pycom03g02110

Zinc transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0008630
Physical Location & Seq
Forward (+)
1594593 .. 1601116
6524 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1122 bp
ATGAGTGCAAATAGTAACATTCTGACAAAAAAGAACAATGCATGTTCAAATCCGTCTCATTTGTCTCAGTGTATAAACTACCAAAGTAGAGAAAGAAACTCAATTGTTCTGTTCTATTCTCTCCTCTCTACGAAACGTCTCTTTCCTCCACTACACAAAATTGAAAATTCCCTCTCCCCTCCTCTCTCTCTCCTCTCTCTATATAAACCATTTCAGCTCCAGTGTTTTTCATTTTACGCTCAATTCAGTCATAATTCCGTCAAACTCTTTTCAACCCAAAATTCTTGGAGCTTTTTTGGTCAAAGCTCCTCCATGGGATATCAGGTTTTGGTGGCTCTCGCGCTGTCACTCGTGGGTGGACTCAGTACTTCATTCGGTGCACTTTTAGTAATTGTCAATGAGACTCCGAATTTGAAGATGCTCGGGCTTTTACAGGGTTTTGCTGCAGGTCTGATGCTAAGCATATCACTCCTAGATTTGGCTCACAATGCTATCAACTCAATTGGTTTTTTAAAAGGCAATCTATGGTTTTTTGGAGGTGTCATATTCTTTGCTATCATTGCCAATTTTATTCCAGAACCAACTCTTGCTCCTGTTTCGAAGAAAGATGAAGGAGGCAAGGACACTTTGAAAAAGCATCGCCGACAAGTTTTATTCAGTGGGATAGTAACAGCAATAGGCATAAGTTTACACAACCTTCCAGAAGGAATGGCCGTGTTTCTTGGATCAATGAAGGGCCTTCGTGTTGGTGTGAACTTGGCCTTGGCCATTGCCTTACACAACATCCCAGAGGGTGTTGCTGTTGCGCTTCCTGTTTATTTTGCAACACAGAGCAAATGGCAGGCATTCAAGTTGGCAACGCTTTCCGGTTTAGCTGAGCCTTTGGGTGTCGTAATTGTAGCCTATCTATTCCCAAGCAGCTTGAGTCCTGAAATTCTTGAAGGCCTGCTCGGATCAGTTGGTGGAGTGATGGCTTTTCTAACTCTCCATGAGATGCTGCCCTTGGCTTTTGATTATGCGGGGCAGAAGCTAGCCGTCAAGGCCGTGTTTTTGGGAATGGCCTTCATGTCTGCAAGCCTTTACTTTCTTGAAATCAGCCTACCACAGGAGATGAGCTTTTAG

Protein Analysis

374

Amino Acids

40.35

Weight (kDa)

9.25

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 207 - 358 1.1e-20 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 437
AccII CGCG 1 cut(s) 341
AciI CCGC 1 cut(s) 1019
AclWI GGATC 2 cut(s) 733, 961
AcoI YGGCCR 2 cut(s) 711, 765
AcsI RAATTY 4 cut(s) 166, 280, 409, 933
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 478, 1105
AgsI TTSAA 8 cut(s) 48, 164, 273, 415, 631, 850, 941, 1091
AjuI GAANNNNNNNTTGG 2 cut(s) 746, 778
AluBI AGCT 7 cut(s) 217, 291, 306, 875, 921, 1030, 1116
AluI AGCT 7 cut(s) 217, 291, 306, 875, 921, 1030, 1116
Alw21I GWGCWC 1 cut(s) 382
Alw26I GTCTC 4 cut(s) 60, 69, 143, 395
Alw44I GTGCAC 1 cut(s) 378
AlwI GGATC 2 cut(s) 733, 961
Ama87I CYCGRG 1 cut(s) 422
AoxI GGCC 7 cut(s) 711, 736, 759, 765, 943, 1041, 1059
ApaLI GTGCAC 1 cut(s) 378
ApeKI GCWGC 3 cut(s) 443, 918, 997
ApoI RAATTY 4 cut(s) 166, 280, 409, 933
ArsI GACNNNNNNTTYG 2 cut(s) 394, 426
AspLEI GCGC 2 cut(s) 343, 808
AspS9I GGNCC 1 cut(s) 736
AsuII TTCGAA 1 cut(s) 599
AsuNHI GCTAGC 1 cut(s) 1030
AvaI CYCGRG 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 382
BalI TGGCCA 1 cut(s) 767
BauI CACGAG 1 cut(s) 350
Bbv12I GWGCWC 1 cut(s) 382
BbvI GCAGC 3 cut(s) 430, 930, 984
BccI CCATC 1 cut(s) 964
BceAI ACGGC 3 cut(s) 698, 1019, 1028
BcoDI GTCTC 4 cut(s) 60, 69, 143, 395
BfaI CTAG 2 cut(s) 473, 1031
BfmI CTRYAG 1 cut(s) 444
BfuAI ACCTGC 1 cut(s) 437
BglI GCCNNNNNGGC 1 cut(s) 1040
BisI GCNGC 3 cut(s) 444, 919, 998
BlpI GCTNAGC 2 cut(s) 458, 876
BlsI GCNGC 3 cut(s) 445, 920, 999
BmcAI AGTACT 1 cut(s) 367
BmeT110I CYCGRG 1 cut(s) 422
BmgT120I GGNCC 1 cut(s) 736
BmsI GCATC 4 cut(s) 408, 444, 646, 984
BmtI GCTAGC 1 cut(s) 1034
BpmI CTGGAG 1 cut(s) 203
Bpu1102I GCTNAGC 2 cut(s) 458, 876
Bpu14I TTCGAA 1 cut(s) 599
BpuEI CTTGAG 1 cut(s) 943
BsaJI CCNNGG 3 cut(s) 312, 762, 1002
BsaWI WCCGGW 1 cut(s) 866
BsaXI ACNNNNNCTCC 2 cut(s) 574, 604
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 1105
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 2 cut(s) 558, 768
BseDI CCNNGG 3 cut(s) 312, 762, 1002
BseGI GGATG 1 cut(s) 783
BseLI CCNNNNNNNGG 2 cut(s) 478, 1105
BseMI GCAATG 2 cut(s) 558, 768
BseMII CTCAG 3 cut(s) 80, 376, 867
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 4 cut(s) 113, 171, 182, 298
BseSI GKGCMC 1 cut(s) 382
BseXI GCAGC 3 cut(s) 430, 930, 984
Bsh1236I CGCG 1 cut(s) 341
BshFI GGCC 7 cut(s) 713, 738, 761, 767, 945, 1043, 1061
BsiHKAI GWGCWC 1 cut(s) 382
BsiHKCI CYCGRG 1 cut(s) 422
BsiSI CCGG 1 cut(s) 867
BslI CCNNNNNNNGG 2 cut(s) 478, 1105
BsmAI GTCTC 4 cut(s) 60, 69, 143, 395
BsmBI CGTCTC 2 cut(s) 60, 143
BsmI GAATGC 1 cut(s) 845
BsnI GGCC 7 cut(s) 713, 738, 761, 767, 945, 1043, 1061
BsoBI CYCGRG 1 cut(s) 422
Bsp119I TTCGAA 1 cut(s) 599
Bsp1286I GDGCHC 1 cut(s) 382
Bsp143I GATC 2 cut(s) 725, 953
Bsp1720I GCTNAGC 2 cut(s) 458, 876
Bsp19I CCATGG 1 cut(s) 312
BspACI CCGC 1 cut(s) 1019
BspANI GGCC 7 cut(s) 713, 738, 761, 767, 945, 1043, 1061
BspCNI CTCAG 3 cut(s) 79, 375, 868
BspFNI CGCG 1 cut(s) 341
BspMAI CTGCAG 1 cut(s) 448
BspMI ACCTGC 1 cut(s) 437
BspOI GCTAGC 1 cut(s) 1034
BspPI GGATC 2 cut(s) 733, 961
BspT104I TTCGAA 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 558, 768
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 3 cut(s) 312, 762, 1002
BssMI GATC 2 cut(s) 725, 953
BssSI CACGAG 1 cut(s) 350
BssT1I CCWWGG 3 cut(s) 312, 762, 1002
Bst2BI CACGAG 1 cut(s) 350
BstBI TTCGAA 1 cut(s) 599
BstC8I GCNNGC 4 cut(s) 843, 947, 1032, 1075
BstDEI CTNAG 4 cut(s) 66, 362, 458, 876
BstDSI CCRYGG 1 cut(s) 312
BstENI CCTNNNNNAGG 1 cut(s) 1103
BstF5I GGATG 1 cut(s) 783
BstFNI CGCG 1 cut(s) 341
BstHHI GCGC 2 cut(s) 343, 808
BstKTI GATC 2 cut(s) 728, 956
BstMAI GTCTC 4 cut(s) 60, 69, 143, 395
BstMBI GATC 2 cut(s) 725, 953
BstMWI GCNNNNNNNGC 3 cut(s) 488, 560, 1040
BstNSI RCATGY 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 382
BstUI CGCG 1 cut(s) 341
BstV1I GCAGC 3 cut(s) 430, 930, 984
BsuRI GGCC 7 cut(s) 713, 738, 761, 767, 945, 1043, 1061
BtgI CCRYGG 1 cut(s) 312
BtgZI GCGATG 1 cut(s) 623
BtsCI GGATG 1 cut(s) 783
BtsIMutI CAGTG 3 cut(s) 74, 227, 664
BveI ACCTGC 1 cut(s) 437
Cac8I GCNNGC 4 cut(s) 843, 947, 1032, 1075
CfoI GCGC 2 cut(s) 343, 808
Cfr13I GGNCC 1 cut(s) 736
Csp6I GTAC 1 cut(s) 366
CviAII CATG 4 cut(s) 42, 313, 989, 1066
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 4 cut(s) 66, 362, 458, 876
DpnI GATC 2 cut(s) 727, 955
DpnII GATC 2 cut(s) 725, 953
DraI TTTAAA 1 cut(s) 513
EaeI YGGCCR 2 cut(s) 711, 765
Eco130I CCWWGG 3 cut(s) 312, 762, 1002
Eco147I AGGCCT 1 cut(s) 945
Eco32I GATATC 1 cut(s) 320
Eco88I CYCGRG 1 cut(s) 422
EcoNI CCTNNNNNAGG 1 cut(s) 1103
EcoO109I RGGNCCY 1 cut(s) 736
EcoRV GATATC 1 cut(s) 320
EcoT14I CCWWGG 3 cut(s) 312, 762, 1002
EcoT22I ATGCAT 1 cut(s) 43
ErhI CCWWGG 3 cut(s) 312, 762, 1002
Esp3I CGTCTC 2 cut(s) 60, 143
FaeI CATG 4 cut(s) 45, 316, 992, 1069
FatI CATG 4 cut(s) 41, 312, 988, 1065
FauI CCCGC 1 cut(s) 1012
Fnu4HI GCNGC 3 cut(s) 444, 919, 998
FokI GGATG 1 cut(s) 770
Fsp4HI GCNGC 3 cut(s) 444, 919, 998
FspBI CTAG 2 cut(s) 473, 1031
GlaI GCGC 2 cut(s) 342, 807
GluI GCNGC 3 cut(s) 444, 919, 998
GsuI CTGGAG 1 cut(s) 203
HaeIII GGCC 7 cut(s) 713, 738, 761, 767, 945, 1043, 1061
HapII CCGG 1 cut(s) 867
HhaI GCGC 2 cut(s) 343, 808
Hin1II CATG 4 cut(s) 45, 316, 992, 1069
Hin6I GCGC 2 cut(s) 341, 806
HinP1I GCGC 2 cut(s) 341, 806
HinfI GANTC 3 cut(s) 360, 403, 925
HpaII CCGG 1 cut(s) 867
Hpy166II GTNNAC 4 cut(s) 359, 380, 689, 754
Hpy188I TCNGA 4 cut(s) 24, 408, 453, 953
Hpy188III TCNNGA 5 cut(s) 575, 701, 929, 938, 1088
Hpy8I GTNNAC 4 cut(s) 359, 380, 689, 754
HpyAV CCTTC 7 cut(s) 605, 698, 707, 727, 749, 935, 1072
HpyCH4IV ACGT 1 cut(s) 136
HpyCH4V TGCA 6 cut(s) 8, 41, 380, 446, 824, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 488, 560, 1040
HpyF3I CTNAG 4 cut(s) 66, 362, 458, 876
HpySE526I ACGT 1 cut(s) 136
Hsp92II CATG 4 cut(s) 45, 316, 992, 1069
HspAI GCGC 2 cut(s) 341, 806
Kzo9I GATC 2 cut(s) 725, 953
LmnI GCTCC 4 cut(s) 222, 288, 311, 595
Lsp1109I GCAGC 3 cut(s) 430, 930, 984
LweI GCATC 4 cut(s) 408, 444, 646, 984
MaeI CTAG 2 cut(s) 473, 1031
MaeII ACGT 1 cut(s) 136
MaeIII GTNAC 3 cut(s) 14, 345, 667
MalI GATC 2 cut(s) 727, 955
MboI GATC 2 cut(s) 725, 953
MboII GAAGA 2 cut(s) 427, 613
MfeI CAATTG 2 cut(s) 102, 501
MhlI GDGCHC 1 cut(s) 382
MlsI TGGCCA 1 cut(s) 767
MluNI TGGCCA 1 cut(s) 767
MlyI GAGTC 3 cut(s) 354, 397, 934
Mox20I TGGCCA 1 cut(s) 767
Mph1103I ATGCAT 1 cut(s) 43
MscI TGGCCA 1 cut(s) 767
MseI TTAA 1 cut(s) 512
Msp20I TGGCCA 1 cut(s) 767
MspI CCGG 1 cut(s) 867
MunI CAATTG 2 cut(s) 102, 501
Mva1269I GAATGC 1 cut(s) 845
MvnI CGCG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 488, 560, 1040
NcoI CCATGG 1 cut(s) 312
NdeII GATC 2 cut(s) 725, 953
NheI GCTAGC 1 cut(s) 1030
NlaIII CATG 4 cut(s) 45, 316, 992, 1069
NmuCI GTSAC 1 cut(s) 345
NsiI ATGCAT 1 cut(s) 43
NspI RCATGY 1 cut(s) 45
NspV TTCGAA 1 cut(s) 599
PceI AGGCCT 1 cut(s) 945
PctI GAATGC 1 cut(s) 845
PkrI GCNGC 3 cut(s) 445, 920, 999
PleI GAGTC 3 cut(s) 354, 397, 933
PpsI GAGTC 3 cut(s) 354, 397, 933
PspPI GGNCC 1 cut(s) 736
PstI CTGCAG 1 cut(s) 448
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SaqAI TTAA 1 cut(s) 512
SatI GCNGC 3 cut(s) 444, 919, 998
Sau3AI GATC 2 cut(s) 725, 953
Sau96I GGNCC 1 cut(s) 736
ScaI AGTACT 1 cut(s) 367
SchI GAGTC 3 cut(s) 354, 397, 934
SduI GDGCHC 1 cut(s) 382
SfaNI GCATC 4 cut(s) 408, 444, 646, 984
SfcI CTRYAG 1 cut(s) 444
SfuI TTCGAA 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
SseBI AGGCCT 1 cut(s) 945
SsiI CCGC 1 cut(s) 1019
SspMI CTAG 2 cut(s) 473, 1031
StuI AGGCCT 1 cut(s) 945
StyI CCWWGG 3 cut(s) 312, 762, 1002
TaiI ACGT 1 cut(s) 139
TaqI TCGA 1 cut(s) 599
TatI WGTACW 1 cut(s) 365
Tru1I TTAA 1 cut(s) 512
Tru9I TTAA 1 cut(s) 512
TscAI CASTG 3 cut(s) 74, 227, 664
TseFI GTSAC 1 cut(s) 345
TseI GCWGC 3 cut(s) 443, 918, 997
Tsp45I GTSAC 1 cut(s) 345
TspDTI ATGAA 5 cut(s) 219, 360, 624, 746, 1054
TspGWI ACGGA 2 cut(s) 42, 247
TspRI CASTG 3 cut(s) 74, 227, 664
VneI GTGCAC 1 cut(s) 378
XagI CCTNNNNNAGG 1 cut(s) 1103
XapI RAATTY 4 cut(s) 166, 280, 409, 933
XceI RCATGY 1 cut(s) 45
XspI CTAG 2 cut(s) 473, 1031
ZrmI AGTACT 1 cut(s) 367
Zsp2I ATGCAT 1 cut(s) 43
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.