Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Reverse (-)

45421079 .. 45423982

Gene Structure 2904 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00031980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCTCCACTGCGCCTACGGCGCCGTCGAGAAGTCGATTGAGGCCTACGTCACTCGCGCCGGCGGGCACGTCATTGAGGTGAAGCGCATTCATGAATACAAGAGACAACTTATGAATATTTTGGGAATTGTTTACCGGTACAAGAAAATGAAAGAAATGAGTGCTTCACAAAGGAAAACAAAGTTTGTTCCACGTGTTTGTATGTTCGGAGGAAAAGCATTTGCAATATATGTTCGGGTACTTGGTGCATTTTACTTGCGTATCACGGGCAGCGATACCGATGTCTACCAGTACCTAGAGCCTCCGTACAATGACTATTGGAAGTTGAGAAGTAAATTGGCTGATGGACATTCCACCTATCTATATGTTCTAATTGCATCTGGTCCTTTCTACTTATGTTTTATGCCACCTTCATACTCCTATCCCAGGTCTCTAAGAGGATCTATTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

150

Amino Acids

17.37

Weight (kDa)

9.66

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	24 - 78	1.7e-15	Carbohydrate phosphorylase
PRP38	PF03371	72 - 116	7.4e-11	PRP38 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	20
AccI	GTMKAC	1 cut(s)	285
AccII	CGCG	1 cut(s)	57
AciI	CCGC	1 cut(s)	63
AclWI	GGATC	1 cut(s)	448
AcvI	CACGTG	1 cut(s)	194
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	4 cut(s)	140, 240, 293, 308
AfiI	CCNNNNNNNGG	1 cut(s)	426
AflIII	ACRYGT	1 cut(s)	193
AgeI	ACCGGT	1 cut(s)	135
AjiI	CACGTC	1 cut(s)	70
AjnI	CCWGG	1 cut(s)	425
Alw26I	GTCTC	2 cut(s)	97, 435
AlwI	GGATC	1 cut(s)	448
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	1 cut(s)	270
AsiGI	ACCGGT	1 cut(s)	135
AspLEI	GCGC	4 cut(s)	14, 23, 59, 87
AspS9I	GGNCC	1 cut(s)	383
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	383
BaeGI	GKGCMC	1 cut(s)	69
BaeI	ACNNNNGTAYC	4 cut(s)	244, 267, 277, 300
BanI	GGYRCC	1 cut(s)	20
BbrPI	CACGTG	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	282
BccI	CCATC	1 cut(s)	338
BceAI	ACGGC	2 cut(s)	8, 34
BciT130I	CCWGG	1 cut(s)	427
BcoDI	GTCTC	2 cut(s)	97, 435
BfaI	CTAG	1 cut(s)	296
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	427
Bme18I	GGWCC	1 cut(s)	383
BmgBI	CACGTC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	383
BmiI	GGNNCC	1 cut(s)	22
BmrFI	CCNGG	1 cut(s)	427
BmsI	GCATC	1 cut(s)	386
BsaAI	YACGTR	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	435
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	1 cut(s)	426
Bse118I	RCCGGY	2 cut(s)	59, 135
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	425
BseLI	CCNNNNNNNGG	1 cut(s)	426
BseNI	ACTGG	1 cut(s)	289
BseSI	GKGCMC	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	57
BshFI	GGCC	1 cut(s)	44
BshNI	GGYRCC	1 cut(s)	20
BshTI	ACCGGT	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	60, 136
BslI	CCNNNNNNNGG	1 cut(s)	426
BsmAI	GTCTC	2 cut(s)	97, 435
BsmI	GAATGC	1 cut(s)	87
BsnI	GGCC	1 cut(s)	44
Bso31I	GGTCTC	1 cut(s)	435
Bsp1286I	GDGCHC	1 cut(s)	69
Bsp143I	GATC	1 cut(s)	440
BspACI	CCGC	1 cut(s)	63
BspANI	GGCC	1 cut(s)	44
BspFNI	CGCG	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	91
BspLI	GGNNCC	1 cut(s)	22
BspPI	GGATC	1 cut(s)	448
BspT107I	GGYRCC	1 cut(s)	20
BspTNI	GGTCTC	1 cut(s)	435
BsrFI	RCCGGY	2 cut(s)	59, 135
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	2 cut(s)	59, 135
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	1 cut(s)	440
BssNI	GRCGYC	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	427
BstACI	GRCGYC	1 cut(s)	21
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	2 cut(s)	61, 65
BstDEI	CTNAG	1 cut(s)	434
BstENI	CCTNNNNNAGG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	57
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	4 cut(s)	14, 23, 59, 87
BstKTI	GATC	1 cut(s)	443
BstMAI	GTCTC	2 cut(s)	97, 435
BstMBI	GATC	1 cut(s)	440
BstMWI	GCNNNNNNNGC	2 cut(s)	18, 20
BstNI	CCWGG	1 cut(s)	427
BstSCI	CCNGG	1 cut(s)	425
BstSLI	GKGCMC	1 cut(s)	69
BstUI	CGCG	1 cut(s)	57
BstV1I	GCAGC	1 cut(s)	282
BstX2I	RGATCY	1 cut(s)	440
BstYI	RGATCY	1 cut(s)	440
BsuRI	GGCC	1 cut(s)	44
BtrI	CACGTC	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	7
BtsIMutI	CAGTG	1 cut(s)	7
Cac8I	GCNNGC	2 cut(s)	61, 65
CciI	TCATGA	1 cut(s)	91
CfoI	GCGC	4 cut(s)	14, 23, 59, 87
Cfr10I	RCCGGY	2 cut(s)	59, 135
Cfr13I	GGNCC	1 cut(s)	383
Csp6I	GTAC	4 cut(s)	139, 239, 292, 307
CspAI	ACCGGT	1 cut(s)	135
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	3 cut(s)	44, 301, 341
CviKI_1	RGCY	3 cut(s)	44, 301, 341
CviQI	GTAC	4 cut(s)	139, 239, 292, 307
DdeI	CTNAG	1 cut(s)	434
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	442
DpnII	GATC	1 cut(s)	440
Eco147I	AGGCCT	1 cut(s)	44
Eco31I	GGTCTC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	383
Eco72I	CACGTG	1 cut(s)	194
EcoNI	CCTNNNNNAGG	1 cut(s)	424
EcoRII	CCWGG	1 cut(s)	425
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	1 cut(s)	95
FatI	CATG	1 cut(s)	91
FauI	CCCGC	1 cut(s)	56
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	271
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	296
GlaI	GCGC	4 cut(s)	13, 22, 58, 86
GluI	GCNGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	60, 136
HhaI	GCGC	4 cut(s)	14, 23, 59, 87
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	4 cut(s)	12, 21, 57, 85
HinP1I	GCGC	4 cut(s)	12, 21, 57, 85
HpaII	CCGG	2 cut(s)	60, 136
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	133, 286
Hpy188I	TCNGA	1 cut(s)	209
Hpy188III	TCNNGA	2 cut(s)	28, 92
Hpy8I	GTNNAC	2 cut(s)	133, 286
Hpy99I	CGWCG	1 cut(s)	29
HpyAV	CCTTC	1 cut(s)	420
HpyCH4IV	ACGT	3 cut(s)	48, 69, 193
HpyCH4V	TGCA	3 cut(s)	224, 248, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	18, 20
HpyF3I	CTNAG	1 cut(s)	434
HpySE526I	ACGT	3 cut(s)	48, 69, 193
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	4 cut(s)	12, 21, 57, 85
KasI	GGCGCC	1 cut(s)	20
KroI	GCCGGC	1 cut(s)	59
KroNI	GCCGGC	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	440
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	6 cut(s)	73, 149, 302, 366, 412, 439
Lsp1109I	GCAGC	1 cut(s)	282
LweI	GCATC	1 cut(s)	386
MaeI	CTAG	1 cut(s)	296
MaeII	ACGT	3 cut(s)	48, 69, 193
MaeIII	GTNAC	1 cut(s)	49
MalI	GATC	1 cut(s)	442
MboI	GATC	1 cut(s)	440
MflI	RGATCY	1 cut(s)	440
MhlI	GDGCHC	1 cut(s)	69
MluCI	AATT	3 cut(s)	126, 335, 372
Mly113I	GGCGCC	1 cut(s)	21
MnlI	CCTC	5 cut(s)	34, 70, 203, 312, 431
MreI	CGCCGGCG	1 cut(s)	59
MroNI	GCCGGC	1 cut(s)	59
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	2 cut(s)	60, 136
MspR9I	CCNGG	1 cut(s)	427
Mva1269I	GAATGC	1 cut(s)	87
MvaI	CCWGG	1 cut(s)	427
MvnI	CGCG	1 cut(s)	57
MwoI	GCNNNNNNNGC	2 cut(s)	18, 20
NaeI	GCCGGC	1 cut(s)	61
NarI	GGCGCC	1 cut(s)	21
NdeII	GATC	1 cut(s)	440
NgoMIV	GCCGGC	1 cut(s)	59
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	22
NmuCI	GTSAC	1 cut(s)	49
PagI	TCATGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PctI	GAATGC	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	61
PinAI	ACCGGT	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	272
PluTI	GGCGCC	1 cut(s)	24
PmaCI	CACGTG	1 cut(s)	194
PmlI	CACGTG	1 cut(s)	194
Ppu21I	YACGTR	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	425
PspCI	CACGTG	1 cut(s)	194
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	383
PsuI	RGATCY	1 cut(s)	440
RsaI	GTAC	4 cut(s)	140, 240, 293, 308
RsaNI	GTAC	4 cut(s)	139, 239, 292, 307
RseI	CAYNNNNRTG	1 cut(s)	77
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	1 cut(s)	440
Sau96I	GGNCC	1 cut(s)	383
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	69
SetI	ASST	8 cut(s)	51, 72, 81, 196, 297, 359, 412, 431
SfaNI	GCATC	1 cut(s)	386
SfoI	GGCGCC	1 cut(s)	22
SgrAI	CRCCGGYG	1 cut(s)	59
SinI	GGWCC	1 cut(s)	383
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	3 cut(s)	126, 335, 372
SseBI	AGGCCT	1 cut(s)	44
SsiI	CCGC	1 cut(s)	63
SspDI	GGCGCC	1 cut(s)	20
SspI	AATATT	1 cut(s)	118
SspMI	CTAG	1 cut(s)	296
StuI	AGGCCT	1 cut(s)	44
StyD4I	CCNGG	1 cut(s)	425
TaiI	ACGT	3 cut(s)	51, 72, 196
TaqI	TCGA	2 cut(s)	27, 35
TasI	AATT	3 cut(s)	126, 335, 372
TscAI	CASTG	1 cut(s)	14
TseFI	GTSAC	1 cut(s)	49
TseI	GCWGC	1 cut(s)	270
Tsp45I	GTSAC	1 cut(s)	49
TspDTI	ATGAA	5 cut(s)	80, 108, 128, 164, 402
TspGWI	ACGGA	1 cut(s)	294
TspRI	CASTG	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	383
XagI	CCTNNNNNAGG	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	285
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.