pycom03g05560

Putative lipopolysaccharide-modifying enzyme.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0012971
Physical Location & Seq
Reverse (-)
4412078 .. 4414192
2115 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g05560.5

Sequence Viewer

Length: 1005 bp
ATGTTCACCATTTGGGGTTTTCTGCAGCTCCTTGCCAGGTATCCGGGTCGGGTTCCGGATGTGGATATCATGTTTGATTGCATGGATAAGCCCATAATTAACCGGACCGAGCACGAATCGATGCCTTTGCCGCTTTTCCGGTACTGTACGGACGGTGATCACTTTGATATCCCATTTCCTGATTGGTCCTTCTGGGGTTGGCCAGAGCTCAACATTCATCCCTGGGAAGAGCAGTTCGGGGAAATCAAGCGGGGTTCTCAGGAAAGAAGTTGGAAAAAGAAGGAGCCTTTCGCATATTGGAAAGGAAACCCAGATGTTAGTTCCCCTATTCGTACGGAGTTACTTAACTGCAACGACACGAAGATGTGGAGAGCGCAGATTATGCGTCAGGATTGGGAAGCGGAAGCAAGAGCTGGTTATGAGCATTCCAAACTATCTAAGCAGTGTAATCATCAGTACAAAATCTATGCAGAAGGCTATGCTTGGTCTGTCAGCCTGAAATATATTGTATCATGTGGTTCTCTTACACTGATAATAACCCCGCAATATGAGGATTTCTTCAGCCGCGGTCTCATTCCCAAGATTAATTATTGGCCCATCTCCCCTAACGCTATATGCCCGTCTATAAAGTCTGCTGTTGACTGGGCTCAGGGACACCAATCTGAGGCTAAGGCAATGGGACAAAGAGGGCAGGATTTCATGGAAAGCCTAAGGATCGATCGGGTCTATGATTACATGTTTCACCTAATCATGGAGTACTCAAAGCTGCTGGACTTCGAGCCAGACATTCCAGCTTCTGCTATGGAAGTATGTACAGAATCCCTGCTTTGTCTTGCTGACCCGAAACAGAGAGAATGGCTTAAAAGGTCCACCGCGTACCCTTCTCCTAGCCCGCCGTGCACTCTCCCGTCGGCTGATAGTAATCTCATCAGGAGATGGAAGCGGAAAAAACAAGAAACGATGGACGCTGTGGAGGACATGAATCCCAAGGGACGGAGACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

335

Amino Acids

39.22

Weight (kDa)

6.41

Isoelectric Point (pI)

55.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07220
fragaria_vesca FvH4_3g38610
malus_domestica MD03G1069900.v1.1 MD11G1073700.v1.1 MD17G1174000.v1.1
prunus_persica Prupe.6G057000_v2.0.a1
pyrus_communis pycom03g05560
rosa_chinensis RchiOBHm_Chr5g0069671
rosa_laevigata RLG00000036083
rosa_multiflora Rmu_sc0007688.1_g000001 Rmu_sc0021095.1_g000001
rosa_roxburghii Rroxscaffold_1G00011410
rosa_rugosa Rorug05G0399200
rosa_samantha Rh5AG455900 Rh5BG474900 Rh5CG498400 Rh5DG486400
rosa_wichuraiana Rw5G042540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 567, 875
AccIII TCCGGA 1 cut(s) 55
AciI CCGC 9 cut(s) 131, 250, 401, 542, 565, 567, 873, 893, 943
AclWI GGATC 1 cut(s) 722
AcoI YGGCCR 1 cut(s) 200
AcuI CTGAAG 1 cut(s) 544
AfaI GTAC 7 cut(s) 143, 148, 334, 458, 758, 814, 878
AfiI CCNNNNNNNGG 3 cut(s) 664, 751, 993
AflIII ACRYGT 1 cut(s) 735
AjnI CCWGG 2 cut(s) 35, 221
AloI GAACNNNNNNTCC 2 cut(s) 218, 250
AluBI AGCT 5 cut(s) 28, 208, 413, 766, 794
AluI AGCT 5 cut(s) 28, 208, 413, 766, 794
Alw21I GWGCWC 3 cut(s) 114, 210, 902
Alw26I GTCTC 2 cut(s) 575, 991
Alw44I GTGCAC 1 cut(s) 898
AlwI GGATC 1 cut(s) 722
AlwNI CAGNNNCTG 1 cut(s) 797
Aor13HI TCCGGA 1 cut(s) 55
AoxI GGCC 2 cut(s) 200, 593
ApaLI GTGCAC 1 cut(s) 898
ApeKI GCWGC 2 cut(s) 25, 766
AseI ATTAAT 1 cut(s) 585
AspLEI GCGC 1 cut(s) 376
AspS9I GGNCC 4 cut(s) 105, 186, 594, 867
AsuC2I CCSGG 1 cut(s) 45
AsuHPI GGTGA 2 cut(s) 167, 734
AvaII GGWCC 3 cut(s) 105, 186, 867
AxyI CCTNAGG 1 cut(s) 710
BaeGI GKGCMC 1 cut(s) 902
BalI TGGCCA 1 cut(s) 202
BanII GRGCYC 2 cut(s) 210, 649
Bbv12I GWGCWC 3 cut(s) 114, 210, 902
BbvI GCAGC 2 cut(s) 37, 753
BccI CCATC 3 cut(s) 605, 930, 955
BceAI ACGGC 1 cut(s) 880
BcgI CGANNNNNNTGC 2 cut(s) 109, 143
BciT130I CCWGG 2 cut(s) 37, 223
BciVI GTATCC 1 cut(s) 51
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 575, 991
BfaI CTAG 1 cut(s) 888
BfmI CTRYAG 1 cut(s) 23
BfuI GTATCC 1 cut(s) 51
BisI GCNGC 4 cut(s) 26, 131, 565, 767
BlsI GCNGC 4 cut(s) 27, 132, 566, 768
BmcAI AGTACT 1 cut(s) 758
Bme1390I CCNGG 3 cut(s) 37, 45, 223
Bme18I GGWCC 3 cut(s) 105, 186, 867
BmgT120I GGNCC 4 cut(s) 105, 186, 594, 867
BmiI GGNNCC 2 cut(s) 54, 285
BmrFI CCNGG 3 cut(s) 37, 45, 223
BmrI ACTGGG 1 cut(s) 652
BmsI GCATC 1 cut(s) 111
BmuI ACTGGG 1 cut(s) 652
Bpu10I CCTNAGC 2 cut(s) 648, 669
BpuMI CCSGG 1 cut(s) 45
Bsa29I ATCGAT 2 cut(s) 119, 717
BsaBI GATNNNNATC 1 cut(s) 921
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 4 cut(s) 221, 222, 565, 987
BsaWI WCCGGW 3 cut(s) 55, 102, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 664, 751, 993
Bse1I ACTGG 1 cut(s) 647
Bse21I CCTNAGG 1 cut(s) 710
Bse3DI GCAATG 1 cut(s) 681
Bse8I GATNNNNATC 1 cut(s) 921
BseAI TCCGGA 1 cut(s) 55
BseBI CCWGG 2 cut(s) 37, 223
BseCI ATCGAT 2 cut(s) 119, 717
BseDI CCNNGG 4 cut(s) 221, 222, 565, 987
BseGI GGATG 2 cut(s) 64, 217
BseJI GATNNNNATC 1 cut(s) 921
BseLI CCNNNNNNNGG 3 cut(s) 664, 751, 993
BseMI GCAATG 1 cut(s) 681
BseMII CTCAG 3 cut(s) 272, 654, 662
BseNI ACTGG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 902
BseXI GCAGC 2 cut(s) 37, 753
Bsh1236I CGCG 2 cut(s) 567, 875
Bsh1285I CGRYCG 1 cut(s) 721
BshFI GGCC 2 cut(s) 202, 595
BshVI ATCGAT 2 cut(s) 119, 717
BsiEI CGRYCG 1 cut(s) 721
BsiHKAI GWGCWC 3 cut(s) 114, 210, 902
BsiSI CCGG 4 cut(s) 44, 56, 103, 139
BsiWI CGTACG 1 cut(s) 332
BslFI GGGAC 2 cut(s) 666, 693
BslI CCNNNNNNNGG 3 cut(s) 664, 751, 993
BsmAI GTCTC 2 cut(s) 575, 991
BsmBI CGTCTC 1 cut(s) 991
BsmFI GGGAC 2 cut(s) 666, 693
BsmI GAATGC 1 cut(s) 424
BsnI GGCC 2 cut(s) 202, 595
Bso31I GGTCTC 1 cut(s) 575
Bsp1286I GDGCHC 4 cut(s) 114, 210, 649, 902
Bsp13I TCCGGA 1 cut(s) 55
Bsp1407I TGTACA 1 cut(s) 812
Bsp143I GATC 3 cut(s) 157, 714, 718
BspACI CCGC 9 cut(s) 131, 250, 401, 542, 565, 567, 873, 893, 943
BspANI GGCC 2 cut(s) 202, 595
BspCNI CTCAG 3 cut(s) 271, 655, 661
BspDI ATCGAT 2 cut(s) 119, 717
BspEI TCCGGA 1 cut(s) 55
BspFNI CGCG 2 cut(s) 567, 875
BspLI GGNNCC 2 cut(s) 54, 285
BspMAI CTGCAG 1 cut(s) 27
BspPI GGATC 1 cut(s) 722
BspQI GCTCTTC 1 cut(s) 222
BspTNI GGTCTC 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 681
BsrGI TGTACA 1 cut(s) 812
BsrI ACTGG 1 cut(s) 647
BssECI CCNNGG 4 cut(s) 221, 222, 565, 987
BssMI GATC 3 cut(s) 157, 714, 718
BssT1I CCWWGG 1 cut(s) 987
Bst2UI CCWGG 2 cut(s) 37, 223
Bst4CI ACNGT 2 cut(s) 146, 155
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 382
BstAUI TGTACA 1 cut(s) 812
BstC8I GCNNGC 1 cut(s) 893
BstDEI CTNAG 6 cut(s) 258, 438, 648, 663, 669, 710
BstDSI CCRYGG 1 cut(s) 565
BstF5I GGATG 2 cut(s) 64, 217
BstFNI CGCG 2 cut(s) 567, 875
BstHHI GCGC 1 cut(s) 376
BstKTI GATC 3 cut(s) 160, 717, 721
BstMAI GTCTC 2 cut(s) 575, 991
BstMBI GATC 3 cut(s) 157, 714, 718
BstMCI CGRYCG 1 cut(s) 721
BstMWI GCNNNNNNNGC 3 cut(s) 130, 382, 897
BstNI CCWGG 2 cut(s) 37, 223
BstNSI RCATGY 1 cut(s) 739
BstSCI CCNGG 3 cut(s) 35, 43, 221
BstSFI CTRYAG 1 cut(s) 23
BstSLI GKGCMC 1 cut(s) 902
BstUI CGCG 2 cut(s) 567, 875
BstV1I GCAGC 2 cut(s) 37, 753
Bsu15I ATCGAT 2 cut(s) 119, 717
Bsu36I CCTNAGG 1 cut(s) 710
BsuI GTATCC 1 cut(s) 51
BsuRI GGCC 2 cut(s) 202, 595
BsuTUI ATCGAT 2 cut(s) 119, 717
BtgI CCRYGG 1 cut(s) 565
BtsCI GGATG 2 cut(s) 64, 217
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 2 cut(s) 449, 527
Cac8I GCNNGC 1 cut(s) 893
CaiI CAGNNNCTG 1 cut(s) 797
CfoI GCGC 1 cut(s) 376
Cfr13I GGNCC 4 cut(s) 105, 186, 594, 867
Cfr42I CCGCGG 1 cut(s) 568
ClaI ATCGAT 2 cut(s) 119, 717
CpoI CGGWCCG 1 cut(s) 105
CseI GACGC 2 cut(s) 374, 974
Csp6I GTAC 7 cut(s) 142, 147, 333, 457, 757, 813, 877
CspI CGGWCCG 1 cut(s) 105
CviAII CATG 7 cut(s) 70, 82, 513, 700, 736, 751, 979
CviQI GTAC 7 cut(s) 142, 147, 333, 457, 757, 813, 877
DdeI CTNAG 6 cut(s) 258, 438, 648, 663, 669, 710
DpnI GATC 3 cut(s) 159, 716, 720
DpnII GATC 3 cut(s) 157, 714, 718
EaeI YGGCCR 1 cut(s) 200
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 987
Eco24I GRGCYC 2 cut(s) 210, 649
Eco31I GGTCTC 1 cut(s) 575
Eco32I GATATC 2 cut(s) 67, 169
Eco47I GGWCC 3 cut(s) 105, 186, 867
Eco53kI GAGCTC 1 cut(s) 208
Eco57I CTGAAG 1 cut(s) 544
Eco81I CCTNAGG 1 cut(s) 710
EcoICRI GAGCTC 1 cut(s) 208
EcoRII CCWGG 2 cut(s) 35, 221
EcoRV GATATC 2 cut(s) 67, 169
EcoT14I CCWWGG 1 cut(s) 987
EcoT38I GRGCYC 2 cut(s) 210, 649
ErhI CCWWGG 1 cut(s) 987
Esp3I CGTCTC 1 cut(s) 991
FaeI CATG 7 cut(s) 73, 85, 516, 703, 739, 754, 982
FaqI GGGAC 2 cut(s) 666, 693
FatI CATG 7 cut(s) 69, 81, 512, 699, 735, 750, 978
FauI CCCGC 3 cut(s) 243, 549, 900
FbaI TGATCA 1 cut(s) 157
Fnu4HI GCNGC 4 cut(s) 26, 131, 565, 767
FokI GGATG 2 cut(s) 71, 204
FriOI GRGCYC 2 cut(s) 210, 649
Fsp4HI GCNGC 4 cut(s) 26, 131, 565, 767
FspBI CTAG 1 cut(s) 888
GlaI GCGC 1 cut(s) 375
GluI GCNGC 4 cut(s) 26, 131, 565, 767
HaeIII GGCC 2 cut(s) 202, 595
HapII CCGG 4 cut(s) 44, 56, 103, 139
HgaI GACGC 2 cut(s) 374, 974
HhaI GCGC 1 cut(s) 376
Hin1II CATG 7 cut(s) 73, 85, 516, 703, 739, 754, 982
Hin6I GCGC 1 cut(s) 374
HinP1I GCGC 1 cut(s) 374
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HinfI GANTC 3 cut(s) 116, 818, 982
HpaII CCGG 4 cut(s) 44, 56, 103, 139
HphI GGTGA 2 cut(s) 167, 734
Hpy166II GTNNAC 4 cut(s) 6, 640, 870, 900
Hpy188I TCNGA 1 cut(s) 664
Hpy188III TCNNGA 5 cut(s) 56, 179, 260, 389, 931
Hpy8I GTNNAC 4 cut(s) 6, 640, 870, 900
Hpy99I CGWCG 1 cut(s) 913
HpyAV CCTTC 4 cut(s) 199, 274, 467, 891
HpyCH4III ACNGT 2 cut(s) 146, 155
HpyCH4V TGCA 5 cut(s) 25, 81, 351, 470, 900
HpyF10VI GCNNNNNNNGC 3 cut(s) 130, 382, 897
HpyF3I CTNAG 6 cut(s) 258, 438, 648, 663, 669, 710
Hsp92II CATG 7 cut(s) 73, 85, 516, 703, 739, 754, 982
HspAI GCGC 1 cut(s) 374
Kpn2I TCCGGA 1 cut(s) 55
Ksp22I TGATCA 1 cut(s) 157
KspI CCGCGG 1 cut(s) 568
Kzo9I GATC 3 cut(s) 157, 714, 718
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 33, 283
Lsp1109I GCAGC 2 cut(s) 37, 753
LweI GCATC 1 cut(s) 111
MaeI CTAG 1 cut(s) 888
MaeIII GTNAC 1 cut(s) 339
MalI GATC 3 cut(s) 159, 716, 720
MboI GATC 3 cut(s) 157, 714, 718
MboII GAAGA 3 cut(s) 239, 373, 550
MhlI GDGCHC 4 cut(s) 114, 210, 649, 902
MlsI TGGCCA 1 cut(s) 202
MluCI AATT 2 cut(s) 96, 586
MluNI TGGCCA 1 cut(s) 202
MmeI TCCRAC 1 cut(s) 251
MnlI CCTC 4 cut(s) 544, 658, 680, 967
Mox20I TGGCCA 1 cut(s) 202
MroI TCCGGA 1 cut(s) 55
MscI TGGCCA 1 cut(s) 202
MseI TTAA 4 cut(s) 99, 345, 585, 861
MslI CAYNNNNRTG 1 cut(s) 362
Msp20I TGGCCA 1 cut(s) 202
MspA1I CMGCKG 1 cut(s) 567
MspI CCGG 4 cut(s) 44, 56, 103, 139
MspR9I CCNGG 3 cut(s) 37, 45, 223
Mva1269I GAATGC 1 cut(s) 424
MvaI CCWGG 2 cut(s) 37, 223
MvnI CGCG 2 cut(s) 567, 875
MwoI GCNNNNNNNGC 3 cut(s) 130, 382, 897
NciI CCSGG 1 cut(s) 45
NdeII GATC 3 cut(s) 157, 714, 718
NlaIII CATG 7 cut(s) 73, 85, 516, 703, 739, 754, 982
NlaIV GGNNCC 2 cut(s) 54, 285
NspI RCATGY 1 cut(s) 739
PasI CCCWGGG 1 cut(s) 222
PciI ACATGT 1 cut(s) 735
PciSI GCTCTTC 1 cut(s) 222
PctI GAATGC 1 cut(s) 424
PfeI GAWTC 3 cut(s) 116, 818, 982
Pfl23II CGTACG 1 cut(s) 332
PkrI GCNGC 4 cut(s) 27, 132, 566, 768
Ple19I CGATCG 1 cut(s) 721
PscI ACATGT 1 cut(s) 735
PshBI ATTAAT 1 cut(s) 585
Psp124BI GAGCTC 1 cut(s) 210
Psp6I CCWGG 2 cut(s) 35, 221
PspGI CCWGG 2 cut(s) 35, 221
PspLI CGTACG 1 cut(s) 332
PspN4I GGNNCC 2 cut(s) 54, 285
PspPI GGNCC 4 cut(s) 105, 186, 594, 867
PstI CTGCAG 1 cut(s) 27
PstNI CAGNNNCTG 1 cut(s) 797
PvuI CGATCG 1 cut(s) 721
RsaI GTAC 7 cut(s) 143, 148, 334, 458, 758, 814, 878
RsaNI GTAC 7 cut(s) 142, 147, 333, 457, 757, 813, 877
RseI CAYNNNNRTG 1 cut(s) 362
Rsr2I CGGWCCG 1 cut(s) 105
RsrII CGGWCCG 1 cut(s) 105
SacI GAGCTC 1 cut(s) 210
SacII CCGCGG 1 cut(s) 568
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 4 cut(s) 99, 345, 585, 861
SatI GCNGC 4 cut(s) 26, 131, 565, 767
Sau3AI GATC 3 cut(s) 157, 714, 718
Sau96I GGNCC 4 cut(s) 105, 186, 594, 867
ScaI AGTACT 1 cut(s) 758
ScrFI CCNGG 3 cut(s) 37, 45, 223
SduI GDGCHC 4 cut(s) 114, 210, 649, 902
SetI ASST 8 cut(s) 30, 41, 210, 415, 747, 768, 796, 869
SfaNI GCATC 1 cut(s) 111
SfcI CTRYAG 1 cut(s) 23
Sfr303I CCGCGG 1 cut(s) 568
SgrBI CCGCGG 1 cut(s) 568
SinI GGWCC 3 cut(s) 105, 186, 867
SmiMI CAYNNNNRTG 1 cut(s) 362
Sse9I AATT 2 cut(s) 96, 586
SsiI CCGC 9 cut(s) 131, 250, 401, 542, 565, 567, 873, 893, 943
SspMI CTAG 1 cut(s) 888
SstI GAGCTC 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 35, 43, 221
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 2 cut(s) 146, 155
TaqI TCGA 3 cut(s) 119, 717, 777
TaqII GACCGA 1 cut(s) 122
TasI AATT 2 cut(s) 96, 586
TatI WGTACW 3 cut(s) 456, 756, 812
TauI GCSGC 2 cut(s) 133, 567
TfiI GAWTC 3 cut(s) 116, 818, 982
Tru1I TTAA 4 cut(s) 99, 345, 585, 861
Tru9I TTAA 4 cut(s) 99, 345, 585, 861
TscAI CASTG 2 cut(s) 449, 534
TseI GCWGC 2 cut(s) 25, 766
TspDTI ATGAA 3 cut(s) 206, 688, 995
TspGWI ACGGA 2 cut(s) 164, 350
TspRI CASTG 2 cut(s) 449, 534
VneI GTGCAC 1 cut(s) 898
VpaK11BI GGWCC 3 cut(s) 105, 186, 867
VspI ATTAAT 1 cut(s) 585
XceI RCATGY 1 cut(s) 739
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
XspI CTAG 1 cut(s) 888
ZrmI AGTACT 1 cut(s) 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.