Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Forward (+)

4881772 .. 4882915

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g06180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGAGGCAAGTGGCACAAGCAACATGAAATTTGCTCTGAACGGTTGCCTCATAATCGGCACACTGGATGGGGCTAATGTGGAAATCCGTGAGGAAATTGGGGAGGACAACTTTTTTCTCTTTGGTGCAACAGCTGATGAAGTCCCTAAGCTGCGCAAGGACAGAGAGAACGGCCTGTTCAAACCCGATCCTCGGTTTGAAGAAGCCAAGCAGTTTGTTAGGAGTGGAGCATTTGGGAGCTACGATTACAATCCACTTCTTGACTCTCTGGAGGGGAACACTGGTTATGGTCGTGGTGATTATTTTCTTGTTGGCCATGACTTCGCACAGTATATGGATGCTCAGGCAAAAGTAGATGAAGCTTACAAGGATAGGAAAAGGTGGCTGAAGATGTCCATACTAAGCACTGCAGGGTCTGGCAAGTTCAGCAGCGACCGGACAATTGCTCAGTACGCCAAGGAAATCTGGAACATAGAGGAGTGCCGCGTACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009414 GO:0009415 GO:0009507 GO:0009536 GO:0009628 GO:0009987 GO:0010035 GO:0010038 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046686 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

165

Amino Acids

18.45

Weight (kDa)

4.92

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	1 - 158	5.5e-56	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	155
AccII	CGCG	1 cut(s)	486
AciI	CCGC	1 cut(s)	484
AclWI	GGATC	1 cut(s)	182
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	407
AfaI	GTAC	2 cut(s)	452, 489
AfiI	CCNNNNNNNGG	1 cut(s)	192
AgsI	TTSAA	2 cut(s)	181, 200
AluBI	AGCT	4 cut(s)	134, 151, 240, 362
AluI	AGCT	4 cut(s)	134, 151, 240, 362
AlwI	GGATC	1 cut(s)	182
AlwNI	CAGNNNCTG	1 cut(s)	416
AoxI	GGCC	2 cut(s)	172, 313
ApeKI	GCWGC	2 cut(s)	151, 429
ApoI	RAATTY	1 cut(s)	29
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	308
BalI	TGGCCA	1 cut(s)	315
BbvI	GCAGC	2 cut(s)	138, 441
BccI	CCATC	1 cut(s)	62
BceAI	ACGGC	1 cut(s)	187
BfmI	CTRYAG	1 cut(s)	408
BisI	GCNGC	3 cut(s)	152, 430, 484
BlsI	GCNGC	3 cut(s)	153, 431, 485
BmsI	GCATC	1 cut(s)	328
BpmI	CTGGAG	1 cut(s)	290
Bpu10I	CCTNAGC	2 cut(s)	147, 342
BsaBI	GATNNNNATC	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	191, 456
BsaWI	WCCGGW	1 cut(s)	435
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	2 cut(s)	69, 286
Bse8I	GATNNNNATC	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	191, 456
BseGI	GGATG	2 cut(s)	73, 343
BseJI	GATNNNNATC	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	356, 461
BseNI	ACTGG	2 cut(s)	69, 286
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	2 cut(s)	138, 441
Bsh1236I	CGCG	1 cut(s)	486
Bsh1285I	CGRYCG	1 cut(s)	436
BshFI	GGCC	2 cut(s)	174, 315
BsiEI	CGRYCG	1 cut(s)	436
BsiSI	CCGG	1 cut(s)	436
BslFI	GGGAC	1 cut(s)	128
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	128
BsnI	GGCC	2 cut(s)	174, 315
Bsp143I	GATC	1 cut(s)	187
BspACI	CCGC	1 cut(s)	484
BspANI	GGCC	2 cut(s)	174, 315
BspCNI	CTCAG	2 cut(s)	355, 460
BspFNI	CGCG	1 cut(s)	486
BspMAI	CTGCAG	1 cut(s)	412
BspPI	GGATC	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	69, 286
BssECI	CCNNGG	2 cut(s)	191, 456
BssMI	GATC	1 cut(s)	187
BssT1I	CCWWGG	1 cut(s)	456
Bst4CI	ACNGT	2 cut(s)	44, 330
BstDEI	CTNAG	4 cut(s)	147, 342, 401, 447
BstF5I	GGATG	2 cut(s)	73, 343
BstFNI	CGCG	1 cut(s)	486
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	190
BstMBI	GATC	1 cut(s)	187
BstMCI	CGRYCG	1 cut(s)	436
BstMWI	GCNNNNNNNGC	2 cut(s)	426, 452
BstSFI	CTRYAG	1 cut(s)	408
BstUI	CGCG	1 cut(s)	486
BstV1I	GCAGC	2 cut(s)	138, 441
BsuRI	GGCC	2 cut(s)	174, 315
BtsCI	GGATG	2 cut(s)	73, 343
BtsI	GCAGTG	1 cut(s)	405
BtsIMutI	CAGTG	3 cut(s)	62, 279, 405
CaiI	CAGNNNCTG	1 cut(s)	416
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	2 cut(s)	451, 488
CviAII	CATG	2 cut(s)	25, 317
CviJI	RGCY	9 cut(s)	74, 134, 151, 174, 206, 240, 315, 362, 385
CviKI_1	RGCY	9 cut(s)	74, 134, 151, 174, 206, 240, 315, 362, 385
CviQI	GTAC	2 cut(s)	451, 488
DdeI	CTNAG	4 cut(s)	147, 342, 401, 447
DpnI	GATC	1 cut(s)	189
DpnII	GATC	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	456
Eco57I	CTGAAG	1 cut(s)	407
EcoT14I	CCWWGG	1 cut(s)	456
ErhI	CCWWGG	1 cut(s)	456
FaeI	CATG	2 cut(s)	28, 320
FaiI	YATR	9 cut(s)	26, 53, 288, 318, 333, 335, 398, 473, 493
FaqI	GGGAC	1 cut(s)	128
FatI	CATG	2 cut(s)	24, 316
Fnu4HI	GCNGC	3 cut(s)	152, 430, 484
FokI	GGATG	2 cut(s)	80, 350
Fsp4HI	GCNGC	3 cut(s)	152, 430, 484
FspI	TGCGCA	1 cut(s)	155
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	3 cut(s)	152, 430, 484
GsuI	CTGGAG	1 cut(s)	290
HaeIII	GGCC	2 cut(s)	174, 315
HapII	CCGG	1 cut(s)	436
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	28, 320
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	360
HinfI	GANTC	1 cut(s)	263
HpaII	CCGG	1 cut(s)	436
HphI	GGTGA	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	3 cut(s)	260, 269, 466
HpyCH4III	ACNGT	2 cut(s)	44, 330
HpyCH4V	TGCA	2 cut(s)	128, 410
HpyF10VI	GCNNNNNNNGC	2 cut(s)	426, 452
HpyF3I	CTNAG	4 cut(s)	147, 342, 401, 447
Hsp92II	CATG	2 cut(s)	28, 320
HspAI	GCGC	1 cut(s)	154
Kzo9I	GATC	1 cut(s)	187
LmnI	GCTCC	2 cut(s)	227, 237
LpnPI	CCDG	9 cut(s)	50, 188, 254, 267, 329, 396, 402, 449, 451
Lsp1109I	GCAGC	2 cut(s)	138, 441
LweI	GCATC	1 cut(s)	328
MalI	GATC	1 cut(s)	189
MboI	GATC	1 cut(s)	187
MboII	GAAGA	2 cut(s)	212, 400
MfeI	CAATTG	1 cut(s)	441
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	3 cut(s)	29, 96, 441
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	1 cut(s)	257
MnlI	CCTC	6 cut(s)	59, 85, 97, 201, 265, 469
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
Msp20I	TGGCCA	1 cut(s)	315
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	436
MunI	CAATTG	1 cut(s)	441
MvnI	CGCG	1 cut(s)	486
MwoI	GCNNNNNNNGC	2 cut(s)	426, 452
NdeII	GATC	1 cut(s)	187
NlaIII	CATG	2 cut(s)	28, 320
NsbI	TGCGCA	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	153, 431, 485
PleI	GAGTC	1 cut(s)	257
PpsI	GAGTC	1 cut(s)	257
PstI	CTGCAG	1 cut(s)	412
PstNI	CAGNNNCTG	1 cut(s)	416
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	452, 489
RsaNI	GTAC	2 cut(s)	451, 488
SatI	GCNGC	3 cut(s)	152, 430, 484
Sau3AI	GATC	1 cut(s)	187
SchI	GAGTC	1 cut(s)	257
SetI	ASST	5 cut(s)	136, 153, 242, 364, 383
SfaNI	GCATC	1 cut(s)	328
SfcI	CTRYAG	1 cut(s)	408
Sse9I	AATT	3 cut(s)	29, 96, 441
SsiI	CCGC	1 cut(s)	484
StyI	CCWWGG	1 cut(s)	456
TaaI	ACNGT	2 cut(s)	44, 330
TasI	AATT	3 cut(s)	29, 96, 441
TauI	GCSGC	1 cut(s)	486
TscAI	CASTG	3 cut(s)	69, 286, 412
TseI	GCWGC	2 cut(s)	151, 429
TspDTI	ATGAA	3 cut(s)	41, 153, 372
TspGWI	ACGGA	1 cut(s)	77
TspRI	CASTG	3 cut(s)	69, 286, 412
XapI	RAATTY	1 cut(s)	29

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.