Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0016958

Physical Location & Seq

Genomic Coordinates Forward (+)

4019055 .. 4020055

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g05660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGAAGTTTGCAATGAACGGCTGCATCCTAATCGGGACTCTGGATGGTGCCAATGTTGAAATAAGAGAAGAGGTTGGAGAAGACAACTTTTTCCTATTTGGTGCTGAAGCTCATGAGATTGCTGGGCTGAGAAAAGAACGAGCCGAGGGGAAGTTTGTTCCAGACCCACGTTTTGAAGAAGTCAAGGAATTCGTCAAAAGCGGTGTTTTTGGGTCAGACAATTATGACGAACTGATTGGATCCCTGGAAGGAAATGAAGGATTTGGCCGTGCAGATTATTTCCTCGTCGGCAAGGACTTCCCCAGTTACATAGAATGCCAAGAGAAGGTTGATGAGGCATATCGAGACCAAAAGAGATGGACGAGAATGTCGATCCTGAACACAGCAGGCTCGTACAAGTTTAGCAGTGACAGAACCATTCACGAATATGCTAATGACATATGGAACATCAACCCCGTCGAGTTGCCAGATCCTCGGCTTTTATTGTTCCCTCTCTCTCTCTCCTTCTCATGCAAAGCACGAAGACAAGTTGTAAGAGGGAAAATGTACTGGAGCAAAACAAATGAGTTAGCTCTCGTTTGGCACACCGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000272 GO:0001101 GO:0003674 GO:0003824 GO:0004645 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005975 GO:0005976 GO:0005977 GO:0005980 GO:0006073 GO:0006091 GO:0006112 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0008184 GO:0009056 GO:0009057 GO:0009251 GO:0009266 GO:0009414 GO:0009415 GO:0009501 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009987 GO:0010035 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0019842 GO:0030170 GO:0036094 GO:0042221 GO:0042802 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048037 GO:0050662 GO:0050896 GO:0055114 GO:0070279 GO:0071704 GO:0097159 GO:1901363 GO:1901575 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 ko01110 ko02026 ko04217 ko04910 ko04922 ko04931 map00500 map01100 map01110 map02026 map04217 map04910 map04922 map04931

Pfam Domains

Protein Families

Phosphorylase

Protein Analysis

198

Amino Acids

22.6

Weight (kDa)

5.13

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phosphorylase	PF00343	1 - 150	2.2e-49	Carbohydrate phosphorylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0016958)

Species	Orthologous Gene IDs
pyrus_communis	pycom03g06180 pycom17g05650 pycom17g05660
rosa_chinensis	RchiOBHm_Chr1g0375781
rosa_multiflora	Rmu_co8392471.1_g000001 Rmu_sc0000247.1_g000034
rosa_roxburghii	Rroxscaffold_1G00031980
rosa_samantha	Rh2BG532800 Rh2BG532900 Rh2DG541700 Rh2DG541800 Rh3DG289000 Rh4BG206500
rosa_wichuraiana	Rw3G015630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	367
AccB1I	GGYRCC	1 cut(s)	47
AciI	CCGC	1 cut(s)	201
AclWI	GGATC	4 cut(s)	234, 247, 367, 464
AcoI	YGGCCR	1 cut(s)	265
AcsI	RAATTY	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	589
AfaI	GTAC	2 cut(s)	395, 548
AfiI	CCNNNNNNNGG	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	59, 176
AjnI	CCWGG	1 cut(s)	243
AluBI	AGCT	2 cut(s)	110, 572
AluI	AGCT	2 cut(s)	110, 572
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	4 cut(s)	234, 247, 367, 464
AoxI	GGCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	21
ApoI	RAATTY	1 cut(s)	188
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
BamHI	GGATCC	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	47
BbsI	GAAGAC	2 cut(s)	87, 529
BbvI	GCAGC	1 cut(s)	8
BccI	CCATC	2 cut(s)	38, 351
BceAI	ACGGC	2 cut(s)	34, 252
BcgI	CGANNNNNNTGC	2 cut(s)	13, 47
BciT130I	CCWGG	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	339
BisI	GCNGC	1 cut(s)	22
BlsI	GCNGC	1 cut(s)	23
Bme1390I	CCNGG	1 cut(s)	245
BmiI	GGNNCC	2 cut(s)	49, 241
BmrFI	CCNGG	1 cut(s)	245
BmrI	ACTGGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	33
BmuI	ACTGGG	1 cut(s)	297
BpiI	GAAGAC	2 cut(s)	87, 529
BpmI	CTGGAG	1 cut(s)	571
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	144, 243, 473
Bsc4I	CCNNNNNNNGG	1 cut(s)	325
Bse1I	ACTGG	2 cut(s)	303, 554
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	1 cut(s)	245
BseDI	CCNNGG	3 cut(s)	144, 243, 473
BseGI	GGATG	2 cut(s)	24, 49
BseLI	CCNNNNNNNGG	1 cut(s)	325
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	2 cut(s)	303, 554
BseXI	GCAGC	1 cut(s)	8
BseYI	CCCAGC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	267
BshNI	GGYRCC	1 cut(s)	47
BslFI	GGGAC	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	325
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	1 cut(s)	49
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	267
Bso31I	GGTCTC	1 cut(s)	339
Bsp143I	GATC	3 cut(s)	239, 372, 469
BspACI	CCGC	1 cut(s)	201
BspANI	GGCC	1 cut(s)	267
BspCNI	CTCAG	1 cut(s)	120
BspHI	TCATGA	1 cut(s)	112
BspLI	GGNNCC	2 cut(s)	49, 241
BspPI	GGATC	4 cut(s)	234, 247, 367, 464
BspT107I	GGYRCC	1 cut(s)	47
BspTNI	GGTCTC	1 cut(s)	339
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	303, 554
BssECI	CCNNGG	3 cut(s)	144, 243, 473
BssMI	GATC	3 cut(s)	239, 372, 469
Bst2UI	CCWGG	1 cut(s)	245
Bst4CI	ACNGT	1 cut(s)	589
Bst6I	CTCTTC	1 cut(s)	63
BstC8I	GCNNGC	1 cut(s)	388
BstDEI	CTNAG	1 cut(s)	128
BstF5I	GGATG	2 cut(s)	24, 49
BstKTI	GATC	3 cut(s)	242, 375, 472
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	3 cut(s)	239, 372, 469
BstNI	CCWGG	1 cut(s)	245
BstSCI	CCNGG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	8
BstV2I	GAAGAC	2 cut(s)	87, 529
BstX2I	RGATCY	2 cut(s)	239, 469
BstYI	RGATCY	2 cut(s)	239, 469
BsuRI	GGCC	1 cut(s)	267
BtsCI	GGATG	2 cut(s)	24, 49
BtsI	GCAGTG	1 cut(s)	412
BtsIMutI	CAGTG	1 cut(s)	412
Cac8I	GCNNGC	1 cut(s)	388
CciI	TCATGA	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	394, 547
CviAII	CATG	2 cut(s)	113, 510
CviJI	RGCY	8 cut(s)	21, 110, 127, 143, 267, 390, 478, 572
CviKI_1	RGCY	8 cut(s)	21, 110, 127, 143, 267, 390, 478, 572
CviQI	GTAC	2 cut(s)	394, 547
DdeI	CTNAG	1 cut(s)	128
DpnI	GATC	3 cut(s)	241, 374, 471
DpnII	GATC	3 cut(s)	239, 372, 469
DraIII	CACNNNGTG	1 cut(s)	589
DrdI	GACNNNNNNGTC	1 cut(s)	367
DseDI	GACNNNNNNGTC	1 cut(s)	367
EaeI	YGGCCR	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	63
EarI	CTCTTC	1 cut(s)	63
Eco31I	GGTCTC	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	243
FaeI	CATG	2 cut(s)	116, 513
FaiI	YATR	8 cut(s)	114, 225, 311, 340, 429, 440, 442, 511
FaqI	GGGAC	1 cut(s)	49
FatI	CATG	2 cut(s)	112, 509
FauNDI	CATATG	1 cut(s)	440
Fnu4HI	GCNGC	1 cut(s)	22
FokI	GGATG	2 cut(s)	11, 56
Fsp4HI	GCNGC	1 cut(s)	22
GluI	GCNGC	1 cut(s)	22
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	571
HaeIII	GGCC	1 cut(s)	267
Hin1II	CATG	2 cut(s)	116, 513
HinfI	GANTC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	7 cut(s)	34, 41, 113, 161, 344, 376, 422
Hpy99I	CGWCG	2 cut(s)	290, 461
HpyAV	CCTTC	4 cut(s)	242, 251, 319, 514
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	169
HpyCH4V	TGCA	4 cut(s)	11, 24, 272, 513
HpyF3I	CTNAG	1 cut(s)	128
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	116, 513
Kzo9I	GATC	3 cut(s)	239, 372, 469
LmnI	GCTCC	1 cut(s)	552
Lsp1109I	GCAGC	1 cut(s)	8
LweI	GCATC	1 cut(s)	33
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	2 cut(s)	305, 407
MalI	GATC	3 cut(s)	241, 374, 471
MboI	GATC	3 cut(s)	239, 372, 469
MboII	GAAGA	4 cut(s)	80, 92, 188, 534
MflI	RGATCY	2 cut(s)	239, 469
MluCI	AATT	2 cut(s)	188, 220
MlyI	GAGTC	1 cut(s)	31
MmeI	TCCRAC	1 cut(s)	55
MnlI	CCTC	7 cut(s)	64, 139, 293, 328, 483, 501, 530
MslI	CAYNNNNRTG	1 cut(s)	426
MspR9I	CCNGG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	1 cut(s)	245
NdeI	CATATG	1 cut(s)	440
NdeII	GATC	3 cut(s)	239, 372, 469
NlaIII	CATG	2 cut(s)	116, 513
NlaIV	GGNNCC	2 cut(s)	49, 241
NmeAIII	GCCGAG	2 cut(s)	169, 454
NmuCI	GTSAC	1 cut(s)	407
PagI	TCATGA	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	1 cut(s)	368
PctI	GAATGC	1 cut(s)	320
PkrI	GCNGC	1 cut(s)	23
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
Psp6I	CCWGG	1 cut(s)	243
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	243
PspN4I	GGNNCC	2 cut(s)	49, 241
PsuI	RGATCY	2 cut(s)	239, 469
RsaI	GTAC	2 cut(s)	395, 548
RsaNI	GTAC	2 cut(s)	394, 547
RseI	CAYNNNNRTG	1 cut(s)	426
SatI	GCNGC	1 cut(s)	22
Sau3AI	GATC	3 cut(s)	239, 372, 469
SchI	GAGTC	1 cut(s)	31
ScrFI	CCNGG	1 cut(s)	245
SetI	ASST	5 cut(s)	75, 112, 172, 330, 574
SfaNI	GCATC	1 cut(s)	33
SmiMI	CAYNNNNRTG	1 cut(s)	426
Sse9I	AATT	2 cut(s)	188, 220
SsiI	CCGC	1 cut(s)	201
StyD4I	CCNGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	3 cut(s)	343, 371, 459
TasI	AATT	2 cut(s)	188, 220
TatI	WGTACW	1 cut(s)	546
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	1 cut(s)	407
TseI	GCWGC	1 cut(s)	21
Tsp45I	GTSAC	1 cut(s)	407
TspDTI	ATGAA	3 cut(s)	17, 29, 270
TspRI	CASTG	1 cut(s)	412
XapI	RAATTY	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.