Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0010844

Physical Location & Seq

Genomic Coordinates Forward (+)

2195720 .. 2197646

Gene Structure 1927 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGTTGCAGTGCATAGACGGGTTAAGGCATGTATGTGCTTCCCTGCTGAGGTGCTGTGATCTTGACTTGTACAAACAATCGAGAGGCTTAGAAGACCCTGAAATTCTAGCAAGGGAGACCGTGTTCAGTGTGAGTGAAATAGAGGCACTCTATGAGCTATTTAAGAAGATCAGCAGTGCAGTGATTGATGACGGGTTGATTAACAAGGAGGAATTTCAACTGGCATTATTCAAGACAAACAAGAAAGAGAGCTTGTTTGCTGATCGTGTTTTTGACTTGTTTGACACAAAGCACAATGGAATACTAGGTTTTGAAGAGTTTGCTCGAGCTCTCTCTGTCTTTCATCCCAATGCCCCAATTGACGATAAGATTGGGTTTTCTTTTCAGTTATATGACCTTAAACAGCAAGGCTTCATCGAAAGGCAGGAGGTGAAACAAATGGTTGTGGCTACCCTCTCAGAATCAGGCATGAATCTTTCAGATGATGTGATTGAGAGCATAATTGATAAGACCTTTGAGGAAGCTGATACAAAACATGATGGGAGGATCGACAAGGAAGAGTGGAGAAGCCTTGTTTTGCGGCATCCATCCCTTCTTAAAAATATGACGCTCCAATACCTCAAGGACATCACCACAACATTCCCGAGCTTTGTATTTCACTCTCAAGTGGACGACACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005513 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0008150 GO:0009593 GO:0009705 GO:0010035 GO:0010038 GO:0016020 GO:0031090 GO:0042221 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050801 GO:0050896 GO:0051592 GO:0051606 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0065007 GO:0065008 GO:0071944 GO:0098588 GO:0098771 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7 EF-hand_8

Protein Analysis

227

Amino Acids

25.98

Weight (kDa)

4.84

Isoelectric Point (pI)

48.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_5	PF13202	168 - 192	7e-08	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010844)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26570 AT4G26570 AT5G55990 AT5G55990
fragaria_vesca	FvH4_3g42250 FvH4_3g42250 FvH4_3g42250 FvH4_3g42250
malus_domestica	MD03G1036500.v1.1
pyrus_communis	pycom03g02790
rosa_chinensis	RchiOBHm_Chr5g0075551
rosa_laevigata	RLG00000036575
rosa_multiflora	Rmu_co8417431.1_g000001 Rmu_sc0003437.1_g000004 Rmu_sc0024773.1_g000001
rosa_rugosa	Rorug05G0440300 Rorug05G0440400 Rorug05G0440500.1
rosa_samantha	Rh5AG497700
rosa_wichuraiana	Rw5G046130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	580
AclWI	GGATC	1 cut(s)	554
AcsI	RAATTY	2 cut(s)	102, 212
AfaI	GTAC	1 cut(s)	71
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	3 cut(s)	218, 232, 314
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	5 cut(s)	157, 252, 329, 524, 648
AluI	AGCT	5 cut(s)	157, 252, 329, 524, 648
Alw21I	GWGCWC	1 cut(s)	331
Alw26I	GTCTC	1 cut(s)	110
AlwI	GGATC	1 cut(s)	554
Ama87I	CYCGRG	2 cut(s)	324, 643
ApoI	RAATTY	2 cut(s)	102, 212
AsuHPI	GGTGA	2 cut(s)	442, 622
AvaI	CYCGRG	2 cut(s)	324, 643
BanII	GRGCYC	1 cut(s)	331
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	47
BccI	CCATC	2 cut(s)	533, 595
BcoDI	GTCTC	1 cut(s)	110
BfaI	CTAG	2 cut(s)	107, 305
BisI	GCNGC	1 cut(s)	581
BlsI	GCNGC	1 cut(s)	582
BmeT110I	CYCGRG	2 cut(s)	324, 643
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	99
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	2 cut(s)	605, 648
BsaI	GGTCTC	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	225
BseGI	GGATG	3 cut(s)	343, 583, 587
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	2 cut(s)	38, 471
BseNI	ACTGG	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	331
BsiHKCI	CYCGRG	2 cut(s)	324, 643
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	110
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	2 cut(s)	324, 643
Bsp1286I	GDGCHC	1 cut(s)	331
Bsp1407I	TGTACA	1 cut(s)	69
Bsp143I	GATC	4 cut(s)	58, 168, 262, 546
BspACI	CCGC	1 cut(s)	580
BspCNI	CTCAG	2 cut(s)	39, 470
BspPI	GGATC	1 cut(s)	554
BspTNI	GGTCTC	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	69
BsrI	ACTGG	1 cut(s)	225
BssMI	GATC	4 cut(s)	58, 168, 262, 546
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	2 cut(s)	309, 552
BstAUI	TGTACA	1 cut(s)	69
BstDEI	CTNAG	3 cut(s)	47, 88, 457
BstF5I	GGATG	3 cut(s)	343, 583, 587
BstKTI	GATC	4 cut(s)	61, 171, 265, 549
BstMAI	GTCTC	1 cut(s)	110
BstMBI	GATC	4 cut(s)	58, 168, 262, 546
BstNSI	RCATGY	1 cut(s)	32
BstV2I	GAAGAC	1 cut(s)	99
BtsCI	GGATG	3 cut(s)	343, 583, 587
BtsI	GCAGTG	3 cut(s)	14, 181, 186
BtsIMutI	CAGTG	4 cut(s)	14, 133, 181, 186
CseI	GACGC	1 cut(s)	616
Csp6I	GTAC	1 cut(s)	70
CviAII	CATG	3 cut(s)	29, 469, 536
CviJI	RGCY	9 cut(s)	87, 157, 252, 329, 411, 449, 524, 570, 648
CviKI_1	RGCY	9 cut(s)	87, 157, 252, 329, 411, 449, 524, 570, 648
CviQI	GTAC	1 cut(s)	70
DdeI	CTNAG	3 cut(s)	47, 88, 457
DpnI	GATC	4 cut(s)	60, 170, 264, 548
DpnII	GATC	4 cut(s)	58, 168, 262, 546
Eam1104I	CTCTTC	2 cut(s)	309, 552
EarI	CTCTTC	2 cut(s)	309, 552
Ecl136II	GAGCTC	1 cut(s)	329
Eco24I	GRGCYC	1 cut(s)	331
Eco31I	GGTCTC	1 cut(s)	110
Eco53kI	GAGCTC	1 cut(s)	329
Eco88I	CYCGRG	2 cut(s)	324, 643
EcoICRI	GAGCTC	1 cut(s)	329
EcoT38I	GRGCYC	1 cut(s)	331
FaeI	CATG	3 cut(s)	32, 472, 539
FatI	CATG	3 cut(s)	28, 468, 535
Fnu4HI	GCNGC	1 cut(s)	581
FokI	GGATG	3 cut(s)	330, 570, 574
FriOI	GRGCYC	1 cut(s)	331
Fsp4HI	GCNGC	1 cut(s)	581
FspBI	CTAG	2 cut(s)	107, 305
GluI	GCNGC	1 cut(s)	581
HgaI	GACGC	1 cut(s)	616
Hin1II	CATG	3 cut(s)	32, 472, 539
HinfI	GANTC	2 cut(s)	461, 472
HphI	GGTGA	2 cut(s)	442, 622
Hpy166II	GTNNAC	1 cut(s)	670
Hpy188I	TCNGA	2 cut(s)	460, 481
Hpy188III	TCNNGA	4 cut(s)	62, 81, 232, 643
Hpy8I	GTNNAC	1 cut(s)	670
HpyAV	CCTTC	1 cut(s)	602
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	3 cut(s)	7, 12, 179
HpyF3I	CTNAG	3 cut(s)	47, 88, 457
Hsp92II	CATG	3 cut(s)	32, 472, 539
Kzo9I	GATC	4 cut(s)	58, 168, 262, 546
LmnI	GCTCC	1 cut(s)	615
LpnPI	CCDG	5 cut(s)	56, 111, 206, 410, 450
LweI	GCATC	1 cut(s)	592
MaeI	CTAG	2 cut(s)	107, 305
MalI	GATC	4 cut(s)	60, 170, 264, 548
MboI	GATC	4 cut(s)	58, 168, 262, 546
MboII	GAAGA	4 cut(s)	104, 178, 326, 569
MfeI	CAATTG	1 cut(s)	357
MhlI	GDGCHC	1 cut(s)	331
MluCI	AATT	4 cut(s)	102, 212, 357, 501
MnlI	CCTC	9 cut(s)	42, 77, 136, 202, 421, 464, 511, 537, 629
MseI	TTAA	5 cut(s)	23, 162, 201, 399, 597
MslI	CAYNNNNRTG	2 cut(s)	33, 348
MunI	CAATTG	1 cut(s)	357
NdeII	GATC	4 cut(s)	58, 168, 262, 546
NlaIII	CATG	3 cut(s)	32, 472, 539
NspI	RCATGY	1 cut(s)	32
PaeR7I	CTCGAG	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	461, 472
PkrI	GCNGC	1 cut(s)	582
Psp124BI	GAGCTC	1 cut(s)	331
PspXI	VCTCGAGB	1 cut(s)	324
RsaI	GTAC	1 cut(s)	71
RsaNI	GTAC	1 cut(s)	70
RseI	CAYNNNNRTG	2 cut(s)	33, 348
SacI	GAGCTC	1 cut(s)	331
SaqAI	TTAA	5 cut(s)	23, 162, 201, 399, 597
SatI	GCNGC	1 cut(s)	581
Sau3AI	GATC	4 cut(s)	58, 168, 262, 546
SduI	GDGCHC	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	592
Sfr274I	CTCGAG	1 cut(s)	324
SlaI	CTCGAG	1 cut(s)	324
SmiMI	CAYNNNNRTG	2 cut(s)	33, 348
SmlI	CTYRAG	3 cut(s)	324, 620, 663
SmoI	CTYRAG	3 cut(s)	324, 620, 663
Sse9I	AATT	4 cut(s)	102, 212, 357, 501
SsiI	CCGC	1 cut(s)	580
SspMI	CTAG	2 cut(s)	107, 305
SstI	GAGCTC	1 cut(s)	331
TaaI	ACNGT	1 cut(s)	121
TaqI	TCGA	4 cut(s)	80, 325, 417, 549
TasI	AATT	4 cut(s)	102, 212, 357, 501
TatI	WGTACW	1 cut(s)	69
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	2 cut(s)	461, 472
Tru1I	TTAA	5 cut(s)	23, 162, 201, 399, 597
Tru9I	TTAA	5 cut(s)	23, 162, 201, 399, 597
TscAI	CASTG	4 cut(s)	14, 133, 181, 186
TspDTI	ATGAA	3 cut(s)	332, 403, 485
TspRI	CASTG	4 cut(s)	14, 133, 181, 186
XapI	RAATTY	2 cut(s)	102, 212
XceI	RCATGY	1 cut(s)	32
XhoI	CTCGAG	1 cut(s)	324
XspI	CTAG	2 cut(s)	107, 305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.