Rmu_sc0007688.1_g000001

Putative lipopolysaccharide-modifying enzyme.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007688.1
OG0012971
Physical Location & Seq
Forward (+)
1 .. 818
818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007688.1_g000001.1.cds

Sequence Viewer

Length: 565 bp
gtataagatctatgctgaaggctatgcttggtctgtaagtttgaaatatatcttatcatgcggttctctggcattagtaataacaccggaatatgaggatttcttcagccgcggcctctttcccaaggttaactattggcccatctctcctaatgcaatatgtccttccataaaatctgctgttgactggggtcatggacacctagctgaggctcaggcaataggaagaagagggcagcagtatatggaaaacctaaacatggatcgagtctatgattacatgtttcatctcatcaccaagtactcaaagttgcaggacttcaagccagtccctccacgtaatgccatggaagtatgtgcagattctgtgctttgtcttgctgatgactcgaaacagagggaatatcttgaaaagacaagggaaaactctgttcctgccaccccatgcactctccagcctcctgatagtaatctcatcaagaaatggaagaaagaaaagaaagatgtatttcagactgtggaggatatgaatcttgtaaatgagatacctgggccattgccatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

187

Amino Acids

21.42

Weight (kDa)

6.36

Isoelectric Point (pI)

43.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07220
fragaria_vesca FvH4_3g38610
malus_domestica MD03G1069900.v1.1 MD11G1073700.v1.1 MD17G1174000.v1.1
prunus_persica Prupe.6G057000_v2.0.a1
pyrus_communis pycom03g05560
rosa_chinensis RchiOBHm_Chr5g0069671
rosa_laevigata RLG00000036083
rosa_multiflora Rmu_sc0007688.1_g000001 Rmu_sc0021095.1_g000001
rosa_roxburghii Rroxscaffold_1G00011410
rosa_rugosa Rorug05G0399200
rosa_samantha Rh5AG455900 Rh5BG474900 Rh5CG498400 Rh5DG486400
rosa_wichuraiana Rw5G042540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 112
AciI CCGC 3 cut(s) 61, 110, 112
AclWI GGATC 1 cut(s) 271
AcuI CTGAAG 2 cut(s) 37, 89
AfaI GTAC 1 cut(s) 303
AfiI CCNNNNNNNGG 2 cut(s) 209, 260
AflIII ACRYGT 1 cut(s) 280
AgsI TTSAA 3 cut(s) 44, 323, 411
AjnI CCWGG 1 cut(s) 548
AluBI AGCT 1 cut(s) 207
AluI AGCT 1 cut(s) 207
AlwI GGATC 1 cut(s) 271
AlwNI CAGNNNCTG 1 cut(s) 366
AoxI GGCC 3 cut(s) 113, 138, 552
ApeKI GCWGC 1 cut(s) 236
AspS9I GGNCC 2 cut(s) 139, 552
AsuHPI GGTGA 1 cut(s) 287
BbvCI CCTCAGC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 248
BccI CCATC 1 cut(s) 150
BciT130I CCWGG 1 cut(s) 550
BfaI CTAG 1 cut(s) 204
BglII AGATCT 1 cut(s) 7
BisI GCNGC 3 cut(s) 110, 113, 237
BlsI GCNGC 3 cut(s) 111, 114, 238
BmcAI AGTACT 1 cut(s) 303
Bme1390I CCNGG 1 cut(s) 550
BmgT120I GGNCC 2 cut(s) 139, 552
BmrFI CCNGG 1 cut(s) 550
BmrI ACTGGG 1 cut(s) 197
BmuI ACTGGG 1 cut(s) 197
BoxI GACNNNNGTC 1 cut(s) 190
BpmI CTGGAG 1 cut(s) 438
Bpu10I CCTNAGC 2 cut(s) 208, 214
BsaAI YACGTR 1 cut(s) 339
BsaBI GATNNNNATC 2 cut(s) 469, 529
BsaJI CCNNGG 4 cut(s) 110, 124, 346, 549
BsaWI WCCGGW 1 cut(s) 86
Bsc4I CCNNNNNNNGG 2 cut(s) 209, 260
Bse1I ACTGG 2 cut(s) 192, 327
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 2 cut(s) 469, 529
BseBI CCWGG 1 cut(s) 550
BseDI CCNNGG 4 cut(s) 110, 124, 346, 549
BseJI GATNNNNATC 2 cut(s) 469, 529
BseLI CCNNNNNNNGG 2 cut(s) 209, 260
BseMI GCAATG 1 cut(s) 555
BseMII CTCAG 2 cut(s) 199, 228
BseNI ACTGG 2 cut(s) 192, 327
BseXI GCAGC 1 cut(s) 248
BsgI GTGCAG 1 cut(s) 379
Bsh1236I CGCG 1 cut(s) 112
BshFI GGCC 3 cut(s) 115, 140, 554
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 2 cut(s) 209, 260
BsmFI GGGAC 1 cut(s) 315
BsnI GGCC 3 cut(s) 115, 140, 554
Bsp143I GATC 2 cut(s) 7, 263
Bsp19I CCATGG 1 cut(s) 346
BspACI CCGC 3 cut(s) 61, 110, 112
BspANI GGCC 3 cut(s) 115, 140, 554
BspCNI CTCAG 2 cut(s) 200, 227
BspFNI CGCG 1 cut(s) 112
BspPI GGATC 1 cut(s) 271
BsrDI GCAATG 1 cut(s) 555
BsrI ACTGG 2 cut(s) 192, 327
BssECI CCNNGG 4 cut(s) 110, 124, 346, 549
BssMI GATC 2 cut(s) 7, 263
BssT1I CCWWGG 2 cut(s) 124, 346
Bst2UI CCWGG 1 cut(s) 550
Bst4CI ACNGT 1 cut(s) 518
Bst6I CTCTTC 1 cut(s) 224
BstBAI YACGTR 1 cut(s) 339
BstDEI CTNAG 2 cut(s) 208, 214
BstDSI CCRYGG 2 cut(s) 110, 346
BstENI CCTNNNNNAGG 1 cut(s) 207
BstFNI CGCG 1 cut(s) 112
BstKTI GATC 2 cut(s) 10, 266
BstMBI GATC 2 cut(s) 7, 263
BstNI CCWGG 1 cut(s) 550
BstNSI RCATGY 1 cut(s) 284
BstPAI GACNNNNGTC 1 cut(s) 190
BstSCI CCNGG 1 cut(s) 548
BstUI CGCG 1 cut(s) 112
BstV1I GCAGC 1 cut(s) 248
BstX2I RGATCY 1 cut(s) 7
BstYI RGATCY 1 cut(s) 7
BsuRI GGCC 3 cut(s) 115, 140, 554
BtgI CCRYGG 2 cut(s) 110, 346
CaiI CAGNNNCTG 1 cut(s) 366
Cfr13I GGNCC 2 cut(s) 139, 552
Cfr42I CCGCGG 1 cut(s) 113
Csp6I GTAC 1 cut(s) 302
CviAII CATG 6 cut(s) 58, 195, 260, 281, 347, 445
CviJI RGCY 9 cut(s) 22, 109, 115, 140, 207, 213, 326, 458, 554
CviKI_1 RGCY 9 cut(s) 22, 109, 115, 140, 207, 213, 326, 458, 554
CviQI GTAC 1 cut(s) 302
DdeI CTNAG 2 cut(s) 208, 214
DpnI GATC 2 cut(s) 9, 265
DpnII GATC 2 cut(s) 7, 263
Eam1104I CTCTTC 1 cut(s) 224
EarI CTCTTC 1 cut(s) 224
Eco130I CCWWGG 2 cut(s) 124, 346
Eco57I CTGAAG 2 cut(s) 37, 89
EcoNI CCTNNNNNAGG 1 cut(s) 207
EcoRII CCWGG 1 cut(s) 548
EcoT14I CCWWGG 2 cut(s) 124, 346
ErhI CCWWGG 2 cut(s) 124, 346
FaeI CATG 6 cut(s) 61, 198, 263, 284, 350, 448
FaqI GGGAC 1 cut(s) 315
FatI CATG 6 cut(s) 57, 194, 259, 280, 346, 444
Fnu4HI GCNGC 3 cut(s) 110, 113, 237
Fsp4HI GCNGC 3 cut(s) 110, 113, 237
FspBI CTAG 1 cut(s) 204
GluI GCNGC 3 cut(s) 110, 113, 237
GsuI CTGGAG 1 cut(s) 438
HaeIII GGCC 3 cut(s) 115, 140, 554
HapII CCGG 1 cut(s) 87
Hin1II CATG 6 cut(s) 61, 198, 263, 284, 350, 448
HincII GTYRAC 2 cut(s) 131, 185
HindII GTYRAC 2 cut(s) 131, 185
HinfI GANTC 4 cut(s) 268, 363, 387, 530
HpaI GTTAAC 1 cut(s) 131
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 131, 185
Hpy188I TCNGA 1 cut(s) 514
Hpy188III TCNNGA 3 cut(s) 408, 462, 479
Hpy8I GTNNAC 2 cut(s) 131, 185
HpyAV CCTTC 2 cut(s) 12, 175
HpyCH4III ACNGT 1 cut(s) 518
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 4 cut(s) 156, 314, 360, 448
HpyF3I CTNAG 2 cut(s) 208, 214
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 6 cut(s) 61, 198, 263, 284, 350, 448
KspAI GTTAAC 1 cut(s) 131
KspI CCGCGG 1 cut(s) 113
Kzo9I GATC 2 cut(s) 7, 263
Lsp1109I GCAGC 1 cut(s) 248
MaeI CTAG 1 cut(s) 204
MaeII ACGT 1 cut(s) 338
MalI GATC 2 cut(s) 9, 265
MboI GATC 2 cut(s) 7, 263
MboII GAAGA 4 cut(s) 95, 238, 241, 500
MflI RGATCY 1 cut(s) 7
MlyI GAGTC 2 cut(s) 277, 381
MnlI CCTC 8 cut(s) 89, 126, 203, 225, 343, 391, 469, 515
MseI TTAA 1 cut(s) 130
MspA1I CMGCKG 1 cut(s) 112
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 550
MvaI CCWGG 1 cut(s) 550
MvnI CGCG 1 cut(s) 112
NcoI CCATGG 1 cut(s) 346
NdeII GATC 2 cut(s) 7, 263
NlaIII CATG 6 cut(s) 61, 198, 263, 284, 350, 448
NspI RCATGY 1 cut(s) 284
PciI ACATGT 1 cut(s) 280
PfeI GAWTC 2 cut(s) 363, 530
PkrI GCNGC 3 cut(s) 111, 114, 238
PleI GAGTC 2 cut(s) 276, 381
PpsI GAGTC 2 cut(s) 276, 381
Ppu21I YACGTR 1 cut(s) 339
PscI ACATGT 1 cut(s) 280
PshAI GACNNNNGTC 1 cut(s) 190
Psp6I CCWGG 1 cut(s) 548
PspGI CCWGG 1 cut(s) 548
PspPI GGNCC 2 cut(s) 139, 552
PstNI CAGNNNCTG 1 cut(s) 366
PsuI RGATCY 1 cut(s) 7
RsaI GTAC 1 cut(s) 303
RsaNI GTAC 1 cut(s) 302
SacII CCGCGG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 130
SatI GCNGC 3 cut(s) 110, 113, 237
Sau3AI GATC 2 cut(s) 7, 263
Sau96I GGNCC 2 cut(s) 139, 552
ScaI AGTACT 1 cut(s) 303
SchI GAGTC 2 cut(s) 277, 381
ScrFI CCNGG 1 cut(s) 550
SetI ASST 6 cut(s) 130, 205, 209, 256, 341, 551
Sfr303I CCGCGG 1 cut(s) 113
SgrBI CCGCGG 1 cut(s) 113
SsiI CCGC 3 cut(s) 61, 110, 112
SspMI CTAG 1 cut(s) 204
StyD4I CCNGG 1 cut(s) 548
StyI CCWWGG 2 cut(s) 124, 346
TaaI ACNGT 1 cut(s) 518
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 266, 390
TatI WGTACW 1 cut(s) 301
TauI GCSGC 2 cut(s) 112, 115
TfiI GAWTC 2 cut(s) 363, 530
Tru1I TTAA 1 cut(s) 130
Tru9I TTAA 1 cut(s) 130
TseI GCWGC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 276, 543
XagI CCTNNNNNAGG 1 cut(s) 207
XceI RCATGY 1 cut(s) 284
XspI CTAG 1 cut(s) 204
ZrmI AGTACT 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.