Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006143

Physical Location & Seq

Genomic Coordinates Forward (+)

68956159 .. 68961473

Gene Structure 5315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG495500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGATGGTTAATCATGGTCTCTCTCTCTCTCTCTGCCCTTGTGTTTTTGGTTCACTTGAAAAGAAAGGACAGCTTGGAGTCTGGGATTTTCGCAAAGTATATGAGAAGGTTGTTTATGGAAATGTACACTCATGTATACTAAACAATATGAAGTTTAGCCCTGCAAGTGATGGTACAGTATATGCTGCATCCTCAGATGGAACTGTTAGTTGCACTGATGTCGAGACTGGAATTGCATTGTCTCTGATGAATCTCAACCCTGATGGTTGGCAGGGTCCAAGCACCTGGAGAATGCTGTATGGCATGGATATCAATGCAGAGAAAGGTGCCGTGCTTGTTGCTGATAACTTTGGTTTCTTCTACTTGGTTGATACTCGCTCAAATAACAGAACAGGGAAACCAATTTTGATCCATAAGAAAGGTAGCAAAGTTGTTGGACTTCACTGCAATCCTGTTCAACCAGACCTTCTCTTGAGTTGTGGAAATGATCATTTTGCTCGCATATGGGACATTCGTCGAATTGAAGATGGTTCCTCCATTTATGACCTTGCACACAGCCGTGTTGTTAACTCTGCGTATTTTTCTCCAGTATCTGGCAGTAAAATTCTTACCACTTCACAGGACAACCGTCTTTGTATATGGGATTCCATATTTGGCAATATGGATTCCCCAAGCCGAGAGATTGTACACAGTCATGATTTTAATCGGTATCTGACTCCTTTCCGAGCCGAATGGGATCCAAAGGACCCGTCAGAGTCACTTGCAGTTATTGGTCGTTATATTAGTGAAAACTATAATGGAGCTGCTCTGCATCCCATTGATTTCATAGACATCAGTACAGGGCAACTAGTTGCTGAGATCATGGATCCAAACATTACTACAATCACTCCAGTGAACAAGCTACATCCACGTGATGATGTTTTGGCATCTGGTAGTTCAAGGTCACTTTTCATTTGGCGGCCAAAGGAAAAGTGTGAGCCTGTGGAACAGATGGATGTAGGGAAGATTTTTGTTTGCGACAGAGATGATAAAAAGAGAAGAAAACGGAAGTTTGGGGGTGAAAGTGATGATTCTGATGATGACAAGTCCATCCCCAAGGGCAAGAGGTTTAAGTCCCAAAAGAAATCTCAGTCCAAGTCAAGTCTATCTGTTAAGGTCAGACGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0003674 GO:0003676 GO:0003677 GO:0003684 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009987 GO:0010224 GO:0031461 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0080008 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko03420 ko04115 ko04120 ko05161 ko05200 ko05202 ko05210 ko05212 ko05213 ko05214 ko05216 ko05217 ko05218 ko05220 ko05222 ko05223 ko05224 ko05225 ko05226 map03420 map04115 map04120 map05161 map05200 map05202 map05210 map05212 map05213 map05214 map05216 map05217 map05218 map05220 map05222 map05223 map05224 map05225 map05226

Pfam Domains

Protein Families

WD40

Protein Analysis

388

Amino Acids

43.38

Weight (kDa)

8.46

Isoelectric Point (pI)

38.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	46 - 219	1.6e-08	CDC20/Fizzy WD40 domain
Beta-prop_EIPR1	PF23609	111 - 214	1.2e-06	EIPR1 beta-propeller
Beta-prop_THOC3	PF25174	142 - 215	1.6e-06	THOC3 beta-propeller domain
Beta-prop_WDR5	PF25175	153 - 217	5.4e-06	WDR5 beta-propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006143)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G58760 AT5G58760
fragaria_vesca	FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500 FvH4_3g38500
malus_domestica	MD11G1075200.v1.1
prunus_persica	Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1 Prupe.6G058000_v2.0.a1
pyrus_communis	pycom03g05740 pycom11g06250
rosa_chinensis	RchiOBHm_Chr5g0069361
rosa_laevigata	RLG00000036049
rosa_multiflora	Rmu_sc0002658.1_g000007
rosa_roxburghii	Rroxscaffold_1G00011560
rosa_rugosa	Rorug05G0397300
rosa_samantha	Rh5AG453900 Rh5BG472900 Rh5CG495500 Rh5DG485300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	326
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	136
AciI	CCGC	1 cut(s)	958
AclWI	GGATC	5 cut(s)	403, 731, 744, 860, 873
AcoI	YGGCCR	1 cut(s)	959
AcsI	RAATTY	1 cut(s)	603
AcvI	CACGTG	1 cut(s)	911
AfaI	GTAC	4 cut(s)	126, 175, 687, 838
AfiI	CCNNNNNNNGG	1 cut(s)	593
AgsI	TTSAA	4 cut(s)	59, 458, 524, 939
AhlI	ACTAGT	1 cut(s)	847
AjnI	CCWGG	1 cut(s)	284
AleI	CACNNNNGTG	2 cut(s)	558, 890
AluBI	AGCT	3 cut(s)	73, 803, 901
AluI	AGCT	3 cut(s)	73, 803, 901
Alw26I	GTCTC	3 cut(s)	23, 218, 246
AlwI	GGATC	5 cut(s)	403, 731, 744, 860, 873
AlwNI	CAGNNNCTG	2 cut(s)	593, 1164
AoxI	GGCC	1 cut(s)	959
ApeKI	GCWGC	2 cut(s)	185, 803
ApoI	RAATTY	1 cut(s)	603
ArsI	GACNNNNNNTTYG	2 cut(s)	734, 766
AspS9I	GGNCC	2 cut(s)	275, 745
AsuHPI	GGTGA	1 cut(s)	1070
AvaII	GGWCC	2 cut(s)	275, 745
BamHI	GGATCC	2 cut(s)	736, 865
BanI	GGYRCC	1 cut(s)	326
BbrPI	CACGTG	1 cut(s)	911
BbvI	GCAGC	2 cut(s)	172, 790
BccI	CCATC	6 cut(s)	164, 191, 257, 521, 985, 1097
BceAI	ACGGC	2 cut(s)	314, 543
BcgI	CGANNNNNNTGC	2 cut(s)	202, 236
BciT130I	CCWGG	1 cut(s)	286
BclI	TGATCA	1 cut(s)	487
BcoDI	GTCTC	3 cut(s)	23, 218, 246
BcuI	ACTAGT	1 cut(s)	847
BfaI	CTAG	1 cut(s)	848
BisI	GCNGC	3 cut(s)	186, 804, 959
BlsI	GCNGC	3 cut(s)	187, 805, 960
Bme1390I	CCNGG	1 cut(s)	286
Bme18I	GGWCC	2 cut(s)	275, 745
BmgT120I	GGNCC	2 cut(s)	275, 745
BmiI	GGNNCC	6 cut(s)	276, 328, 532, 738, 747, 867
BmrFI	CCNGG	1 cut(s)	286
BmsI	GCATC	3 cut(s)	197, 820, 935
BoxI	GACNNNNGTC	2 cut(s)	513, 627
BpmI	CTGGAG	3 cut(s)	307, 570, 873
BpuEI	CTTGAG	1 cut(s)	493
BsaAI	YACGTR	1 cut(s)	911
BsaBI	GATNNNNATC	1 cut(s)	702
BsaI	GGTCTC	1 cut(s)	23
BsaJI	CCNNGG	1 cut(s)	1095
BsaXI	ACNNNNNCTCC	2 cut(s)	871, 901
Bsc4I	CCNNNNNNNGG	1 cut(s)	593
Bse1I	ACTGG	3 cut(s)	232, 587, 890
Bse8I	GATNNNNATC	1 cut(s)	702
BseBI	CCWGG	1 cut(s)	286
BseDI	CCNNGG	1 cut(s)	1095
BseGI	GGATG	5 cut(s)	188, 811, 904, 1000, 1089
BseJI	GATNNNNATC	1 cut(s)	702
BseLI	CCNNNNNNNGG	1 cut(s)	593
BseMII	CTCAG	3 cut(s)	207, 846, 1142
BseNI	ACTGG	3 cut(s)	232, 587, 890
BseXI	GCAGC	2 cut(s)	172, 790
BshFI	GGCC	1 cut(s)	961
BshNI	GGYRCC	1 cut(s)	326
BslFI	GGGAC	2 cut(s)	521, 1099
BslI	CCNNNNNNNGG	1 cut(s)	593
BsmAI	GTCTC	3 cut(s)	23, 218, 246
BsmFI	GGGAC	2 cut(s)	521, 1099
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	961
Bso31I	GGTCTC	1 cut(s)	23
Bsp1407I	TGTACA	2 cut(s)	124, 685
Bsp143I	GATC	5 cut(s)	408, 487, 736, 858, 865
BspACI	CCGC	1 cut(s)	958
BspANI	GGCC	1 cut(s)	961
BspCNI	CTCAG	3 cut(s)	206, 847, 1141
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	6 cut(s)	276, 328, 532, 738, 747, 867
BspPI	GGATC	5 cut(s)	403, 731, 744, 860, 873
BspT107I	GGYRCC	1 cut(s)	326
BspTNI	GGTCTC	1 cut(s)	23
BsrGI	TGTACA	2 cut(s)	124, 685
BsrI	ACTGG	3 cut(s)	232, 587, 890
BssECI	CCNNGG	1 cut(s)	1095
BssMI	GATC	5 cut(s)	408, 487, 736, 858, 865
BssNAI	GTATAC	1 cut(s)	137
BssT1I	CCWWGG	1 cut(s)	1095
Bst1107I	GTATAC	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	286
Bst4CI	ACNGT	4 cut(s)	178, 205, 629, 692
BstAUI	TGTACA	2 cut(s)	124, 685
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	1 cut(s)	499
BstDEI	CTNAG	3 cut(s)	193, 855, 1128
BstF5I	GGATG	5 cut(s)	188, 811, 904, 1000, 1089
BstKTI	GATC	5 cut(s)	411, 490, 739, 861, 868
BstMAI	GTCTC	3 cut(s)	23, 218, 246
BstMBI	GATC	5 cut(s)	408, 487, 736, 858, 865
BstNI	CCWGG	1 cut(s)	286
BstPAI	GACNNNNGTC	2 cut(s)	513, 627
BstSCI	CCNGG	1 cut(s)	284
BstV1I	GCAGC	2 cut(s)	172, 790
BstX2I	RGATCY	2 cut(s)	736, 865
BstXI	CCANNNNNNTGG	1 cut(s)	285
BstYI	RGATCY	2 cut(s)	736, 865
BstZ17I	GTATAC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	961
BtsCI	GGATG	5 cut(s)	188, 811, 904, 1000, 1089
BtsI	GCAGTG	1 cut(s)	442
BtsIMutI	CAGTG	3 cut(s)	213, 442, 897
Cac8I	GCNNGC	1 cut(s)	499
CaiI	CAGNNNCTG	2 cut(s)	593, 1164
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	2 cut(s)	275, 745
Csp6I	GTAC	4 cut(s)	125, 174, 686, 837
CviAII	CATG	5 cut(s)	14, 132, 304, 695, 862
CviJI	RGCY	9 cut(s)	73, 159, 558, 675, 728, 803, 901, 961, 979
CviKI_1	RGCY	9 cut(s)	73, 159, 558, 675, 728, 803, 901, 961, 979
CviQI	GTAC	4 cut(s)	125, 174, 686, 837
DdeI	CTNAG	3 cut(s)	193, 855, 1128
DpnI	GATC	5 cut(s)	410, 489, 738, 860, 867
DpnII	GATC	5 cut(s)	408, 487, 736, 858, 865
EaeI	YGGCCR	1 cut(s)	959
Eco130I	CCWWGG	1 cut(s)	1095
Eco31I	GGTCTC	1 cut(s)	23
Eco32I	GATATC	1 cut(s)	310
Eco47I	GGWCC	2 cut(s)	275, 745
Eco72I	CACGTG	1 cut(s)	911
EcoO109I	RGGNCCY	1 cut(s)	745
EcoRII	CCWGG	1 cut(s)	284
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	1095
ErhI	CCWWGG	1 cut(s)	1095
FaeI	CATG	5 cut(s)	17, 135, 307, 698, 865
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	2 cut(s)	521, 1099
FatI	CATG	5 cut(s)	13, 131, 303, 694, 861
FauNDI	CATATG	1 cut(s)	503
FbaI	TGATCA	1 cut(s)	487
FblI	GTMKAC	1 cut(s)	136
Fnu4HI	GCNGC	3 cut(s)	186, 804, 959
FokI	GGATG	5 cut(s)	175, 798, 891, 1007, 1076
Fsp4HI	GCNGC	3 cut(s)	186, 804, 959
FspBI	CTAG	1 cut(s)	848
GluI	GCNGC	3 cut(s)	186, 804, 959
GsuI	CTGGAG	3 cut(s)	307, 570, 873
HaeIII	GGCC	1 cut(s)	961
Hin1II	CATG	5 cut(s)	17, 135, 307, 698, 865
HincII	GTYRAC	1 cut(s)	568
HindII	GTYRAC	1 cut(s)	568
HinfI	GANTC	7 cut(s)	78, 250, 644, 665, 715, 755, 1070
HpaI	GTTAAC	1 cut(s)	568
HphI	GGTGA	1 cut(s)	1070
Hpy166II	GTNNAC	6 cut(s)	53, 127, 137, 568, 688, 895
Hpy188I	TCNGA	7 cut(s)	196, 246, 714, 725, 754, 1075, 1160
Hpy188III	TCNNGA	3 cut(s)	223, 472, 695
Hpy8I	GTNNAC	6 cut(s)	53, 127, 137, 568, 688, 895
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	2 cut(s)	100, 476
HpyCH4III	ACNGT	4 cut(s)	178, 205, 629, 692
HpyCH4IV	ACGT	1 cut(s)	910
HpyCH4V	TGCA	9 cut(s)	164, 188, 213, 236, 317, 447, 551, 764, 811
HpyF3I	CTNAG	3 cut(s)	193, 855, 1128
HpySE526I	ACGT	1 cut(s)	910
Hsp92II	CATG	5 cut(s)	17, 135, 307, 698, 865
Ksp22I	TGATCA	1 cut(s)	487
KspAI	GTTAAC	1 cut(s)	568
Kzo9I	GATC	5 cut(s)	408, 487, 736, 858, 865
LmnI	GCTCC	1 cut(s)	800
Lsp1109I	GCAGC	2 cut(s)	172, 790
LweI	GCATC	3 cut(s)	197, 820, 935
MaeI	CTAG	1 cut(s)	848
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	2 cut(s)	756, 942
MalI	GATC	5 cut(s)	410, 489, 738, 860, 867
MboI	GATC	5 cut(s)	408, 487, 736, 858, 865
MboII	GAAGA	4 cut(s)	349, 536, 1015, 1050
MflI	RGATCY	2 cut(s)	736, 865
MluCI	AATT	4 cut(s)	231, 402, 519, 603
MlyI	GAGTC	3 cut(s)	87, 709, 764
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	3 cut(s)	202, 544, 1098
MseI	TTAA	5 cut(s)	9, 567, 702, 1110, 1152
MslI	CAYNNNNRTG	4 cut(s)	558, 693, 890, 909
MspR9I	CCNGG	1 cut(s)	286
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	286
NdeI	CATATG	1 cut(s)	503
NdeII	GATC	5 cut(s)	408, 487, 736, 858, 865
NlaIII	CATG	5 cut(s)	17, 135, 307, 698, 865
NlaIV	GGNNCC	6 cut(s)	276, 328, 532, 738, 747, 867
NmeAIII	GCCGAG	1 cut(s)	701
NmuCI	GTSAC	2 cut(s)	756, 942
OliI	CACNNNNGTG	2 cut(s)	558, 890
PagI	TCATGA	1 cut(s)	694
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	4 cut(s)	250, 644, 665, 1070
PflMI	CCANNNNNTGG	1 cut(s)	593
PkrI	GCNGC	3 cut(s)	187, 805, 960
PleI	GAGTC	3 cut(s)	86, 709, 763
PmaCI	CACGTG	1 cut(s)	911
PmlI	CACGTG	1 cut(s)	911
PpsI	GAGTC	3 cut(s)	86, 709, 763
Ppu21I	YACGTR	1 cut(s)	911
PpuMI	RGGWCCY	1 cut(s)	745
PshAI	GACNNNNGTC	2 cut(s)	513, 627
Psp5II	RGGWCCY	1 cut(s)	745
Psp6I	CCWGG	1 cut(s)	284
PspCI	CACGTG	1 cut(s)	911
PspGI	CCWGG	1 cut(s)	284
PspN4I	GGNNCC	6 cut(s)	276, 328, 532, 738, 747, 867
PspPI	GGNCC	2 cut(s)	275, 745
PspPPI	RGGWCCY	1 cut(s)	745
PstNI	CAGNNNCTG	2 cut(s)	593, 1164
PsuI	RGATCY	2 cut(s)	736, 865
RsaI	GTAC	4 cut(s)	126, 175, 687, 838
RsaNI	GTAC	4 cut(s)	125, 174, 686, 837
RseI	CAYNNNNRTG	4 cut(s)	558, 693, 890, 909
SaqAI	TTAA	5 cut(s)	9, 567, 702, 1110, 1152
SatI	GCNGC	3 cut(s)	186, 804, 959
Sau3AI	GATC	5 cut(s)	408, 487, 736, 858, 865
Sau96I	GGNCC	2 cut(s)	275, 745
SchI	GAGTC	3 cut(s)	87, 709, 764
ScrFI	CCNGG	1 cut(s)	286
SfaNI	GCATC	3 cut(s)	197, 820, 935
SinI	GGWCC	2 cut(s)	275, 745
SmiMI	CAYNNNNRTG	4 cut(s)	558, 693, 890, 909
SmlI	CTYRAG	1 cut(s)	472
SmoI	CTYRAG	1 cut(s)	472
SpeI	ACTAGT	1 cut(s)	847
Sse9I	AATT	4 cut(s)	231, 402, 519, 603
SsiI	CCGC	1 cut(s)	958
SspMI	CTAG	1 cut(s)	848
StyD4I	CCNGG	1 cut(s)	284
StyI	CCWWGG	1 cut(s)	1095
TaaI	ACNGT	4 cut(s)	178, 205, 629, 692
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	2 cut(s)	222, 517
TasI	AATT	4 cut(s)	231, 402, 519, 603
TatI	WGTACW	3 cut(s)	124, 685, 836
TauI	GCSGC	1 cut(s)	961
TfiI	GAWTC	4 cut(s)	250, 644, 665, 1070
Tru1I	TTAA	5 cut(s)	9, 567, 702, 1110, 1152
Tru9I	TTAA	5 cut(s)	9, 567, 702, 1110, 1152
TscAI	CASTG	3 cut(s)	220, 449, 897
TseFI	GTSAC	2 cut(s)	756, 942
TseI	GCWGC	2 cut(s)	185, 803
Tsp45I	GTSAC	2 cut(s)	756, 942
TspDTI	ATGAA	4 cut(s)	164, 263, 814, 940
TspGWI	ACGGA	1 cut(s)	1060
TspRI	CASTG	3 cut(s)	220, 449, 897
Van91I	CCANNNNNTGG	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	275, 745
XapI	RAATTY	1 cut(s)	603
XmiI	GTMKAC	1 cut(s)	136
XspI	CTAG	1 cut(s)	848

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.