Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Forward (+)

63099300 .. 63101463

Gene Structure 2164 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ59946

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTCGTATCAGGTTATCTTCGTACCTGATTATAATGTCAGTGTTGCTGAATTATTAATTCCTGCGAGTGAGCTCTCACAGCACATCAGTACTGCTGGCATGGAGGCCAGTGGCACCAGCAACATGAAGTTTGCAATGAATGGCTGCATCCTAATTGGGACTCTGGATGGAGCCAATGTTGAAATAAGAGAGGAGGTTGGAGTAGATAGCTTTTTCCTCTTTGGTGCTGAAGCTCATGAGATTGCTGGGCTGAGAAAAGAACGAGCTGAAGGGAAGTTTGTTCCAGACCCCCGTTTTGAAGAAGTCAAGGAATTTGTCAGAAGTGGCGTTTTTGGGTCGTACAATTATGATGACCTGATCGGATCCAGAACAAGGTTTGTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

128

Amino Acids

14.09

Weight (kDa)

4.67

Isoelectric Point (pI)

33.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	4 - 115	1.3e-42	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	33
AccB1I	GGYRCC	1 cut(s)	113
AclWI	GGATC	2 cut(s)	357, 370
AcsI	RAATTY	1 cut(s)	311
AcuI	CTGAAG	2 cut(s)	249, 288
AfaI	GTAC	3 cut(s)	24, 91, 341
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	2 cut(s)	182, 299
AluBI	AGCT	4 cut(s)	73, 210, 233, 266
AluI	AGCT	4 cut(s)	73, 210, 233, 266
Alw21I	GWGCWC	1 cut(s)	75
AlwI	GGATC	2 cut(s)	357, 370
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	1 cut(s)	144
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AseI	ATTAAT	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	362
BanI	GGYRCC	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	75
Bbv12I	GWGCWC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	145
BlsI	GCNGC	1 cut(s)	146
BmcAI	AGTACT	1 cut(s)	91
BmiI	GGNNCC	3 cut(s)	115, 172, 364
BmsI	GCATC	1 cut(s)	156
BsaXI	ACNNNNNCTCC	2 cut(s)	162, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse1I	ACTGG	1 cut(s)	108
Bse3DI	GCAATG	1 cut(s)	141
BseGI	GGATG	2 cut(s)	147, 172
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	242
BseNI	ACTGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	206
BseXI	GCAGC	1 cut(s)	131
BseYI	CCCAGC	1 cut(s)	245
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	113
BsiHKAI	GWGCWC	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	357, 362
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	243
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	115, 172, 364
BspPI	GGATC	2 cut(s)	357, 370
BspT107I	GGYRCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	108
BssMI	GATC	2 cut(s)	357, 362
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	251
BstF5I	GGATG	2 cut(s)	147, 172
BstKTI	GATC	2 cut(s)	360, 365
BstMBI	GATC	2 cut(s)	357, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	79
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	147, 172
BtsIMutI	CAGTG	2 cut(s)	46, 115
Cac8I	GCNNGC	1 cut(s)	97
CciI	TCATGA	1 cut(s)	235
Csp6I	GTAC	3 cut(s)	23, 90, 340
CviAII	CATG	3 cut(s)	100, 124, 236
CviJI	RGCY	8 cut(s)	73, 107, 144, 173, 210, 233, 250, 266
CviKI_1	RGCY	8 cut(s)	73, 107, 144, 173, 210, 233, 250, 266
CviQI	GTAC	3 cut(s)	23, 90, 340
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	2 cut(s)	359, 364
DpnII	GATC	2 cut(s)	357, 362
Ecl136II	GAGCTC	1 cut(s)	73
Eco24I	GRGCYC	1 cut(s)	75
Eco53kI	GAGCTC	1 cut(s)	73
Eco57I	CTGAAG	2 cut(s)	249, 288
EcoICRI	GAGCTC	1 cut(s)	73
EcoT38I	GRGCYC	1 cut(s)	75
FaeI	CATG	3 cut(s)	103, 127, 239
FaiI	YATR	5 cut(s)	33, 101, 125, 237, 348
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	3 cut(s)	99, 123, 235
Fnu4HI	GCNGC	1 cut(s)	145
FokI	GGATG	2 cut(s)	134, 179
FriOI	GRGCYC	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	145
GluI	GCNGC	1 cut(s)	145
GsaI	CCCAGC	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	107
Hin1II	CATG	3 cut(s)	103, 127, 239
HinfI	GANTC	1 cut(s)	160
Hpy188I	TCNGA	2 cut(s)	320, 362
Hpy188III	TCNNGA	4 cut(s)	164, 236, 284, 366
HpyAV	CCTTC	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	134, 147
HpyF10VI	GCNNNNNNNGC	1 cut(s)	79
HpyF3I	CTNAG	1 cut(s)	251
Hsp92II	CATG	3 cut(s)	103, 127, 239
Kzo9I	GATC	2 cut(s)	357, 362
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	1 cut(s)	156
MalI	GATC	2 cut(s)	359, 364
MboI	GATC	2 cut(s)	357, 362
MboII	GAAGA	2 cut(s)	10, 311
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	1 cut(s)	75
MluCI	AATT	5 cut(s)	50, 57, 153, 311, 343
MlyI	GAGTC	1 cut(s)	154
MmeI	TCCRAC	1 cut(s)	178
MnlI	CCTC	4 cut(s)	97, 184, 187, 227
MseI	TTAA	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	79
NdeII	GATC	2 cut(s)	357, 362
NlaIII	CATG	3 cut(s)	103, 127, 239
NlaIV	GGNNCC	3 cut(s)	115, 172, 364
PagI	TCATGA	1 cut(s)	235
PkrI	GCNGC	1 cut(s)	146
PleI	GAGTC	1 cut(s)	154
PpsI	GAGTC	1 cut(s)	154
PshBI	ATTAAT	1 cut(s)	56
PsiI	TTATAA	1 cut(s)	33
Psp124BI	GAGCTC	1 cut(s)	75
PspFI	CCCAGC	1 cut(s)	245
PspN4I	GGNNCC	3 cut(s)	115, 172, 364
PsuI	RGATCY	1 cut(s)	362
RsaI	GTAC	3 cut(s)	24, 91, 341
RsaNI	GTAC	3 cut(s)	23, 90, 340
SacI	GAGCTC	1 cut(s)	75
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	1 cut(s)	145
Sau3AI	GATC	2 cut(s)	357, 362
ScaI	AGTACT	1 cut(s)	91
SchI	GAGTC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	75
SetI	ASST	9 cut(s)	15, 28, 75, 198, 212, 235, 268, 357, 377
SfaNI	GCATC	1 cut(s)	156
Sse9I	AATT	5 cut(s)	50, 57, 153, 311, 343
SstI	GAGCTC	1 cut(s)	75
TasI	AATT	5 cut(s)	50, 57, 153, 311, 343
TatI	WGTACW	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	2 cut(s)	46, 115
TseI	GCWGC	1 cut(s)	144
TspDTI	ATGAA	2 cut(s)	140, 152
TspRI	CASTG	2 cut(s)	46, 115
VspI	ATTAAT	1 cut(s)	56
XapI	RAATTY	1 cut(s)	311
ZrmI	AGTACT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.