Rh5AG455900

Putative lipopolysaccharide-modifying enzyme.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0012971
Physical Location & Seq
Forward (+)
78178923 .. 78182267
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG455900.1

Sequence Viewer

Length: 1179 bp
ATGCGAATCTCTCCGAGAACCACCGCTCGATCGCCGAGTTACATTCTCCCCTCCGTCATCGGCTTGTGCTGTCTCTCTCTTCTGTTCATGCTCTATAAGGTGAACGATTTCGCCACTCAGACCAGGACAGTCGCCGGCCACAACCTAGAGCCGACGCCGTGGCACCTCTTCAAGCCCAAGACCTTCAACCACGACGCGCTCCCCAGCCGGGCCTACAAGCTCCTCCAGTGCTCCTACCTCGCCTGCCGCTACAGAAACCAAGGCAACGACACGGAGGAAGAAGAAGAGCATCGACGTTCTGCTACTTCCGTTGCCAAAGCCCCGAAATGCCCGGAGTTTTTCCGGTGGATTCACCAGGATCTGGAGCCGTGGGCCAAGACCAAGATTTCTAAGGCTCATGTTGAGGAGGCAAAGAGATACGCTGCTTTCCGAGTGGTGATATCTCAAGGGAAGTTGTATGTGGACTTGTACTACGCTTGTGTGCAGAGCCGGGCTATGTTTACGATTTGGGGGTTGTTGCAGATGCTTAAGAGGTACCCTGGGAGGGTTCCTGATGTGGATTTTATGTTTGATTGCATGGACAAGCCTAGCATTAAGAAGACCGAGCATGTCGCAAAGCCTTTGCCGCTGCTTCGGTATTGCACCAATGACGACCACTTTGATATCCCATTTCCTGATTGGTCTTTCTGGGGATGGCCAGAAACAAATATAGAGCCGTGGACTGAGGAGTTCCAGGCTATCAAACTGGGTGGTCAGGAAACGACTTGGAGAAAGAAGGAGCTTTTGGCATATTGGAAAGGAAATCCAGATGTTGGCTCCCGTGTTCGTGAAGAGTTACTCAACTGTAATGATTCAAAGACGTATAGAGCGCAGATAATGCGTCAGGATTGGGATGAGGAAGCAAAGGCTGGTTTCAAGCAGTCCGAACTATCTAAGCAATGCAATCATCGGTATAAGATCTATGCTGAAGGCTATGCTTGGTCTGTAAGTTTGAAATATATCTTATCATGCGGTTCTCTGGCATTAGTAATAACACCCGAATATGAGGATTTCTTCAGCCGCGGCCTCTTTCCCAAGGTTAACTATTGGCCCATCTCTCCTAATGCAATATGTCCTTCCATAAAATCTGCTGTTGACTGGGGTCATGGACACCTAGCTGAGGTATGCTTCACTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

392

Amino Acids

45.59

Weight (kDa)

8.53

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_90 PF05686 107 - 387 1.6e-115 Glycosyl transferase family 90
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07220
fragaria_vesca FvH4_3g38610
malus_domestica MD03G1069900.v1.1 MD11G1073700.v1.1 MD17G1174000.v1.1
prunus_persica Prupe.6G057000_v2.0.a1
pyrus_communis pycom03g05560
rosa_chinensis RchiOBHm_Chr5g0069671
rosa_laevigata RLG00000036083
rosa_multiflora Rmu_sc0007688.1_g000001 Rmu_sc0021095.1_g000001
rosa_roxburghii Rroxscaffold_1G00011410
rosa_rugosa Rorug05G0399200
rosa_samantha Rh5AG455900 Rh5BG474900 Rh5CG498400 Rh5DG486400
rosa_wichuraiana Rw5G042540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 534
AccB1I GGYRCC 2 cut(s) 162, 534
AccB7I CCANNNNNTGG 2 cut(s) 361, 812
AccBSI CCGCTC 1 cut(s) 26
AccII CGCG 2 cut(s) 197, 1062
AciI CCGC 6 cut(s) 24, 247, 626, 1011, 1060, 1062
AclWI GGATC 1 cut(s) 366
AcoI YGGCCR 2 cut(s) 136, 695
AcuI CTGAAG 2 cut(s) 987, 1039
AcyI GRCGYC 1 cut(s) 155
AfaI GTAC 2 cut(s) 470, 536
AfiI CCNNNNNNNGG 5 cut(s) 208, 361, 544, 812, 1159
AflII CTTAAG 1 cut(s) 527
AgsI TTSAA 5 cut(s) 172, 187, 855, 916, 994
AjnI CCWGG 4 cut(s) 122, 354, 538, 732
AjuI GAANNNNNNNTTGG 2 cut(s) 767, 799
AluBI AGCT 3 cut(s) 220, 781, 1157
AluI AGCT 3 cut(s) 220, 781, 1157
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 1 cut(s) 77
AlwI GGATC 1 cut(s) 366
AlwNI CAGNNNCTG 1 cut(s) 361
AoxI GGCC 6 cut(s) 136, 210, 372, 695, 1063, 1088
ApeKI GCWGC 2 cut(s) 422, 628
ArsI GACNNNNNNTTYG 2 cut(s) 641, 673
Asp700I GAANNNNTTC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 534
AspLEI GCGC 2 cut(s) 199, 871
AspS9I GGNCC 3 cut(s) 210, 372, 1089
AsuC2I CCSGG 3 cut(s) 209, 332, 491
AsuHPI GGTGA 3 cut(s) 112, 344, 448
BalI TGGCCA 1 cut(s) 697
BanI GGYRCC 2 cut(s) 162, 534
BbsI GAAGAC 1 cut(s) 605
Bbv12I GWGCWC 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 1158
BbvI GCAGC 2 cut(s) 409, 615
BccI CCATC 2 cut(s) 687, 1100
BceAI ACGGC 3 cut(s) 142, 352, 700
BciT130I CCWGG 4 cut(s) 124, 356, 540, 734
BcnI CCSGG 3 cut(s) 209, 332, 491
BcoDI GTCTC 1 cut(s) 77
BfaI CTAG 3 cut(s) 146, 588, 1154
BfmI CTRYAG 1 cut(s) 250
BfrI CTTAAG 1 cut(s) 527
BglII AGATCT 1 cut(s) 957
BisI GCNGC 6 cut(s) 247, 423, 626, 629, 1060, 1063
BlsI GCNGC 6 cut(s) 248, 424, 627, 630, 1061, 1064
Bme1390I CCNGG 7 cut(s) 124, 209, 332, 356, 491, 540, 734
BmgT120I GGNCC 3 cut(s) 210, 372, 1089
BmiI GGNNCC 5 cut(s) 164, 366, 536, 549, 817
BmrFI CCNGG 7 cut(s) 124, 209, 332, 356, 491, 540, 734
BmrI ACTGGG 2 cut(s) 755, 1147
BmsI GCATC 2 cut(s) 298, 513
BmuI ACTGGG 2 cut(s) 755, 1147
BoxI GACNNNNGTC 1 cut(s) 1140
BpiI GAAGAC 1 cut(s) 605
BpmI CTGGAG 2 cut(s) 209, 383
Bpu10I CCTNAGC 1 cut(s) 1158
BpuEI CTTGAG 1 cut(s) 429
BpuMI CCSGG 3 cut(s) 209, 332, 491
BsaHI GRCGYC 1 cut(s) 155
BsaJI CCNNGG 8 cut(s) 158, 259, 368, 538, 539, 716, 1060, 1074
BsaWI WCCGGW 1 cut(s) 342
Bsc4I CCNNNNNNNGG 5 cut(s) 208, 361, 544, 812, 1159
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 3 cut(s) 226, 750, 1142
Bse3DI GCAATG 1 cut(s) 944
BseBI CCWGG 4 cut(s) 124, 356, 540, 734
BseDI CCNNGG 8 cut(s) 158, 259, 368, 538, 539, 716, 1060, 1074
BseGI GGATG 2 cut(s) 698, 898
BseLI CCNNNNNNNGG 5 cut(s) 208, 361, 544, 812, 1159
BseMI GCAATG 1 cut(s) 944
BseMII CTCAG 3 cut(s) 131, 714, 1149
BseNI ACTGG 3 cut(s) 226, 750, 1142
BseRI GAGGAG 3 cut(s) 212, 419, 740
BseXI GCAGC 2 cut(s) 409, 615
BseYI CCCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 2 cut(s) 197, 1062
Bsh1285I CGRYCG 1 cut(s) 32
BshFI GGCC 6 cut(s) 138, 212, 374, 697, 1065, 1090
BshNI GGYRCC 2 cut(s) 162, 534
BsiEI CGRYCG 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 5 cut(s) 135, 208, 332, 343, 490
BslI CCNNNNNNNGG 5 cut(s) 208, 361, 544, 812, 1159
BsmAI GTCTC 1 cut(s) 77
BsnI GGCC 6 cut(s) 138, 212, 374, 697, 1065, 1090
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 3 cut(s) 29, 358, 957
BspACI CCGC 6 cut(s) 24, 247, 626, 1011, 1060, 1062
BspANI GGCC 6 cut(s) 138, 212, 374, 697, 1065, 1090
BspCNI CTCAG 3 cut(s) 130, 715, 1150
BspFNI CGCG 2 cut(s) 197, 1062
BspLI GGNNCC 5 cut(s) 164, 366, 536, 549, 817
BspPI GGATC 1 cut(s) 366
BspQI GCTCTTC 1 cut(s) 279
BspT107I GGYRCC 2 cut(s) 162, 534
BspTI CTTAAG 1 cut(s) 527
BsrBI CCGCTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 944
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 3 cut(s) 226, 750, 1142
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 8 cut(s) 158, 259, 368, 538, 539, 716, 1060, 1074
BssMI GATC 3 cut(s) 29, 358, 957
BssNI GRCGYC 1 cut(s) 155
BssT1I CCWWGG 2 cut(s) 259, 1074
Bst2UI CCWGG 4 cut(s) 124, 356, 540, 734
Bst4CI ACNGT 2 cut(s) 130, 845
Bst6I CTCTTC 4 cut(s) 84, 173, 279, 825
BstACI GRCGYC 1 cut(s) 155
BstAFI CTTAAG 1 cut(s) 527
BstAPI GCANNNNNTGC 1 cut(s) 877
BstC8I GCNNGC 2 cut(s) 136, 244
BstDEI CTNAG 5 cut(s) 117, 390, 723, 933, 1158
BstDSI CCRYGG 4 cut(s) 158, 368, 716, 1060
BstENI CCTNNNNNAGG 1 cut(s) 1157
BstF5I GGATG 2 cut(s) 698, 898
BstFNI CGCG 2 cut(s) 197, 1062
BstHHI GCGC 2 cut(s) 199, 871
BstKTI GATC 3 cut(s) 32, 361, 960
BstMAI GTCTC 1 cut(s) 77
BstMBI GATC 3 cut(s) 29, 358, 957
BstMCI CGRYCG 1 cut(s) 32
BstMWI GCNNNNNNNGC 2 cut(s) 625, 877
BstNI CCWGG 4 cut(s) 124, 356, 540, 734
BstNSI RCATGY 1 cut(s) 611
BstPAI GACNNNNGTC 1 cut(s) 1140
BstSCI CCNGG 7 cut(s) 122, 207, 330, 354, 489, 538, 732
BstSFI CTRYAG 1 cut(s) 250
BstUI CGCG 2 cut(s) 197, 1062
BstV1I GCAGC 2 cut(s) 409, 615
BstV2I GAAGAC 1 cut(s) 605
BstX2I RGATCY 2 cut(s) 358, 957
BstYI RGATCY 2 cut(s) 358, 957
BsuRI GGCC 6 cut(s) 138, 212, 374, 697, 1065, 1090
BtgI CCRYGG 4 cut(s) 158, 368, 716, 1060
BtsCI GGATG 2 cut(s) 698, 898
BtsIMutI CAGTG 1 cut(s) 233
Cac8I GCNNGC 2 cut(s) 136, 244
CaiI CAGNNNCTG 1 cut(s) 361
CfoI GCGC 2 cut(s) 199, 871
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 3 cut(s) 210, 372, 1089
Cfr42I CCGCGG 1 cut(s) 1063
CseI GACGC 3 cut(s) 163, 203, 869
Csp6I GTAC 2 cut(s) 469, 535
CspCI CAANNNNNGTGG 2 cut(s) 730, 765
CviAII CATG 6 cut(s) 88, 398, 577, 608, 1008, 1145
CviQI GTAC 2 cut(s) 469, 535
DdeI CTNAG 5 cut(s) 117, 390, 723, 933, 1158
DpnI GATC 3 cut(s) 31, 360, 959
DpnII GATC 3 cut(s) 29, 358, 957
EaeI YGGCCR 2 cut(s) 136, 695
Eam1104I CTCTTC 4 cut(s) 84, 173, 279, 825
EarI CTCTTC 4 cut(s) 84, 173, 279, 825
Eco130I CCWWGG 2 cut(s) 259, 1074
Eco32I GATATC 2 cut(s) 441, 664
Eco57I CTGAAG 2 cut(s) 987, 1039
EcoNI CCTNNNNNAGG 1 cut(s) 1157
EcoRII CCWGG 4 cut(s) 122, 354, 538, 732
EcoRV GATATC 2 cut(s) 441, 664
EcoT14I CCWWGG 2 cut(s) 259, 1074
ErhI CCWWGG 2 cut(s) 259, 1074
FaeI CATG 6 cut(s) 91, 401, 580, 611, 1011, 1148
FatI CATG 6 cut(s) 87, 397, 576, 607, 1007, 1144
Fnu4HI GCNGC 6 cut(s) 247, 423, 626, 629, 1060, 1063
FokI GGATG 2 cut(s) 705, 905
Fsp4HI GCNGC 6 cut(s) 247, 423, 626, 629, 1060, 1063
FspBI CTAG 3 cut(s) 146, 588, 1154
GlaI GCGC 2 cut(s) 198, 870
GluI GCNGC 6 cut(s) 247, 423, 626, 629, 1060, 1063
GsaI CCCAGC 1 cut(s) 207
GsuI CTGGAG 2 cut(s) 209, 383
HaeIII GGCC 6 cut(s) 138, 212, 374, 697, 1065, 1090
HapII CCGG 5 cut(s) 135, 208, 332, 343, 490
HgaI GACGC 3 cut(s) 163, 203, 869
HhaI GCGC 2 cut(s) 199, 871
Hin1I GRCGYC 1 cut(s) 155
Hin1II CATG 6 cut(s) 91, 401, 580, 611, 1011, 1148
Hin6I GCGC 2 cut(s) 197, 869
HinP1I GCGC 2 cut(s) 197, 869
HincII GTYRAC 2 cut(s) 1081, 1135
HindII GTYRAC 2 cut(s) 1081, 1135
HinfI GANTC 3 cut(s) 6, 349, 851
HpaI GTTAAC 1 cut(s) 1081
HpaII CCGG 5 cut(s) 135, 208, 332, 343, 490
HphI GGTGA 3 cut(s) 112, 344, 448
Hpy166II GTNNAC 6 cut(s) 103, 463, 501, 720, 1081, 1135
Hpy188I TCNGA 4 cut(s) 15, 120, 431, 925
Hpy188III TCNNGA 7 cut(s) 362, 551, 674, 755, 806, 827, 884
Hpy8I GTNNAC 6 cut(s) 103, 463, 501, 720, 1081, 1135
Hpy99I CGWCG 3 cut(s) 157, 197, 297
HpyAV CCTTC 4 cut(s) 193, 769, 962, 1125
HpyCH4III ACNGT 2 cut(s) 130, 845
HpyCH4IV ACGT 2 cut(s) 295, 860
HpyCH4V TGCA 6 cut(s) 484, 520, 576, 642, 942, 1106
HpyF10VI GCNNNNNNNGC 2 cut(s) 625, 877
HpyF3I CTNAG 5 cut(s) 117, 390, 723, 933, 1158
HpySE526I ACGT 2 cut(s) 295, 860
Hsp92I GRCGYC 1 cut(s) 155
Hsp92II CATG 6 cut(s) 91, 401, 580, 611, 1011, 1148
HspAI GCGC 2 cut(s) 197, 869
KpnI GGTACC 1 cut(s) 538
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 1081
KspI CCGCGG 1 cut(s) 1063
Kzo9I GATC 3 cut(s) 29, 358, 957
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 6 cut(s) 204, 225, 236, 364, 778, 821
Lsp1109I GCAGC 2 cut(s) 409, 615
LweI GCATC 2 cut(s) 298, 513
MaeI CTAG 3 cut(s) 146, 588, 1154
MaeII ACGT 2 cut(s) 295, 860
MaeIII GTNAC 2 cut(s) 38, 834
MalI GATC 3 cut(s) 31, 360, 959
MbiI CCGCTC 1 cut(s) 26
MboI GATC 3 cut(s) 29, 358, 957
MboII GAAGA 8 cut(s) 71, 160, 290, 293, 296, 610, 842, 1045
MflI RGATCY 2 cut(s) 358, 957
MhlI GDGCHC 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 697
MluNI TGGCCA 1 cut(s) 697
Mox20I TGGCCA 1 cut(s) 697
MroNI GCCGGC 1 cut(s) 134
MroXI GAANNNNTTC 1 cut(s) 107
MscI TGGCCA 1 cut(s) 697
MseI TTAA 4 cut(s) 528, 594, 1080, 1177
Msp20I TGGCCA 1 cut(s) 697
MspA1I CMGCKG 2 cut(s) 628, 1062
MspCI CTTAAG 1 cut(s) 527
MspI CCGG 5 cut(s) 135, 208, 332, 343, 490
MspR9I CCNGG 7 cut(s) 124, 209, 332, 356, 491, 540, 734
MvaI CCWGG 4 cut(s) 124, 356, 540, 734
MvnI CGCG 2 cut(s) 197, 1062
MwoI GCNNNNNNNGC 2 cut(s) 625, 877
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 3 cut(s) 209, 332, 491
NdeII GATC 3 cut(s) 29, 358, 957
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 6 cut(s) 91, 401, 580, 611, 1011, 1148
NlaIV GGNNCC 5 cut(s) 164, 366, 536, 549, 817
NmeAIII GCCGAG 1 cut(s) 60
NspI RCATGY 1 cut(s) 611
PasI CCCWGGG 1 cut(s) 539
PciSI GCTCTTC 1 cut(s) 279
PdiI GCCGGC 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 3 cut(s) 6, 349, 851
PflMI CCANNNNNTGG 2 cut(s) 361, 812
PkrI GCNGC 6 cut(s) 248, 424, 627, 630, 1061, 1064
Ple19I CGATCG 1 cut(s) 32
PshAI GACNNNNGTC 1 cut(s) 1140
Psp6I CCWGG 4 cut(s) 122, 354, 538, 732
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 4 cut(s) 122, 354, 538, 732
PspN4I GGNNCC 5 cut(s) 164, 366, 536, 549, 817
PspPI GGNCC 3 cut(s) 210, 372, 1089
PstNI CAGNNNCTG 1 cut(s) 361
PsuI RGATCY 2 cut(s) 358, 957
PvuI CGATCG 1 cut(s) 32
RsaI GTAC 2 cut(s) 470, 536
RsaNI GTAC 2 cut(s) 469, 535
SacII CCGCGG 1 cut(s) 1063
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 4 cut(s) 528, 594, 1080, 1177
SatI GCNGC 6 cut(s) 247, 423, 626, 629, 1060, 1063
Sau3AI GATC 3 cut(s) 29, 358, 957
Sau96I GGNCC 3 cut(s) 210, 372, 1089
ScrFI CCNGG 7 cut(s) 124, 209, 332, 356, 491, 540, 734
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 2 cut(s) 298, 513
SfcI CTRYAG 1 cut(s) 250
Sfr303I CCGCGG 1 cut(s) 1063
SgrBI CCGCGG 1 cut(s) 1063
SmlI CTYRAG 2 cut(s) 444, 527
SmoI CTYRAG 2 cut(s) 444, 527
SsiI CCGC 6 cut(s) 24, 247, 626, 1011, 1060, 1062
SspMI CTAG 3 cut(s) 146, 588, 1154
StyD4I CCNGG 7 cut(s) 122, 207, 330, 354, 489, 538, 732
StyI CCWWGG 2 cut(s) 259, 1074
TaaI ACNGT 2 cut(s) 130, 845
TaiI ACGT 2 cut(s) 298, 863
TaqI TCGA 2 cut(s) 28, 292
TaqII GACCGA 1 cut(s) 617
TatI WGTACW 1 cut(s) 468
TauI GCSGC 4 cut(s) 249, 628, 1062, 1065
TfiI GAWTC 3 cut(s) 6, 349, 851
Tru1I TTAA 4 cut(s) 528, 594, 1080, 1177
Tru9I TTAA 4 cut(s) 528, 594, 1080, 1177
TscAI CASTG 1 cut(s) 233
TseI GCWGC 2 cut(s) 422, 628
TspDTI ATGAA 1 cut(s) 76
TspGWI ACGGA 3 cut(s) 43, 287, 298
TspRI CASTG 1 cut(s) 233
Van91I CCANNNNNTGG 2 cut(s) 361, 812
Vha464I CTTAAG 1 cut(s) 527
XagI CCTNNNNNAGG 1 cut(s) 1157
XceI RCATGY 1 cut(s) 611
XcmI CCANNNNNNNNNTGG 1 cut(s) 675
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 3 cut(s) 146, 588, 1154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.