Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006143

Physical Location & Seq

Genomic Coordinates Reverse (-)

4547122 .. 4547814

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05740.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGATTGCTTGGTTGTCTGGAATTCTCTGCATGCCAGTATTGCTCGTATATGGTACATTCGTCGAGTTGAAGCTGGTTCTTCCATATATGACCCTGCACACAGCCGTGTTGTTAACTCTGCATATTTTTCCCCGATGTCTGGCAGCAAAATTCTTAGCACTTCACAGGATAGCCGTATTCGTATATGGGACTCTATATTCGGCAATATGGATACCCCAAGCCGAGAGATTGTACACAGTCATGATTTCAATCGTCATCTTGACTCCTTTCAAAACGTCAGCGAAGGACAACTACTTGCCGAGGTCACGGATCCAAACATCATTACAATCAATCCAGTGAACAAGCTGCATCGGCGTGATGATGTTTTGATATGGCAGTTCAAGGTTTGGGGTTACACTCATCCGCTAACTGTACTTCCAGTATGTAAATTATCAAACTTGGAATTCCATACATCATCATATACTGATATGTCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0031461 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04115 ko04120 ko05161 ko05200 ko05202 ko05210 ko05212 ko05213 ko05214 ko05216 ko05217 ko05218 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map03420 map04115 map04120 map05161 map05200 map05202 map05210 map05212 map05213 map05214 map05216 map05217 map05218 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

WD40

Protein Analysis

160

Amino Acids

18.25

Weight (kDa)

6.42

Isoelectric Point (pI)

48.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58760 AT5G58760
fragaria_vesca	FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500
malus_domestica	MD11G1075200.v1.1
prunus_persica	Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1
pyrus_communis	pycom03g05740 pycom11g06250
rosa_chinensis	RchiOBHm_Chr5g0069361
rosa_laevigata	RLG00000036049
rosa_multiflora	Rmu_sc0002658.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011560
rosa_rugosa	Rorug05G0397300
rosa_samantha	Rh5AG453900 Rh5BG472900 Rh5CG495500 Rh5DG485300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	404
AclWI	GGATC	2 cut(s)	305, 318
AcsI	RAATTY	3 cut(s)	22, 150, 443
AfaI	GTAC	3 cut(s)	56, 234, 414
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	4 cut(s)	71, 250, 272, 382
AleI	CACNNNNGTG	1 cut(s)	105
AluBI	AGCT	2 cut(s)	74, 346
AluI	AGCT	2 cut(s)	74, 346
AlwI	GGATC	2 cut(s)	305, 318
ApeKI	GCWGC	2 cut(s)	144, 346
ApoI	RAATTY	3 cut(s)	22, 150, 443
ArsI	GACNNNNNNTTYG	2 cut(s)	182, 214
BaeI	ACNNNNGTAYC	2 cut(s)	46, 79
BamHI	GGATCC	1 cut(s)	310
BarI	GAAGNNNNNNTAC	2 cut(s)	276, 308
BbvI	GCAGC	2 cut(s)	156, 333
BceAI	ACGGC	2 cut(s)	90, 159
BciVI	GTATCC	1 cut(s)	205
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	2 cut(s)	145, 347
BlsI	GCNGC	2 cut(s)	146, 348
BmiI	GGNNCC	1 cut(s)	312
BmsI	GCATC	1 cut(s)	358
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	3 cut(s)	36, 335, 419
Bse8I	GATNNNNATC	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	1 cut(s)	400
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseNI	ACTGG	3 cut(s)	36, 335, 419
BseXI	GCAGC	2 cut(s)	156, 333
BsgI	GTGCAG	1 cut(s)	81
BslFI	GGGAC	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	203
Bsp1407I	TGTACA	1 cut(s)	232
Bsp143I	GATC	1 cut(s)	310
BspACI	CCGC	1 cut(s)	404
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	2 cut(s)	305, 318
BsrGI	TGTACA	1 cut(s)	232
BsrI	ACTGG	3 cut(s)	36, 335, 419
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	1 cut(s)	310
Bst4CI	ACNGT	2 cut(s)	239, 412
BstAUI	TGTACA	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	155
BstF5I	GGATG	1 cut(s)	400
BstKTI	GATC	1 cut(s)	313
BstMBI	GATC	1 cut(s)	310
BstMWI	GCNNNNNNNGC	2 cut(s)	41, 352
BstNSI	RCATGY	1 cut(s)	35
BstV1I	GCAGC	2 cut(s)	156, 333
BstX2I	RGATCY	1 cut(s)	310
BstYI	RGATCY	1 cut(s)	310
BsuI	GTATCC	1 cut(s)	205
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	33
CciI	TCATGA	1 cut(s)	241
Csp6I	GTAC	3 cut(s)	55, 233, 413
CviAII	CATG	2 cut(s)	32, 242
CviJI	RGCY	5 cut(s)	74, 105, 174, 222, 346
CviKI_1	RGCY	5 cut(s)	74, 105, 174, 222, 346
CviQI	GTAC	3 cut(s)	55, 233, 413
DdeI	CTNAG	1 cut(s)	155
DpnI	GATC	1 cut(s)	312
DpnII	GATC	1 cut(s)	310
EcoRI	GAATTC	2 cut(s)	22, 443
FaeI	CATG	2 cut(s)	35, 245
FaqI	GGGAC	1 cut(s)	203
FatI	CATG	2 cut(s)	31, 241
Fnu4HI	GCNGC	2 cut(s)	145, 347
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	2 cut(s)	145, 347
GluI	GCNGC	2 cut(s)	145, 347
Hin1II	CATG	2 cut(s)	35, 245
HincII	GTYRAC	1 cut(s)	115
HindII	GTYRAC	1 cut(s)	115
HinfI	GANTC	2 cut(s)	191, 263
HpaI	GTTAAC	1 cut(s)	115
Hpy166II	GTNNAC	3 cut(s)	115, 235, 340
Hpy188III	TCNNGA	3 cut(s)	19, 242, 260
Hpy8I	GTNNAC	3 cut(s)	115, 235, 340
Hpy99I	CGWCG	1 cut(s)	66
HpyAV	CCTTC	1 cut(s)	278
HpyCH4III	ACNGT	2 cut(s)	239, 412
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	4 cut(s)	31, 98, 122, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	41, 352
HpyF3I	CTNAG	1 cut(s)	155
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	2 cut(s)	35, 245
KspAI	GTTAAC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	310
LpnPI	CCDG	8 cut(s)	4, 49, 60, 108, 126, 152, 348, 432
Lsp1109I	GCAGC	2 cut(s)	156, 333
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	304, 392
MalI	GATC	1 cut(s)	312
MboI	GATC	1 cut(s)	310
MboII	GAAGA	1 cut(s)	72
MflI	RGATCY	1 cut(s)	310
MluCI	AATT	4 cut(s)	22, 150, 428, 443
MlyI	GAGTC	2 cut(s)	185, 257
MnlI	CCTC	1 cut(s)	295
MseI	TTAA	2 cut(s)	114, 478
MslI	CAYNNNNRTG	3 cut(s)	105, 240, 354
MwoI	GCNNNNNNNGC	2 cut(s)	41, 352
NdeII	GATC	1 cut(s)	310
NlaIII	CATG	2 cut(s)	35, 245
NlaIV	GGNNCC	1 cut(s)	312
NmeAIII	GCCGAG	2 cut(s)	248, 325
NmuCI	GTSAC	1 cut(s)	304
NspI	RCATGY	1 cut(s)	35
OliI	CACNNNNGTG	1 cut(s)	105
PaeI	GCATGC	1 cut(s)	35
PagI	TCATGA	1 cut(s)	241
PkrI	GCNGC	2 cut(s)	146, 348
PleI	GAGTC	2 cut(s)	185, 257
PpsI	GAGTC	2 cut(s)	185, 257
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	310
RsaI	GTAC	3 cut(s)	56, 234, 414
RsaNI	GTAC	3 cut(s)	55, 233, 413
RseI	CAYNNNNRTG	3 cut(s)	105, 240, 354
SaqAI	TTAA	2 cut(s)	114, 478
SatI	GCNGC	2 cut(s)	145, 347
Sau3AI	GATC	1 cut(s)	310
SchI	GAGTC	2 cut(s)	185, 257
SetI	ASST	5 cut(s)	76, 279, 306, 348, 387
SfaNI	GCATC	1 cut(s)	358
SmiMI	CAYNNNNRTG	3 cut(s)	105, 240, 354
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	4 cut(s)	22, 150, 428, 443
SsiI	CCGC	1 cut(s)	404
TaaI	ACNGT	2 cut(s)	239, 412
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	1 cut(s)	64
TasI	AATT	4 cut(s)	22, 150, 428, 443
TatI	WGTACW	2 cut(s)	232, 412
Tru1I	TTAA	2 cut(s)	114, 478
Tru9I	TTAA	2 cut(s)	114, 478
TscAI	CASTG	1 cut(s)	342
TseFI	GTSAC	1 cut(s)	304
TseI	GCWGC	2 cut(s)	144, 346
Tsp45I	GTSAC	1 cut(s)	304
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	1 cut(s)	342
XapI	RAATTY	3 cut(s)	22, 150, 443
XceI	RCATGY	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.