Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006143

Physical Location & Seq

Genomic Coordinates Reverse (-)

54599053 .. 54599343

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0397300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGGAACATGGTCTATGTCCAGTAATTTTGGAGACTGATTGTTTGGTTTTGAAGCAACAAGTGTGTCAGGAGGAGCTACAAAATTATTCTATTCTTGGAAGGTTATATGAGGACCTCAGACAAGATTTGAAAGAGGTGAACCAAGTTAGAATTATTCATGCTAGAAGAGAGGCAAACATGGCTACGCACAAATTGGCAGCTCATGCTGCAGATTTTGATCAAGCTTTCTTTTGGTCTAATATTCCTTCCTTCATTCAAGATGTAATAGAATCTGAGAAATGTATTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0031461 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04115 ko04120 ko05161 ko05200 ko05202 ko05210 ko05212 ko05213 ko05214 ko05216 ko05217 ko05218 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map03420 map04115 map04120 map05161 map05200 map05202 map05210 map05212 map05213 map05214 map05216 map05217 map05218 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

WD40

Protein Analysis

96

Amino Acids

11.13

Weight (kDa)

5.04

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 69	2.2e-09	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58760 AT5G58760
fragaria_vesca	FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500
malus_domestica	MD11G1075200.v1.1
prunus_persica	Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1
pyrus_communis	pycom03g05740 pycom11g06250
rosa_chinensis	RchiOBHm_Chr5g0069361
rosa_laevigata	RLG00000036049
rosa_multiflora	Rmu_sc0002658.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011560
rosa_rugosa	Rorug05G0397300
rosa_samantha	Rh5AG453900 Rh5BG472900 Rh5CG495500 Rh5DG485300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	3 cut(s)	52, 130, 257
AluBI	AGCT	3 cut(s)	76, 200, 224
AluI	AGCT	3 cut(s)	76, 200, 224
Alw26I	GTCTC	1 cut(s)	26
ApeKI	GCWGC	2 cut(s)	197, 206
ArsI	GACNNNNNNTTYG	2 cut(s)	25, 57
AspS9I	GGNCC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	148
AvaII	GGWCC	1 cut(s)	112
BbvI	GCAGC	2 cut(s)	193, 209
BclI	TGATCA	1 cut(s)	217
BcoDI	GTCTC	1 cut(s)	26
BfaI	CTAG	1 cut(s)	162
BfmI	CTRYAG	1 cut(s)	207
BisI	GCNGC	2 cut(s)	198, 207
BlsI	GCNGC	2 cut(s)	199, 208
Bme18I	GGWCC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	112
BsaBI	GATNNNNATC	1 cut(s)	216
Bse1I	ACTGG	1 cut(s)	20
Bse8I	GATNNNNATC	1 cut(s)	216
BseJI	GATNNNNATC	1 cut(s)	216
BseMII	CTCAG	2 cut(s)	130, 264
BseNI	ACTGG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	86
BseXI	GCAGC	2 cut(s)	193, 209
BsmAI	GTCTC	1 cut(s)	26
Bsp143I	GATC	1 cut(s)	217
BspCNI	CTCAG	2 cut(s)	129, 265
BspMAI	CTGCAG	1 cut(s)	211
BsrI	ACTGG	1 cut(s)	20
BssMI	GATC	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	203
BstDEI	CTNAG	2 cut(s)	116, 273
BstKTI	GATC	1 cut(s)	220
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	1 cut(s)	217
BstMWI	GCNNNNNNNGC	3 cut(s)	179, 203, 206
BstSFI	CTRYAG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	193, 209
Cfr13I	GGNCC	1 cut(s)	112
CviAII	CATG	4 cut(s)	8, 158, 178, 203
CviJI	RGCY	4 cut(s)	76, 182, 200, 224
CviKI_1	RGCY	4 cut(s)	76, 182, 200, 224
DdeI	CTNAG	2 cut(s)	116, 273
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco47I	GGWCC	1 cut(s)	112
EcoO109I	RGGNCCY	1 cut(s)	112
FaeI	CATG	4 cut(s)	11, 161, 181, 206
FaiI	YATR	7 cut(s)	9, 16, 106, 108, 159, 179, 204
FatI	CATG	4 cut(s)	7, 157, 177, 202
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	2 cut(s)	198, 207
Fsp4HI	GCNGC	2 cut(s)	198, 207
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	2 cut(s)	198, 207
Hin1II	CATG	4 cut(s)	11, 161, 181, 206
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	148
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	2 cut(s)	119, 274
Hpy188III	TCNNGA	2 cut(s)	68, 257
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	3 cut(s)	93, 255, 259
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	3 cut(s)	179, 203, 206
HpyF3I	CTNAG	2 cut(s)	116, 273
Hsp92II	CATG	4 cut(s)	11, 161, 181, 206
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	2 cut(s)	33, 53
Lsp1109I	GCAGC	2 cut(s)	193, 209
MaeI	CTAG	1 cut(s)	162
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	177
MluCI	AATT	4 cut(s)	24, 82, 150, 191
MnlI	CCTC	5 cut(s)	64, 103, 125, 127, 163
MseI	TTAA	1 cut(s)	289
MwoI	GCNNNNNNNGC	3 cut(s)	179, 203, 206
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	4 cut(s)	11, 161, 181, 206
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	2 cut(s)	199, 208
PpuMI	RGGWCCY	1 cut(s)	112
Psp5II	RGGWCCY	1 cut(s)	112
PspPI	GGNCC	1 cut(s)	112
PspPPI	RGGWCCY	1 cut(s)	112
PstI	CTGCAG	1 cut(s)	211
SaqAI	TTAA	1 cut(s)	289
SatI	GCNGC	2 cut(s)	198, 207
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	1 cut(s)	112
SetI	ASST	6 cut(s)	78, 104, 117, 138, 202, 226
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	1 cut(s)	112
Sse9I	AATT	4 cut(s)	24, 82, 150, 191
SspI	AATATT	1 cut(s)	241
SspMI	CTAG	1 cut(s)	162
TasI	AATT	4 cut(s)	24, 82, 150, 191
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	1 cut(s)	289
Tru9I	TTAA	1 cut(s)	289
TseI	GCWGC	2 cut(s)	197, 206
TspDTI	ATGAA	2 cut(s)	146, 241
VpaK11BI	GGWCC	1 cut(s)	112
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.