Rmu_sc0021095.1_g000001

Putative lipopolysaccharide-modifying enzyme.

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0021095.1
OG0012971
Physical Location & Seq
Forward (+)
29 .. 836
808 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0021095.1_g000001.1.cds

Sequence Viewer

Length: 432 bp
atgcttaagaggtaccctgggagggttcctgatgtggattttatgtttgattgtatggacaagcctagcattaagaagacagagcatgtcgcaaagcctttgccgctgcttcggtattgcaccaatgacgaccactttgatatcccatttcctgattggtctttctggggatggccagaaacaaatatagagccgtggactgaggagttccaggctatcaaactgggtggtcaggaaacgacttggagaaagaaggagcttttggcatattggaaaggaaatccagatgttggctcccgcgttcgtgaagagttactcaactgtaatgattcaaagacgtatagagcgcagataatgcgtcaggattgggatgaggaagcaaaggctggtttcaagcagtccgaactatctaagcagtgcaatcatcggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00514 map00514
Pfam Domains
Protein Families
Glyco_transf_90

Protein Analysis

143

Amino Acids

17.03

Weight (kDa)

5.95

Isoelectric Point (pI)

40.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012971)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G07220
fragaria_vesca FvH4_3g38610
malus_domestica MD03G1069900.v1.1 MD11G1073700.v1.1 MD17G1174000.v1.1
prunus_persica Prupe.6G057000_v2.0.a1
pyrus_communis pycom03g05560
rosa_chinensis RchiOBHm_Chr5g0069671
rosa_laevigata RLG00000036083
rosa_multiflora Rmu_sc0007688.1_g000001 Rmu_sc0021095.1_g000001
rosa_roxburghii Rroxscaffold_1G00011410
rosa_rugosa Rorug05G0399200
rosa_samantha Rh5AG455900 Rh5BG474900 Rh5CG498400 Rh5DG486400
rosa_wichuraiana Rw5G042540

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 12
AccB1I GGYRCC 1 cut(s) 12
AccB7I CCANNNNNTGG 1 cut(s) 290
AccII CGCG 1 cut(s) 300
AciI CCGC 2 cut(s) 104, 298
AcoI YGGCCR 1 cut(s) 173
AfaI GTAC 1 cut(s) 14
AfiI CCNNNNNNNGG 2 cut(s) 22, 290
AflII CTTAAG 1 cut(s) 5
AgsI TTSAA 2 cut(s) 333, 394
AjnI CCWGG 2 cut(s) 16, 210
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
AoxI GGCC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 106
ArsI GACNNNNNNTTYG 2 cut(s) 119, 151
Asp718I GGTACC 1 cut(s) 12
AspLEI GCGC 1 cut(s) 349
BalI TGGCCA 1 cut(s) 175
BanI GGYRCC 1 cut(s) 12
BbsI GAAGAC 1 cut(s) 83
BbvI GCAGC 1 cut(s) 93
BccI CCATC 1 cut(s) 165
BceAI ACGGC 1 cut(s) 178
BciT130I CCWGG 2 cut(s) 18, 212
BfaI CTAG 1 cut(s) 66
BfrI CTTAAG 1 cut(s) 5
BisI GCNGC 2 cut(s) 104, 107
BlsI GCNGC 2 cut(s) 105, 108
Bme1390I CCNGG 2 cut(s) 18, 212
BmiI GGNNCC 3 cut(s) 14, 27, 295
BmrFI CCNGG 2 cut(s) 18, 212
BmrI ACTGGG 1 cut(s) 233
BmuI ACTGGG 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 83
BsaJI CCNNGG 3 cut(s) 16, 17, 194
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 290
Bse1I ACTGG 1 cut(s) 228
BseBI CCWGG 2 cut(s) 18, 212
BseDI CCNNGG 3 cut(s) 16, 17, 194
BseGI GGATG 2 cut(s) 176, 376
BseLI CCNNNNNNNGG 2 cut(s) 22, 290
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 218
BseXI GCAGC 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 1 cut(s) 175
BshNI GGYRCC 1 cut(s) 12
BslI CCNNNNNNNGG 2 cut(s) 22, 290
BsnI GGCC 1 cut(s) 175
BspACI CCGC 2 cut(s) 104, 298
BspANI GGCC 1 cut(s) 175
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 3 cut(s) 14, 27, 295
BspT107I GGYRCC 1 cut(s) 12
BspTI CTTAAG 1 cut(s) 5
BsrI ACTGG 1 cut(s) 228
BssECI CCNNGG 3 cut(s) 16, 17, 194
Bst2UI CCWGG 2 cut(s) 18, 212
Bst4CI ACNGT 1 cut(s) 323
Bst6I CTCTTC 1 cut(s) 303
BstAFI CTTAAG 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 355
BstDEI CTNAG 2 cut(s) 201, 411
BstDSI CCRYGG 1 cut(s) 194
BstF5I GGATG 2 cut(s) 176, 376
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 1 cut(s) 349
BstMWI GCNNNNNNNGC 2 cut(s) 103, 355
BstNI CCWGG 2 cut(s) 18, 212
BstNSI RCATGY 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 16, 210
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 93
BstV2I GAAGAC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 175
BtgI CCRYGG 1 cut(s) 194
BtsCI GGATG 2 cut(s) 176, 376
BtsI GCAGTG 1 cut(s) 422
BtsIMutI CAGTG 1 cut(s) 422
CfoI GCGC 1 cut(s) 349
CseI GACGC 1 cut(s) 347
Csp6I GTAC 1 cut(s) 13
CspCI CAANNNNNGTGG 2 cut(s) 208, 243
CviAII CATG 1 cut(s) 86
CviJI RGCY 8 cut(s) 64, 97, 175, 193, 215, 259, 294, 386
CviKI_1 RGCY 8 cut(s) 64, 97, 175, 193, 215, 259, 294, 386
CviQI GTAC 1 cut(s) 13
DdeI CTNAG 2 cut(s) 201, 411
EaeI YGGCCR 1 cut(s) 173
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco32I GATATC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 16, 210
EcoRV GATATC 1 cut(s) 142
FaeI CATG 1 cut(s) 89
FaiI YATR 6 cut(s) 44, 56, 87, 188, 268, 342
FatI CATG 1 cut(s) 85
FauI CCCGC 1 cut(s) 305
Fnu4HI GCNGC 2 cut(s) 104, 107
FokI GGATG 2 cut(s) 183, 383
Fsp4HI GCNGC 2 cut(s) 104, 107
FspBI CTAG 1 cut(s) 66
GlaI GCGC 1 cut(s) 348
GluI GCNGC 2 cut(s) 104, 107
HaeIII GGCC 1 cut(s) 175
HgaI GACGC 1 cut(s) 347
HhaI GCGC 1 cut(s) 349
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 1 cut(s) 403
Hpy188III TCNNGA 6 cut(s) 29, 152, 233, 284, 305, 362
Hpy8I GTNNAC 1 cut(s) 198
HpyAV CCTTC 1 cut(s) 247
HpyCH4III ACNGT 1 cut(s) 323
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 2 cut(s) 120, 420
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 355
HpyF3I CTNAG 2 cut(s) 201, 411
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 347
KpnI GGTACC 1 cut(s) 16
LmnI GCTCC 2 cut(s) 256, 299
Lsp1109I GCAGC 1 cut(s) 93
MaeI CTAG 1 cut(s) 66
MaeII ACGT 1 cut(s) 338
MaeIII GTNAC 1 cut(s) 312
MboII GAAGA 2 cut(s) 88, 320
MlsI TGGCCA 1 cut(s) 175
MluNI TGGCCA 1 cut(s) 175
MnlI CCTC 4 cut(s) 3, 15, 196, 367
Mox20I TGGCCA 1 cut(s) 175
MscI TGGCCA 1 cut(s) 175
MseI TTAA 2 cut(s) 6, 72
Msp20I TGGCCA 1 cut(s) 175
MspA1I CMGCKG 1 cut(s) 106
MspCI CTTAAG 1 cut(s) 5
MspR9I CCNGG 2 cut(s) 18, 212
MvaI CCWGG 2 cut(s) 18, 212
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 2 cut(s) 103, 355
NlaIII CATG 1 cut(s) 89
NlaIV GGNNCC 3 cut(s) 14, 27, 295
NspI RCATGY 1 cut(s) 89
PasI CCCWGGG 1 cut(s) 17
PfeI GAWTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 290
PkrI GCNGC 2 cut(s) 105, 108
Psp6I CCWGG 2 cut(s) 16, 210
PspGI CCWGG 2 cut(s) 16, 210
PspN4I GGNNCC 3 cut(s) 14, 27, 295
RsaI GTAC 1 cut(s) 14
RsaNI GTAC 1 cut(s) 13
SaqAI TTAA 2 cut(s) 6, 72
SatI GCNGC 2 cut(s) 104, 107
ScrFI CCNGG 2 cut(s) 18, 212
SetI ASST 3 cut(s) 14, 261, 341
SmlI CTYRAG 1 cut(s) 5
SmoI CTYRAG 1 cut(s) 5
SsiI CCGC 2 cut(s) 104, 298
SspMI CTAG 1 cut(s) 66
StyD4I CCNGG 2 cut(s) 16, 210
TaaI ACNGT 1 cut(s) 323
TaiI ACGT 1 cut(s) 341
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 6, 72
Tru9I TTAA 2 cut(s) 6, 72
TscAI CASTG 1 cut(s) 422
TseI GCWGC 1 cut(s) 106
TspRI CASTG 1 cut(s) 422
Van91I CCANNNNNTGG 1 cut(s) 290
Vha464I CTTAAG 1 cut(s) 5
XceI RCATGY 1 cut(s) 89
XcmI CCANNNNNNNNNTGG 1 cut(s) 153
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.