC 1 cut(s) 406
BalI TGGCCA 1 cut(s) 380
BanII GRGCYC 1 cut(s) 406
BbsI GAAGAC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 772
BccI CCATC 5 cut(s) 77, 139, 351, 418, 569
BceAI ACGGC 1 cut(s) 475
BclI TGATCA 1 cut(s) 204
BcnI CCSGG 2 cut(s) 341, 693
BisI GCNGC 2 cut(s) 14, 786
BlpI GCTNAGC 1 cut(s) 708
BlsI GCNGC 2 cut(s) 15, 787
Bme1390I CCNGG 2 cut(s) 341, 693
BmgT120I GGNCC 4 cut(s) 264, 402, 403, 769
BmiI GGNNCC 1 cut(s) 404
BmrFI CCNGG 2 cut(s) 341, 693
BmsI GCATC 3 cut(s) 144, 153, 805
BpiI GAAGAC 1 cut(s) 70
BpmI CTGGAG 3 cut(s) 188, 423, 812
Bpu10I CCTNAGC 1 cut(s) 570
Bpu1102I GCTNAGC 1 cut(s) 708
BpuMI CCSGG 2 cut(s) 341, 693
BsaHI GRCGYC 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 545
BsaWI WCCGGW 2 cut(s) 47, 295
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 411, 480
Bse118I RCCGGY 2 cut(s) 47, 63
Bse1I ACTGG 4 cut(s) 97, 143, 180, 248
Bse21I CCTNAGG 1 cut(s) 527
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 2 cut(s) 150, 580
BseLI CCNNNNNNNGG 3 cut(s) 54, 411, 480
BseMII CTCAG 3 cut(s) 552, 561, 756
BseNI ACTGG 4 cut(s) 97, 143, 180, 248
BseRI GAGGAG 2 cut(s) 578, 821
BseSI GKGCMC 1 cut(s) 406
BseX3I CGGCCG 1 cut(s) 61
BseXI GCAGC 1 cut(s) 772
Bsh1285I CGRYCG 1 cut(s) 64
BshFI GGCC 8 cut(s) 63, 149, 265, 339, 380, 404, 473, 770
BshTI ACCGGT 1 cut(s) 47
BsiEI CGRYCG 1 cut(s) 64
BsiSI CCGG 5 cut(s) 48, 64, 296, 340, 693
BslFI GGGAC 1 cut(s) 470
BslI CCNNNNNNNGG 3 cut(s) 54, 411, 480
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 8 cut(s) 63, 149, 265, 339, 380, 404, 473, 770
Bsp120I GGGCCC 1 cut(s) 402
Bsp1286I GDGCHC 1 cut(s) 406
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 7 cut(s) 57, 204, 220, 368, 414, 493, 778
Bsp1720I GCTNAGC 1 cut(s) 708
BspACI CCGC 4 cut(s) 87, 462, 484, 696
BspANI GGCC 8 cut(s) 63, 149, 265, 339, 380, 404, 473, 770
BspCNI CTCAG 3 cut(s) 553, 562, 757
BspLI GGNNCC 1 cut(s) 404
BspPI GGATC 4 cut(s) 65, 422, 501, 786
BsrFI RCCGGY 2 cut(s) 47, 63
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 4 cut(s) 97, 143, 180, 248
BssAI RCCGGY 2 cut(s) 47, 63
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 7 cut(s) 57, 204, 220, 368, 414, 493, 778
BssNI GRCGYC 1 cut(s) 287
Bst4CI ACNGT 4 cut(s) 7, 236, 595, 685
Bst6I CTCTTC 2 cut(s) 35, 618
BstACI GRCGYC 1 cut(s) 287
BstAPI GCANNNNNTGC 1 cut(s) 163
BstAUI TGTACA 1 cut(s) 363
BstC8I GCNNGC 2 cut(s) 65, 714
BstDEI CTNAG 6 cut(s) 527, 561, 570, 708, 765, 828
BstEII GGTNACC 1 cut(s) 698
BstF5I GGATG 2 cut(s) 150, 580
BstHHI GCGC 1 cut(s) 503
BstKTI GATC 7 cut(s) 60, 207, 223, 371, 417, 496, 781
BstMBI GATC 7 cut(s) 57, 204, 220, 368, 414, 493, 778
BstMCI CGRYCG 1 cut(s) 64
BstMWI GCNNNNNNNGC 6 cut(s) 163, 316, 325, 531, 713, 824
BstNSI RCATGY 1 cut(s) 161
BstPI GGTNACC 1 cut(s) 698
BstSCI CCNGG 2 cut(s) 339, 691
BstSLI GKGCMC 1 cut(s) 406
BstV1I GCAGC 1 cut(s) 772
BstV2I GAAGAC 1 cut(s) 70
BstX2I RGATCY 2 cut(s) 414, 778
BstXI CCANNNNNNTGG 2 cut(s) 388, 447
BstYI RGATCY 2 cut(s) 414, 778
BstZI CGGCCG 1 cut(s) 61
Bsu36I CCTNAGG 1 cut(s) 527
BsuRI GGCC 8 cut(s) 63, 149, 265, 339, 380, 404, 473, 770
BtsCI GGATG 2 cut(s) 150, 580
BtsIMutI CAGTG 3 cut(s) 136, 173, 681
Cac8I GCNNGC 2 cut(s) 65, 714
CfoI GCGC 1 cut(s) 503
Cfr10I RCCGGY 2 cut(s) 47, 63
Cfr13I GGNCC 4 cut(s) 264, 402, 403, 769
CseI GACGC 1 cut(s) 467
Csp6I GTAC 4 cut(s) 184, 232, 364, 668
CspAI ACCGGT 1 cut(s) 47
CviAII CATG 2 cut(s) 158, 745
CviQI GTAC 4 cut(s) 184, 232, 364, 668
DdeI CTNAG 6 cut(s) 527, 561, 570, 708, 765, 828
DpnI GATC 7 cut(s) 59, 206, 222, 370, 416, 495, 780
DpnII GATC 7 cut(s) 57, 204, 220, 368, 414, 493, 778
EaeI YGGCCR 3 cut(s) 61, 337, 378
EagI CGGCCG 1 cut(s) 61
Eam1104I CTCTTC 2 cut(s) 35, 618
EarI CTCTTC 2 cut(s) 35, 618
EciI GGCGGA 1 cut(s) 102
EclXI CGGCCG 1 cut(s) 61
Eco24I GRGCYC 1 cut(s) 406
Eco32I GATATC 1 cut(s) 658
Eco52I CGGCCG 1 cut(s) 61
Eco57I CTGAAG 1 cut(s) 629
Eco81I CCTNAGG 1 cut(s) 527
Eco91I GGTNACC 1 cut(s) 698
EcoO65I GGTNACC 1 cut(s) 698
EcoRV GATATC 1 cut(s) 658
EcoT22I ATGCAT 1 cut(s) 159
EcoT38I GRGCYC 1 cut(s) 406
FaeI CATG 2 cut(s) 161, 748
FaqI GGGAC 1 cut(s) 470
FatI CATG 2 cut(s) 157, 744
FbaI TGATCA 1 cut(s) 204
Fnu4HI GCNGC 2 cut(s) 14, 786
FokI GGATG 2 cut(s) 157, 587
FriOI GRGCYC 1 cut(s) 406
Fsp4HI GCNGC 2 cut(s) 14, 786
GlaI GCGC 1 cut(s) 502
GluI GCNGC 2 cut(s) 14, 786
GsuI CTGGAG 3 cut(s) 188, 423, 812
HaeIII GGCC 8 cut(s) 63, 149, 265, 339, 380, 404, 473, 770
HapII CCGG 5 cut(s) 48, 64, 296, 340, 693
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 503
Hin1I GRCGYC 1 cut(s) 287
Hin1II CATG 2 cut(s) 161, 748
Hin6I GCGC 1 cut(s) 501
HinP1I GCGC 1 cut(s) 501
HincII GTYRAC 2 cut(s) 275, 291
HindII GTYRAC 2 cut(s) 275, 291
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 2 cut(s) 170, 630
HpaII CCGG 5 cut(s) 48, 64, 296, 340, 693
HphI GGTGA 3 cut(s) 611, 710, 749
Hpy166II GTNNAC 4 cut(s) 232, 275, 291, 364
Hpy188I TCNGA 5 cut(s) 204, 349, 493, 546, 766
Hpy188III TCNNGA 2 cut(s) 412, 791
Hpy8I GTNNAC 4 cut(s) 232, 275, 291, 364
Hpy99I CGWCG 1 cut(s) 483
HpyAV CCTTC 3 cut(s) 523, 746, 790
HpyCH4III ACNGT 4 cut(s) 7, 236, 595, 685
HpyCH4IV ACGT 1 cut(s) 287
HpyCH4V TGCA 6 cut(s) 30, 115, 136, 157, 328, 724
HpyF10VI GCNNNNNNNGC 6 cut(s) 163, 316, 325, 531, 713, 824
HpyF3I CTNAG 6 cut(s) 527, 561, 570, 708, 765, 828
HpySE526I ACGT 1 cut(s) 287
Hsp92I GRCGYC 1 cut(s) 287
Hsp92II CATG 2 cut(s) 161, 748
HspAI GCGC 1 cut(s) 501
KroI GCCGGC 1 cut(s) 63
KroNI GCCGGC 1 cut(s) 65
Ksp22I TGATCA 1 cut(s) 204
Kzo9I GATC 7 cut(s) 57, 204, 220, 368, 414, 493, 778
LmnI GCTCC 1 cut(s) 531
Lsp1109I GCAGC 1 cut(s) 772
LweI GCATC 3 cut(s) 144, 153, 805
MaeII ACGT 1 cut(s) 287
MaeIII GTNAC 2 cut(s) 171, 698
MalI GATC 7 cut(s) 59, 206, 222, 370, 416, 495, 780
MboI GATC 7 cut(s) 57, 204, 220, 368, 414, 493, 778
MboII GAAGA 6 cut(s) 52, 70, 622, 629, 632, 635
MflI RGATCY 2 cut(s) 414, 778
MhlI GDGCHC 1 cut(s) 406
MlsI TGGCCA 1 cut(s) 380
MluCI AATT 2 cut(s) 70, 383
MluNI TGGCCA 1 cut(s) 380
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 471
Mox20I TGGCCA 1 cut(s) 380
Mph1103I ATGCAT 1 cut(s) 159
MroNI GCCGGC 1 cut(s) 63
MscI TGGCCA 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 729
Msp20I TGGCCA 1 cut(s) 380
MspI CCGG 5 cut(s) 48, 64, 296, 340, 693
MspR9I CCNGG 2 cut(s) 341, 693
MwoI GCNNNNNNNGC 6 cut(s) 163, 316, 325, 531, 713, 824
NaeI GCCGGC 1 cut(s) 65
NciI CCSGG 2 cut(s) 341, 693
NdeII GATC 7 cut(s) 57, 204, 220, 368, 414, 493, 778
NgoMIV GCCGGC 1 cut(s) 63
NlaIII CATG 2 cut(s) 161, 748
NlaIV GGNNCC 1 cut(s) 404
NmuCI GTSAC 2 cut(s) 171, 698
NsiI ATGCAT 1 cut(s) 159
NspI RCATGY 1 cut(s) 161
PdiI GCCGGC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 630
PinAI ACCGGT 1 cut(s) 47
PkrI GCNGC 2 cut(s) 15, 787
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PspEI GGTNACC 1 cut(s) 698
PspN4I GGNNCC 1 cut(s) 404
PspOMI GGGCCC 1 cut(s) 402
PspPI GGNCC 4 cut(s) 264, 402, 403, 769
PsuI RGATCY 2 cut(s) 414, 778
RsaI GTAC 4 cut(s) 185, 233, 365, 669
RsaNI GTAC 4 cut(s) 184, 232, 364, 668
RseI CAYNNNNRTG 1 cut(s) 729
SatI GCNGC 2 cut(s) 14, 786
Sau3AI GATC 7 cut(s) 57, 204, 220, 368, 414, 493, 778
Sau96I GGNCC 4 cut(s) 264, 402, 403, 769
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 2 cut(s) 341, 693
SduI GDGCHC 1 cut(s) 406
SetI ASST 7 cut(s) 290, 321, 515, 540, 551, 705, 813
SfaNI GCATC 3 cut(s) 144, 153, 805
SmiMI CAYNNNNRTG 1 cut(s) 729
Sse9I AATT 2 cut(s) 70, 383
SsiI CCGC 4 cut(s) 87, 462, 484, 696
StyD4I CCNGG 2 cut(s) 339, 691
TaaI ACNGT 4 cut(s) 7, 236, 595, 685
TaiI ACGT 1 cut(s) 290
TaqI TCGA 1 cut(s) 81
TasI AATT 2 cut(s) 70, 383
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 1 cut(s) 630
TscAI CASTG 3 cut(s) 143, 180, 688
TseFI GTSAC 2 cut(s) 171, 698
TseI GCWGC 2 cut(s) 13, 785
Tsp45I GTSAC 2 cut(s) 171, 698
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 3 cut(s) 143, 180, 688
XceI RCATGY 1 cut(s) 161
ZraI GACGTC 1 cut(s) 288
Zsp2I ATGCAT 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.