Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002658.1

Orthogroup ID

OG0006143

Physical Location & Seq

Genomic Coordinates Forward (+)

20415 .. 20864

Gene Structure 450 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002658.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atgcccccgcggactagaagaatgccatttccgaatgtggtgatcgagagagacaccgactccgagcaaagctcatcggaagaagaagaagaagaagacgaagacgaaccggcggtgttggtggagagcgaaaatgaagagaaagctgacgaggccaagaagaaagggaaagcgcccattactgtttctctcaagaaagtttgcaaggtcaaatcttttaacccattaccgttttcaattttactgtctttcttgaatttaccaagtaaggcctccgttattgatcaagtttttggtgagttcatttcggtttgtaagaagcctggacatgaagccggatttaaaggagctacttatattgattgcccaatgaaaccttgctttctttgcaaaatgcctggtaaatctccaagcacagcaatagcaatgggattgcaaataaggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0031461 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04115 ko04120 ko05161 ko05200 ko05202 ko05210 ko05212 ko05213 ko05214 ko05216 ko05217 ko05218 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map03420 map04115 map04120 map05161 map05200 map05202 map05210 map05212 map05213 map05214 map05216 map05217 map05218 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

WD40

Protein Analysis

149

Amino Acids

16.51

Weight (kDa)

5.36

Isoelectric Point (pI)

67.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58760 AT5G58760
fragaria_vesca	FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500
malus_domestica	MD11G1075200.v1.1
prunus_persica	Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1
pyrus_communis	pycom03g05740 pycom11g06250
rosa_chinensis	RchiOBHm_Chr5g0069361
rosa_laevigata	RLG00000036049
rosa_multiflora	Rmu_sc0002658.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011560
rosa_rugosa	Rorug05G0397300
rosa_samantha	Rh5AG453900 Rh5BG472900 Rh5CG495500 Rh5DG485300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	10
AciI	CCGC	3 cut(s)	8, 10, 113
AcsI	RAATTY	1 cut(s)	256
AgsI	TTSAA	2 cut(s)	237, 256
AjnI	CCWGG	2 cut(s)	322, 397
AluBI	AGCT	3 cut(s)	72, 146, 350
AluI	AGCT	3 cut(s)	72, 146, 350
Alw26I	GTCTC	1 cut(s)	45
AoxI	GGCC	2 cut(s)	153, 270
ApoI	RAATTY	1 cut(s)	256
AspLEI	GCGC	1 cut(s)	175
AsuHPI	GGTGA	2 cut(s)	52, 308
BbsI	GAAGAC	2 cut(s)	102, 108
BciT130I	CCWGG	2 cut(s)	324, 399
BclI	TGATCA	1 cut(s)	283
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	324, 399
BmrFI	CCNGG	2 cut(s)	324, 399
BpiI	GAAGAC	2 cut(s)	102, 108
BplI	GAGNNNNNCTC	2 cut(s)	56, 88
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	8
BsaXI	ACNNNNNCTCC	2 cut(s)	44, 74
Bse118I	RCCGGY	1 cut(s)	109
Bse3DI	GCAATG	1 cut(s)	432
BseBI	CCWGG	2 cut(s)	324, 399
BseDI	CCNNGG	1 cut(s)	8
BseGI	GGATG	1 cut(s)	450
BseMI	GCAATG	1 cut(s)	432
Bsh1236I	CGCG	1 cut(s)	10
BshFI	GGCC	2 cut(s)	155, 272
BsiSI	CCGG	2 cut(s)	110, 336
BsmAI	GTCTC	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	155, 272
Bsp143I	GATC	2 cut(s)	42, 283
BspACI	CCGC	3 cut(s)	8, 10, 113
BspANI	GGCC	2 cut(s)	155, 272
BspFNI	CGCG	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	432
BsrFI	RCCGGY	1 cut(s)	109
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	1 cut(s)	8
BssMI	GATC	2 cut(s)	42, 283
Bst2UI	CCWGG	2 cut(s)	324, 399
Bst4CI	ACNGT	3 cut(s)	184, 231, 246
Bst6I	CTCTTC	1 cut(s)	132
BstDSI	CCRYGG	1 cut(s)	8
BstF5I	GGATG	1 cut(s)	450
BstFNI	CGCG	1 cut(s)	10
BstH2I	RGCGCY	1 cut(s)	176
BstHHI	GCGC	1 cut(s)	175
BstKTI	GATC	2 cut(s)	45, 286
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	2 cut(s)	42, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 387
BstNI	CCWGG	2 cut(s)	324, 399
BstSCI	CCNGG	2 cut(s)	322, 397
BstUI	CGCG	1 cut(s)	10
BstV2I	GAAGAC	2 cut(s)	102, 108
BsuRI	GGCC	2 cut(s)	155, 272
BtgI	CCRYGG	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	450
CfoI	GCGC	1 cut(s)	175
Cfr10I	RCCGGY	1 cut(s)	109
Cfr42I	CCGCGG	1 cut(s)	11
CviAII	CATG	1 cut(s)	329
CviJI	RGCY	7 cut(s)	72, 146, 155, 272, 322, 335, 350
CviKI_1	RGCY	7 cut(s)	72, 146, 155, 272, 322, 335, 350
DpnI	GATC	2 cut(s)	44, 285
DpnII	GATC	2 cut(s)	42, 283
DraI	TTTAAA	1 cut(s)	343
Eam1104I	CTCTTC	1 cut(s)	132
EarI	CTCTTC	1 cut(s)	132
Eco147I	AGGCCT	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	322, 397
FaeI	CATG	1 cut(s)	332
FaiI	YATR	2 cut(s)	330, 357
FatI	CATG	1 cut(s)	328
FauI	CCCGC	1 cut(s)	15
FbaI	TGATCA	1 cut(s)	283
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	176
HaeIII	GGCC	2 cut(s)	155, 272
HapII	CCGG	2 cut(s)	110, 336
HhaI	GCGC	1 cut(s)	175
Hin1II	CATG	1 cut(s)	332
Hin6I	GCGC	1 cut(s)	173
HinP1I	GCGC	1 cut(s)	173
HinfI	GANTC	1 cut(s)	59
HpaII	CCGG	2 cut(s)	110, 336
HphI	GGTGA	2 cut(s)	52, 308
Hpy188I	TCNGA	3 cut(s)	33, 64, 79
Hpy188III	TCNNGA	3 cut(s)	46, 193, 253
HpyCH4III	ACNGT	3 cut(s)	184, 231, 246
HpyCH4V	TGCA	3 cut(s)	204, 390, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 387
Hsp92II	CATG	1 cut(s)	332
HspAI	GCGC	1 cut(s)	173
Ksp22I	TGATCA	1 cut(s)	283
KspI	CCGCGG	1 cut(s)	11
Kzo9I	GATC	2 cut(s)	42, 283
LmnI	GCTCC	1 cut(s)	347
LpnPI	CCDG	6 cut(s)	123, 309, 336, 349, 384, 411
MaeI	CTAG	1 cut(s)	15
MalI	GATC	2 cut(s)	44, 285
MboI	GATC	2 cut(s)	42, 283
MluCI	AATT	2 cut(s)	237, 256
MlyI	GAGTC	1 cut(s)	53
MnlI	CCTC	2 cut(s)	145, 283
MseI	TTAA	2 cut(s)	219, 342
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	2 cut(s)	110, 336
MspR9I	CCNGG	2 cut(s)	324, 399
Mva1269I	GAATGC	1 cut(s)	27
MvaI	CCWGG	2 cut(s)	324, 399
MvnI	CGCG	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	152, 387
NdeII	GATC	2 cut(s)	42, 283
NlaIII	CATG	1 cut(s)	332
PceI	AGGCCT	1 cut(s)	272
PctI	GAATGC	1 cut(s)	27
PleI	GAGTC	1 cut(s)	53
PpsI	GAGTC	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	322, 397
PspGI	CCWGG	2 cut(s)	322, 397
SacII	CCGCGG	1 cut(s)	11
SaqAI	TTAA	2 cut(s)	219, 342
Sau3AI	GATC	2 cut(s)	42, 283
SchI	GAGTC	1 cut(s)	53
ScrFI	CCNGG	2 cut(s)	324, 399
SetI	ASST	5 cut(s)	74, 148, 210, 352, 379
Sfr303I	CCGCGG	1 cut(s)	11
SgrBI	CCGCGG	1 cut(s)	11
SmlI	CTYRAG	1 cut(s)	191
SmoI	CTYRAG	1 cut(s)	191
Sse9I	AATT	2 cut(s)	237, 256
SseBI	AGGCCT	1 cut(s)	272
SsiI	CCGC	3 cut(s)	8, 10, 113
SspMI	CTAG	1 cut(s)	15
StuI	AGGCCT	1 cut(s)	272
StyD4I	CCNGG	2 cut(s)	322, 397
TaaI	ACNGT	3 cut(s)	184, 231, 246
TaqI	TCGA	1 cut(s)	45
TasI	AATT	2 cut(s)	237, 256
Tru1I	TTAA	2 cut(s)	219, 342
Tru9I	TTAA	2 cut(s)	219, 342
TspDTI	ATGAA	4 cut(s)	150, 292, 345, 386
TspGWI	ACGGA	1 cut(s)	265
XapI	RAATTY	1 cut(s)	256
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.