Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013741

Physical Location & Seq

Genomic Coordinates Reverse (-)

91521348 .. 91523746

Gene Structure 2399 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG533300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGAGAGAGATCATAAGCATTCATATTGGGCAGGCAGGTATTCAGGTGGGAAATTCATGCTGGGAGCTCTATTGTCTTGAGCATGGAATTCAGCCTGATGGTCAGATGCCTAGTGACAACACAATAGGTGTTGGAAGGGATGCTTTCAATACCTTCTTCAGTGAGACTGGATCAGGCAAGCATACTAACCTTGTCCCATATCCACGTATCCATTTCATGCTCTCCTCATATGCTCCTGTCATCTCAGCTGCAAAGGCATACCATGAGCAGATCTCTGTTCCTGAGATCACCAATGCAGTTTTTGAGCCCTCAAGCATGATGGCGAAGTGTGATCCCAGGCATGGCAAGTACATGGCGTGCTGCTTAATGTACAGGGGAGATGTTGTTCCCAAGGACGTTAACGCTGCTGTTGCAACTATCAAAACAAAAAGGACTGTACAGTGCCCAACTGGCTTCAAGTGCGGTATTAACTATGAACCTCCAACAGTTGTACCTGGGGGTGATCTGGCCAAGGTGCAGCGAGCAGTTTGCATGATCAGCAACAACACAGCAGTGGCTGAGGTGTTCTCACGCATTGACCACAAGTTTGATCTCATGTACTCAAAGAGGGCTTTCGTCCACTGGTATGTTGGTGAAGGCATGGAAGAAGGAGAGTTCTCAGAAGCCCGTGAAGATCTGGCTGCACTTGAGAAAGATTACGAGGAAGTTGGTGCTGAAGGTGTGGATGATGAAGAGGGGGGAAGTGAGGATTACGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04145 ko04210 ko04530 ko04540 ko05130 map04145 map04210 map04530 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

253

Amino Acids

27.92

Weight (kDa)

4.91

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	3 - 61	9.4e-10	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	68 - 193	5.1e-45	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013741)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g00460 pycom11g00420
rosa_chinensis	RchiOBHm_Chr2g0171661
rosa_multiflora	Rmu_sc0012935.1_g000007 Rmu_ssc0000252.1_g000008
rosa_roxburghii	Rroxscaffold_2G00082710 Rroxscaffold_3G00228380
rosa_rugosa	Rorug02G0555100
rosa_samantha	Rh2AG605800 Rh2AG630100 Rh2BG640600 Rh2BG643100 Rh2CG587100 Rh2DG629400 Rh2DG651700 Rh5AG533300 Rh5CG583400 Rh5DG570000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	26
AciI	CCGC	1 cut(s)	462
AclWI	GGATC	2 cut(s)	178, 326
AcoI	YGGCCR	1 cut(s)	507
AcsI	RAATTY	2 cut(s)	52, 87
AcuI	CTGAAG	2 cut(s)	142, 735
AfaI	GTAC	5 cut(s)	350, 371, 438, 492, 599
AfiI	CCNNNNNNNGG	1 cut(s)	341
AgsI	TTSAA	2 cut(s)	148, 457
AjnI	CCWGG	2 cut(s)	335, 493
AleI	CACNNNNGTG	1 cut(s)	551
AloI	GAACNNNNNNTCC	2 cut(s)	369, 401
AluBI	AGCT	2 cut(s)	67, 248
AluI	AGCT	2 cut(s)	67, 248
Alw21I	GWGCWC	1 cut(s)	69
Alw26I	GTCTC	1 cut(s)	158
AlwI	GGATC	2 cut(s)	178, 326
AlwNI	CAGNNNCTG	1 cut(s)	557
AoxI	GGCC	1 cut(s)	507
ApeKI	GCWGC	5 cut(s)	248, 360, 404, 517, 680
ApoI	RAATTY	2 cut(s)	52, 87
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
AsuHPI	GGTGA	3 cut(s)	280, 512, 644
BaeGI	GKGCMC	1 cut(s)	446
BaeI	ACNNNNGTAYC	2 cut(s)	474, 507
BalI	TGGCCA	1 cut(s)	509
BanII	GRGCYC	2 cut(s)	69, 309
Bbv12I	GWGCWC	1 cut(s)	69
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	5 cut(s)	235, 347, 391, 529, 667
BccI	CCATC	2 cut(s)	92, 313
BcgI	CGANNNNNNTGC	2 cut(s)	510, 544
BciT130I	CCWGG	2 cut(s)	337, 495
BciVI	GTATCC	1 cut(s)	218
BclI	TGATCA	1 cut(s)	534
BcoDI	GTCTC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	111
BfuAI	ACCTGC	1 cut(s)	26
BfuI	GTATCC	1 cut(s)	218
BglI	GCCNNNNNGGC	1 cut(s)	450
BglII	AGATCT	2 cut(s)	270, 673
BisI	GCNGC	5 cut(s)	249, 361, 405, 518, 681
BlsI	GCNGC	5 cut(s)	250, 362, 406, 519, 682
Bme1390I	CCNGG	2 cut(s)	337, 495
BmrFI	CCNGG	2 cut(s)	337, 495
BmsI	GCATC	2 cut(s)	96, 130
BplI	GAGNNNNNCTC	4 cut(s)	257, 289, 551, 583
Bpu10I	CCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	3 cut(s)	98, 295, 707
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	4 cut(s)	335, 390, 494, 510
BsaXI	ACNNNNNCTCC	2 cut(s)	369, 399
Bsc4I	CCNNNNNNNGG	1 cut(s)	341
Bse1I	ACTGG	3 cut(s)	172, 454, 626
BseBI	CCWGG	2 cut(s)	337, 495
BseDI	CCNNGG	4 cut(s)	335, 390, 494, 510
BseGI	GGATG	2 cut(s)	145, 730
BseLI	CCNNNNNNNGG	1 cut(s)	341
BseMII	CTCAG	4 cut(s)	258, 273, 549, 672
BseNI	ACTGG	3 cut(s)	172, 454, 626
BseRI	GAGGAG	1 cut(s)	214
BseSI	GKGCMC	1 cut(s)	446
BseXI	GCAGC	5 cut(s)	235, 347, 391, 529, 667
BseYI	CCCAGC	1 cut(s)	60
BsgI	GTGCAG	2 cut(s)	536, 666
BshFI	GGCC	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	69
BslFI	GGGAC	1 cut(s)	179
BslI	CCNNNNNNNGG	1 cut(s)	341
BsmAI	GTCTC	1 cut(s)	158
BsmFI	GGGAC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	18
BsnI	GGCC	1 cut(s)	509
Bsp1286I	GDGCHC	3 cut(s)	69, 309, 446
Bsp1407I	TGTACA	2 cut(s)	369, 436
Bsp143I	GATC	9 cut(s)	9, 170, 270, 285, 331, 502, 534, 589, 673
BspACI	CCGC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	509
BspCNI	CTCAG	4 cut(s)	257, 274, 550, 671
BspMI	ACCTGC	1 cut(s)	26
BspPI	GGATC	2 cut(s)	178, 326
BsrGI	TGTACA	2 cut(s)	369, 436
BsrI	ACTGG	3 cut(s)	172, 454, 626
BssECI	CCNNGG	4 cut(s)	335, 390, 494, 510
BssMI	GATC	9 cut(s)	9, 170, 270, 285, 331, 502, 534, 589, 673
BssT1I	CCWWGG	2 cut(s)	390, 510
Bst2UI	CCWGG	2 cut(s)	337, 495
Bst4CI	ACNGT	3 cut(s)	436, 441, 487
Bst6I	CTCTTC	1 cut(s)	726
BstAUI	TGTACA	2 cut(s)	369, 436
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	4 cut(s)	33, 179, 358, 522
BstDEI	CTNAG	4 cut(s)	244, 282, 558, 658
BstF5I	GGATG	2 cut(s)	145, 730
BstKTI	GATC	9 cut(s)	12, 173, 273, 288, 334, 505, 537, 592, 676
BstMAI	GTCTC	1 cut(s)	158
BstMBI	GATC	9 cut(s)	9, 170, 270, 285, 331, 502, 534, 589, 673
BstMWI	GCNNNNNNNGC	5 cut(s)	254, 410, 450, 459, 537
BstNI	CCWGG	2 cut(s)	337, 495
BstSCI	CCNGG	2 cut(s)	335, 493
BstSLI	GKGCMC	1 cut(s)	446
BstV1I	GCAGC	5 cut(s)	235, 347, 391, 529, 667
BstX2I	RGATCY	2 cut(s)	270, 673
BstYI	RGATCY	2 cut(s)	270, 673
BsuI	GTATCC	1 cut(s)	218
BsuRI	GGCC	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	145, 730
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	4 cut(s)	166, 446, 558, 619
BveI	ACCTGC	1 cut(s)	26
Cac8I	GCNNGC	4 cut(s)	33, 179, 358, 522
CaiI	CAGNNNCTG	1 cut(s)	557
Csp6I	GTAC	5 cut(s)	349, 370, 437, 491, 598
CviQI	GTAC	5 cut(s)	349, 370, 437, 491, 598
DdeI	CTNAG	4 cut(s)	244, 282, 558, 658
DpnI	GATC	9 cut(s)	11, 172, 272, 287, 333, 504, 536, 591, 675
DpnII	GATC	9 cut(s)	9, 170, 270, 285, 331, 502, 534, 589, 673
EaeI	YGGCCR	1 cut(s)	507
Eam1104I	CTCTTC	1 cut(s)	726
EarI	CTCTTC	1 cut(s)	726
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	2 cut(s)	390, 510
Eco24I	GRGCYC	2 cut(s)	69, 309
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	142, 735
EcoICRI	GAGCTC	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	87
EcoRII	CCWGG	2 cut(s)	335, 493
EcoT14I	CCWWGG	2 cut(s)	390, 510
EcoT38I	GRGCYC	2 cut(s)	69, 309
ErhI	CCWWGG	2 cut(s)	390, 510
FalI	AAGNNNNNCTT	2 cut(s)	127, 159
FaqI	GGGAC	1 cut(s)	179
FauNDI	CATATG	1 cut(s)	229
FbaI	TGATCA	1 cut(s)	534
Fnu4HI	GCNGC	5 cut(s)	249, 361, 405, 518, 681
FokI	GGATG	2 cut(s)	152, 737
FriOI	GRGCYC	2 cut(s)	69, 309
Fsp4HI	GCNGC	5 cut(s)	249, 361, 405, 518, 681
FspBI	CTAG	1 cut(s)	111
GluI	GCNGC	5 cut(s)	249, 361, 405, 518, 681
GsaI	CCCAGC	1 cut(s)	64
HaeIII	GGCC	1 cut(s)	509
HincII	GTYRAC	1 cut(s)	400
HindII	GTYRAC	1 cut(s)	400
HpaI	GTTAAC	1 cut(s)	400
HphI	GGTGA	3 cut(s)	280, 512, 644
Hpy166II	GTNNAC	2 cut(s)	400, 619
Hpy188I	TCNGA	2 cut(s)	105, 661
Hpy188III	TCNNGA	2 cut(s)	77, 281
Hpy8I	GTNNAC	2 cut(s)	400, 619
HpyAV	CCTTC	5 cut(s)	129, 163, 629, 641, 710
HpyCH4III	ACNGT	3 cut(s)	436, 441, 487
HpyCH4IV	ACGT	2 cut(s)	205, 396
HpyCH4V	TGCA	6 cut(s)	251, 296, 413, 517, 531, 683
HpyF10VI	GCNNNNNNNGC	5 cut(s)	254, 410, 450, 459, 537
HpyF3I	CTNAG	4 cut(s)	244, 282, 558, 658
HpySE526I	ACGT	2 cut(s)	205, 396
Ksp22I	TGATCA	1 cut(s)	534
KspAI	GTTAAC	1 cut(s)	400
Kzo9I	GATC	9 cut(s)	9, 170, 270, 285, 331, 502, 534, 589, 673
LmnI	GCTCC	2 cut(s)	64, 238
Lsp1109I	GCAGC	5 cut(s)	235, 347, 391, 529, 667
LweI	GCATC	2 cut(s)	96, 130
MaeI	CTAG	1 cut(s)	111
MaeII	ACGT	2 cut(s)	205, 396
MaeIII	GTNAC	1 cut(s)	113
MalI	GATC	9 cut(s)	11, 172, 272, 287, 333, 504, 536, 591, 675
MboI	GATC	9 cut(s)	9, 170, 270, 285, 331, 502, 534, 589, 673
MboII	GAAGA	4 cut(s)	148, 656, 683, 743
MflI	RGATCY	2 cut(s)	270, 673
MhlI	GDGCHC	3 cut(s)	69, 309, 446
MlsI	TGGCCA	1 cut(s)	509
MluCI	AATT	3 cut(s)	52, 87, 757
MluNI	TGGCCA	1 cut(s)	509
MmeI	TCCRAC	2 cut(s)	112, 506
MnlI	CCTC	8 cut(s)	235, 319, 489, 553, 600, 694, 727, 739
Mox20I	TGGCCA	1 cut(s)	509
MscI	TGGCCA	1 cut(s)	509
MseI	TTAA	3 cut(s)	365, 399, 468
MslI	CAYNNNNRTG	2 cut(s)	551, 624
Msp20I	TGGCCA	1 cut(s)	509
MspA1I	CMGCKG	1 cut(s)	248
MspR9I	CCNGG	2 cut(s)	337, 495
Mva1269I	GAATGC	1 cut(s)	18
MvaI	CCWGG	2 cut(s)	337, 495
MwoI	GCNNNNNNNGC	5 cut(s)	254, 410, 450, 459, 537
NdeI	CATATG	1 cut(s)	229
NdeII	GATC	9 cut(s)	9, 170, 270, 285, 331, 502, 534, 589, 673
NmuCI	GTSAC	1 cut(s)	113
OliI	CACNNNNGTG	1 cut(s)	551
PctI	GAATGC	1 cut(s)	18
PkrI	GCNGC	5 cut(s)	250, 362, 406, 519, 682
Ppu21I	YACGTR	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	335, 493
PspFI	CCCAGC	1 cut(s)	60
PspGI	CCWGG	2 cut(s)	335, 493
PstNI	CAGNNNCTG	1 cut(s)	557
PsuI	RGATCY	2 cut(s)	270, 673
PvuII	CAGCTG	1 cut(s)	248
RsaI	GTAC	5 cut(s)	350, 371, 438, 492, 599
RsaNI	GTAC	5 cut(s)	349, 370, 437, 491, 598
RseI	CAYNNNNRTG	2 cut(s)	551, 624
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	3 cut(s)	365, 399, 468
SatI	GCNGC	5 cut(s)	249, 361, 405, 518, 681
Sau3AI	GATC	9 cut(s)	9, 170, 270, 285, 331, 502, 534, 589, 673
ScrFI	CCNGG	2 cut(s)	337, 495
SduI	GDGCHC	3 cut(s)	69, 309, 446
SfaNI	GCATC	2 cut(s)	96, 130
SmiMI	CAYNNNNRTG	2 cut(s)	551, 624
SmlI	CTYRAG	3 cut(s)	77, 310, 686
SmoI	CTYRAG	3 cut(s)	77, 310, 686
Sse9I	AATT	3 cut(s)	52, 87, 757
SsiI	CCGC	1 cut(s)	462
SspMI	CTAG	1 cut(s)	111
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	335, 493
StyI	CCWWGG	2 cut(s)	390, 510
TaaI	ACNGT	3 cut(s)	436, 441, 487
TaiI	ACGT	2 cut(s)	208, 399
TasI	AATT	3 cut(s)	52, 87, 757
TatI	WGTACW	4 cut(s)	348, 369, 436, 597
Tru1I	TTAA	3 cut(s)	365, 399, 468
Tru9I	TTAA	3 cut(s)	365, 399, 468
TscAI	CASTG	4 cut(s)	166, 446, 558, 626
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	5 cut(s)	248, 360, 404, 517, 680
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	5 cut(s)	11, 45, 205, 489, 744
TspRI	CASTG	4 cut(s)	166, 446, 558, 626
XapI	RAATTY	2 cut(s)	52, 87
XcmI	CCANNNNNNNNNTGG	1 cut(s)	626
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.