Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0009499

Physical Location & Seq

Genomic Coordinates Reverse (-)

3620901 .. 3624378

Gene Structure 3478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGGCGGTGGTCGCCGAGAGCTCTTCGGCTTCGCCCAACCCGTCGGAGGACAAGCCGGTGATTGTTAGGGTTAAACGCAAGGCATTGCAGTCCCCACTCGACGCTTTCTGGCTGGAAATCAATGAGAGGCCTGCGAAGCGTCCGTTGTTGGATTTTGAGAAGCTGTCAATGTCGGATTCAGCTGGAAAGGGTAATGAGCCGTTGGTGGATTCAGCTGGAATGGCAGAAGAACTGAAAACCAAGAAGGTTTTGGTACAGCATGTAGAGACAGTCAGCAGCTTCGGCACCAGTGTTGACGTTGTGAAATCATTTCTGGACTCTAATTCTGGTGATGTGTGTGATCGTAAAACAAAGATTGGAGAACGCAAATATGCCCTGAGAAAGGAGAATCAGAAACAAGATCTGATTTTGTCTAAAGCCAGACAGAGGAAGGAGGTTGTGGCAAAAAATGCGCGTTTTGAACAAATATGGAGGAGCAGAAGAGGAAACAAAGAAACATCACATGAGAATTTACATGAAATTTGTCATGTCTATGATGTTCTACGTGTTGACGTTGCTGAAAACCCCAAGGATGAAATATCTTTGGAGGACCAGAAGATTTTGAACAGTTACTTGCCTCTGCTGAGAGAGTTCATCCCATCTGCTGCTTCCGAGATCGAATCAGAGTTATACGCTAACAGTTCCAAACAAGATTCTGAAGATGAGTATGTTTATGACTTGTATGCTGTGAAGGAGGAAAGTGATATGGCTGTTGAATTATCTTCAAACCCATTCCCCTTGGTCCAAGTTGATGATGAGGATTTCTATGATGGGCCTGATGAATCCGAATATGAATCTGATGATTCGAATGCTGAAAACAACCCGCTCAATGATTATCCGGATGAGATCTCTGAAGAGGAAGAAGAGGAATCAGAGAACGAAGACTCCAATGATGAATCAGAAGAGAAGGAGAGTTCCAGCGCCAAATCATCAGAACCCGAGGATTTAGAAGAAAATGACTTTTTTGAAGATGATATATATGATGAAAACAATGACGGCGATGACTTTGATTACGATGTTGATCCAAGTGATGATGGTGAAGACCGGAATATGGTCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006139 GO:0006259 GO:0006304 GO:0006305 GO:0006306 GO:0006325 GO:0006342 GO:0006355 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032259 GO:0032501 GO:0032502 GO:0034641 GO:0040029 GO:0043170 GO:0043412 GO:0043414 GO:0044237 GO:0044238 GO:0044260 GO:0044728 GO:0045814 GO:0045892 GO:0045934 GO:0046483 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0140110 GO:1901360 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Iwr1

Protein Analysis

367

Amino Acids

41.59

Weight (kDa)

4.22

Isoelectric Point (pI)

67.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Iwr1	PF08574	234 - 295	9.7e-06	Transcription factor Iwr1

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009499)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30280
fragaria_vesca	FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270 FvH4_5g27270
malus_domestica	MD03G1058300.v1.1 MD11G1060500.v1.1
prunus_persica	Prupe.6G045300_v2.0.a1 Prupe.6G045300_v2.0.a1
pyrus_communis	pycom03g04670 pycom11g05000
rosa_chinensis	RchiOBHm_Chr6g0268191
rosa_laevigata	RLG00000013926
rosa_roxburghii	Rroxscaffold_7G00199970
rosa_rugosa	Rorug06G0039500 Rorug06G0039600
rosa_samantha	Rh6AG159500 Rh6BG163600 Rh6CG154500 Rh6DG149500
rosa_wichuraiana	Rw6G013810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AccBSI	CCGCTC	1 cut(s)	865
AccII	CGCG	1 cut(s)	454
AccIII	TCCGGA	1 cut(s)	877
AciI	CCGC	2 cut(s)	5, 863
AclWI	GGATC	1 cut(s)	1055
AcsI	RAATTY	2 cut(s)	508, 519
AcuI	CTGAAG	2 cut(s)	717, 912
AfaI	GTAC	1 cut(s)	255
AfiI	CCNNNNNNNGG	4 cut(s)	46, 382, 426, 1090
AflIII	ACRYGT	1 cut(s)	544
AgsI	TTSAA	5 cut(s)	461, 604, 755, 765, 1007
AloI	GAACNNNNNNTCC	2 cut(s)	908, 940
AluBI	AGCT	5 cut(s)	21, 163, 182, 215, 279
AluI	AGCT	5 cut(s)	21, 163, 182, 215, 279
Alw21I	GWGCWC	1 cut(s)	23
Alw26I	GTCTC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	1055
Ama87I	CYCGRG	1 cut(s)	977
Aor13HI	TCCGGA	1 cut(s)	877
AoxI	GGCC	2 cut(s)	128, 812
ApeKI	GCWGC	2 cut(s)	276, 644
ApoI	RAATTY	2 cut(s)	508, 519
AspLEI	GCGC	2 cut(s)	454, 962
AspS9I	GGNCC	3 cut(s)	589, 781, 812
AsuHPI	GGTGA	3 cut(s)	70, 341, 1088
AsuII	TTCGAA	1 cut(s)	845
AvaI	CYCGRG	1 cut(s)	977
AvaII	GGWCC	2 cut(s)	589, 781
BanI	GGYRCC	1 cut(s)	284
BanII	GRGCYC	1 cut(s)	23
BbsI	GAAGAC	2 cut(s)	927, 1086
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	288, 631
BccI	CCATC	3 cut(s)	646, 803, 1067
BceAI	ACGGC	2 cut(s)	184, 1051
BcoDI	GTCTC	1 cut(s)	260
BfoI	RGCGCY	1 cut(s)	963
BglII	AGATCT	2 cut(s)	400, 885
BisI	GCNGC	2 cut(s)	277, 645
BlsI	GCNGC	2 cut(s)	278, 646
Bme18I	GGWCC	2 cut(s)	589, 781
BmeT110I	CYCGRG	1 cut(s)	977
BmgT120I	GGNCC	3 cut(s)	589, 781, 812
BmiI	GGNNCC	1 cut(s)	286
BpiI	GAAGAC	2 cut(s)	927, 1086
Bpu14I	TTCGAA	1 cut(s)	845
BsaAI	YACGTR	1 cut(s)	545
BsaBI	GATNNNNATC	1 cut(s)	1059
BsaJI	CCNNGG	3 cut(s)	567, 777, 978
BsaWI	WCCGGW	2 cut(s)	877, 1083
BsaXI	ACNNNNNCTCC	2 cut(s)	908, 938
Bsc4I	CCNNNNNNNGG	4 cut(s)	46, 382, 426, 1090
Bse118I	RCCGGY	1 cut(s)	55
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	83
Bse8I	GATNNNNATC	1 cut(s)	1059
BseAI	TCCGGA	1 cut(s)	877
BseDI	CCNNGG	3 cut(s)	567, 777, 978
BseGI	GGATG	3 cut(s)	577, 633, 886
BseJI	GATNNNNATC	1 cut(s)	1059
BseLI	CCNNNNNNNGG	4 cut(s)	46, 382, 426, 1090
BseMI	GCAATG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	368, 614
BseNI	ACTGG	1 cut(s)	288
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	2 cut(s)	288, 631
Bsh1236I	CGCG	1 cut(s)	454
BshFI	GGCC	2 cut(s)	130, 814
BshNI	GGYRCC	1 cut(s)	284
BsiHKAI	GWGCWC	1 cut(s)	23
BsiHKCI	CYCGRG	1 cut(s)	977
BsiSI	CCGG	3 cut(s)	56, 878, 1084
BslFI	GGGAC	1 cut(s)	76
BslI	CCNNNNNNNGG	4 cut(s)	46, 382, 426, 1090
BsmAI	GTCTC	1 cut(s)	260
BsmFI	GGGAC	1 cut(s)	76
BsmI	GAATGC	1 cut(s)	853
BsnI	GGCC	2 cut(s)	130, 814
BsoBI	CYCGRG	1 cut(s)	977
Bsp119I	TTCGAA	1 cut(s)	845
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp13I	TCCGGA	1 cut(s)	877
Bsp143I	GATC	5 cut(s)	340, 400, 654, 885, 1060
BspACI	CCGC	2 cut(s)	5, 863
BspANI	GGCC	2 cut(s)	130, 814
BspCNI	CTCAG	2 cut(s)	369, 615
BspEI	TCCGGA	1 cut(s)	877
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	1055
BspQI	GCTCTTC	1 cut(s)	28
BspT104I	TTCGAA	1 cut(s)	845
BspT107I	GGYRCC	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	865
BsrDI	GCAATG	1 cut(s)	83
BsrFI	RCCGGY	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	55
BssECI	CCNNGG	3 cut(s)	567, 777, 978
BssMI	GATC	5 cut(s)	340, 400, 654, 885, 1060
BssT1I	CCWWGG	2 cut(s)	567, 777
Bst4CI	ACNGT	3 cut(s)	271, 608, 680
Bst6I	CTCTTC	5 cut(s)	28, 475, 888, 897, 936
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	545
BstBI	TTCGAA	1 cut(s)	845
BstC8I	GCNNGC	1 cut(s)	132
BstDEI	CTNAG	2 cut(s)	377, 623
BstENI	CCTNNNNNAGG	1 cut(s)	380
BstF5I	GGATG	3 cut(s)	577, 633, 886
BstFNI	CGCG	1 cut(s)	454
BstH2I	RGCGCY	1 cut(s)	963
BstHHI	GCGC	2 cut(s)	454, 962
BstKTI	GATC	5 cut(s)	343, 403, 657, 888, 1063
BstMAI	GTCTC	1 cut(s)	260
BstMBI	GATC	5 cut(s)	340, 400, 654, 885, 1060
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 136, 221, 282, 449
BstNSI	RCATGY	1 cut(s)	263
BstUI	CGCG	1 cut(s)	454
BstV1I	GCAGC	2 cut(s)	288, 631
BstV2I	GAAGAC	2 cut(s)	927, 1086
BstX2I	RGATCY	2 cut(s)	400, 885
BstYI	RGATCY	2 cut(s)	400, 885
BsuRI	GGCC	2 cut(s)	130, 814
BtgZI	GCGATG	1 cut(s)	1053
BtsCI	GGATG	3 cut(s)	577, 633, 886
BtsIMutI	CAGTG	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	132
CfoI	GCGC	2 cut(s)	454, 962
Cfr10I	RCCGGY	1 cut(s)	55
Cfr13I	GGNCC	3 cut(s)	589, 781, 812
CseI	GACGC	2 cut(s)	110, 128
Csp6I	GTAC	1 cut(s)	254
CviAII	CATG	4 cut(s)	260, 503, 515, 527
CviQI	GTAC	1 cut(s)	254
DdeI	CTNAG	2 cut(s)	377, 623
DpnI	GATC	5 cut(s)	342, 402, 656, 887, 1062
DpnII	GATC	5 cut(s)	340, 400, 654, 885, 1060
Eam1104I	CTCTTC	5 cut(s)	28, 475, 888, 897, 936
EarI	CTCTTC	5 cut(s)	28, 475, 888, 897, 936
Ecl136II	GAGCTC	1 cut(s)	21
Eco130I	CCWWGG	2 cut(s)	567, 777
Eco147I	AGGCCT	1 cut(s)	130
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	589, 781
Eco53kI	GAGCTC	1 cut(s)	21
Eco57I	CTGAAG	2 cut(s)	717, 912
Eco88I	CYCGRG	1 cut(s)	977
EcoICRI	GAGCTC	1 cut(s)	21
EcoNI	CCTNNNNNAGG	1 cut(s)	380
EcoT14I	CCWWGG	2 cut(s)	567, 777
EcoT38I	GRGCYC	1 cut(s)	23
ErhI	CCWWGG	2 cut(s)	567, 777
FaeI	CATG	4 cut(s)	263, 506, 518, 530
FaqI	GGGAC	1 cut(s)	76
FatI	CATG	4 cut(s)	259, 502, 514, 526
FauI	CCCGC	1 cut(s)	870
Fnu4HI	GCNGC	2 cut(s)	277, 645
FokI	GGATG	3 cut(s)	584, 620, 893
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	2 cut(s)	277, 645
GlaI	GCGC	2 cut(s)	453, 961
GluI	GCNGC	2 cut(s)	277, 645
HaeII	RGCGCY	1 cut(s)	963
HaeIII	GGCC	2 cut(s)	130, 814
HapII	CCGG	3 cut(s)	56, 878, 1084
HgaI	GACGC	2 cut(s)	110, 128
HhaI	GCGC	2 cut(s)	454, 962
Hin1II	CATG	4 cut(s)	263, 506, 518, 530
Hin6I	GCGC	2 cut(s)	452, 960
HinP1I	GCGC	2 cut(s)	452, 960
HincII	GTYRAC	2 cut(s)	295, 550
HindII	GTYRAC	2 cut(s)	295, 550
HpaII	CCGG	3 cut(s)	56, 878, 1084
HphI	GGTGA	3 cut(s)	70, 341, 1088
Hpy166II	GTNNAC	2 cut(s)	295, 550
Hpy188III	TCNNGA	2 cut(s)	314, 878
Hpy8I	GTNNAC	2 cut(s)	295, 550
Hpy99I	CGWCG	2 cut(s)	46, 104
HpyAV	CCTTC	4 cut(s)	238, 424, 724, 940
HpyCH4III	ACNGT	3 cut(s)	271, 608, 680
HpyCH4IV	ACGT	3 cut(s)	297, 544, 552
HpyCH4V	TGCA	1 cut(s)	88
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 136, 221, 282, 449
HpyF3I	CTNAG	2 cut(s)	377, 623
HpySE526I	ACGT	3 cut(s)	297, 544, 552
Hsp92II	CATG	4 cut(s)	263, 506, 518, 530
HspAI	GCGC	2 cut(s)	452, 960
Kpn2I	TCCGGA	1 cut(s)	877
Kzo9I	GATC	5 cut(s)	340, 400, 654, 885, 1060
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	474
Lsp1109I	GCAGC	2 cut(s)	288, 631
MaeII	ACGT	3 cut(s)	297, 544, 552
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	5 cut(s)	342, 402, 656, 887, 1062
MbiI	CCGCTC	1 cut(s)	865
MboI	GATC	5 cut(s)	340, 400, 654, 885, 1060
MflI	RGATCY	2 cut(s)	400, 885
MhlI	GDGCHC	1 cut(s)	23
MluCI	AATT	4 cut(s)	322, 508, 519, 755
MlyI	GAGTC	2 cut(s)	311, 917
MmeI	TCCRAC	3 cut(s)	24, 129, 153
MroI	TCCGGA	1 cut(s)	877
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	531
MspA1I	CMGCKG	2 cut(s)	182, 215
MspI	CCGG	3 cut(s)	56, 878, 1084
Mva1269I	GAATGC	1 cut(s)	853
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	5 cut(s)	11, 136, 221, 282, 449
NdeII	GATC	5 cut(s)	340, 400, 654, 885, 1060
NlaIII	CATG	4 cut(s)	263, 506, 518, 530
NlaIV	GGNNCC	1 cut(s)	286
NmeAIII	GCCGAG	1 cut(s)	40
NspI	RCATGY	1 cut(s)	263
NspV	TTCGAA	1 cut(s)	845
PceI	AGGCCT	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	38
PctI	GAATGC	1 cut(s)	853
PkrI	GCNGC	2 cut(s)	278, 646
PleI	GAGTC	2 cut(s)	311, 917
PpsI	GAGTC	2 cut(s)	311, 917
Ppu21I	YACGTR	1 cut(s)	545
Psp124BI	GAGCTC	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	3 cut(s)	589, 781, 812
PsuI	RGATCY	2 cut(s)	400, 885
PvuII	CAGCTG	2 cut(s)	182, 215
RsaI	GTAC	1 cut(s)	255
RsaNI	GTAC	1 cut(s)	254
RseI	CAYNNNNRTG	1 cut(s)	531
SacI	GAGCTC	1 cut(s)	23
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	72
SatI	GCNGC	2 cut(s)	277, 645
Sau3AI	GATC	5 cut(s)	340, 400, 654, 885, 1060
Sau96I	GGNCC	3 cut(s)	589, 781, 812
SchI	GAGTC	2 cut(s)	311, 917
SduI	GDGCHC	1 cut(s)	23
SfuI	TTCGAA	1 cut(s)	845
SinI	GGWCC	2 cut(s)	589, 781
SmiMI	CAYNNNNRTG	1 cut(s)	531
Sse9I	AATT	4 cut(s)	322, 508, 519, 755
SseBI	AGGCCT	1 cut(s)	130
SsiI	CCGC	2 cut(s)	5, 863
SstI	GAGCTC	1 cut(s)	23
StuI	AGGCCT	1 cut(s)	130
StyI	CCWWGG	2 cut(s)	567, 777
TaaI	ACNGT	3 cut(s)	271, 608, 680
TaiI	ACGT	3 cut(s)	300, 547, 555
TaqI	TCGA	3 cut(s)	99, 657, 845
TasI	AATT	4 cut(s)	322, 508, 519, 755
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	1 cut(s)	295
TseI	GCWGC	2 cut(s)	276, 644
TspDTI	ATGAA	7 cut(s)	531, 588, 622, 834, 846, 948, 1038
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	2 cut(s)	589, 781
XagI	CCTNNNNNAGG	1 cut(s)	380
XapI	RAATTY	2 cut(s)	508, 519
XceI	RCATGY	1 cut(s)	263
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.